Clone Sequence Records
BS06801.5prime Sequence
585 bp (584 high quality bases) assembled on 2005-12-04
> BS06801.5prime
GAAGTTATCAGTCGACATGTCGGCAGCAGCAGGCTTGATTCCGCCTCCAG
TTTCCTGGGCCCAGCGCAATGACTTGATCTACGTCATCATCGATGTCGAA
TGCAAGGACATCGAACACAAAGTTACGGAAAAAACCTTCACCTTCAAGGG
CGTAAACGTGCTGGATCCGTCGAAGAAGTACGAGGTCACACTGAACTTCC
TCCACGAGGTGGATCCCGAGAAGGTGACCAGCAAGAACATTGGCCGCTGC
CTGGAATTCACAATACCCAAGAAGGCGGCCGGTCCCTACTGGTCCTCGCT
GACCACGGACAAGACCAAGTTGCATTTCCTAAAAGCCAACTTTGCCAAGT
GGCGCGATGAGTCCGACGACGAGGAGGGTGACCAAAAAGACAACAGCATG
TTTGGAAATTTCCTTAACAGCCCTGGTGGCGATTGGAACAACAAGTTCGA
CGATTTCAACGTCGATGACGAGGAGGAGGACTCGGATGACAACATCCCAA
GTCTGTCCCAGAACGACGAGGATGACGAGGAGGGCGGCGAGGGTGATAAG
GAGAAGAAGCCAGCTGCCTAGAAGCTTTCTAGACC
BS06801.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16817-PA | 555 | CG16817-RA | 1..555 | 17..571 | 2775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:54:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16817-RB | 809 | CG16817-RB | 144..699 | 17..572 | 2780 | 100 | Plus |
CG16817-RA | 1120 | CG16817-RA | 144..699 | 17..572 | 2780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:53:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9678716..9678978 | 117..379 | 1300 | 99.6 | Plus |
3R | 32079331 | 3R | 9679042..9679237 | 377..572 | 980 | 100 | Plus |
3R | 32079331 | 3R | 9678561..9678648 | 33..120 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:54:01 has no hits.
BS06801.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:24 Download gff for
BS06801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16817-PA | 1..555 | 17..571 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:25 Download gff for
BS06801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16817-PA | 1..555 | 17..571 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:29:25 Download gff for
BS06801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16817-RA | 140..707 | 9..580 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:00:53 Download gff for
BS06801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16817-RA | 140..707 | 9..580 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:00:53 Download gff for
BS06801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9678562..9678648 | 34..120 | 100 | -> | Plus |
3R | 9678720..9678976 | 121..377 | 100 | -> | Plus |
3R | 9679043..9679245 | 378..580 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:29:25 Download gff for
BS06801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5504284..5504370 | 34..120 | 100 | -> | Plus |
arm_3R | 5504442..5504698 | 121..377 | 100 | -> | Plus |
arm_3R | 5504765..5504967 | 378..580 | 98 | | Plus |
BS06801.3prime Sequence
585 bp (584 high quality bases) assembled on 2005-12-04
> BS06801.3prime
ATGGTCTAGAAAGCTTCTAGGCAGCTGGCTTCTTCTCCTTATCACCCTCG
CCGCCCTCCTCGTCATCCTCGTCGTTCTGGGACAGACTTGGGATGTTGTC
ATCCGAGTCCTCCTCCTCGTCATCGACGTTGAAATCGTCGAACTTGTTGT
TCCAATCGCCACCAGGGCTGTTAAGGAAATTTCCAAACATGCTGTTGTCT
TTTTGGTCACCCTCCTCGTCGTCGGACTCATCGCGCCACTTGGCAAAGTT
GGCTTTTAGGAAATGCAACTTGGTCTTGTCCGTGGTCAGCGAGGACCAGT
AGGGACCGGCCGCCTTCTTGGGTATTGTGAATTCCAGGCAGCGGCCAATG
TTCTTGCTGGTCACCTTCTCGGGATCCACCTCGTGGAGGAAGTTCAGTGT
GACCTCGTACTTCTTCGACGGATCCAGCACGTTTACGCCCTTGAAGGTGA
AGGTTTTTTCCGTAACTTTGTGTTCGATGTCCTTGCATTCGACATCGATG
ATGACGTAGATCAAGTCATTGCGCTGGGCCCAGGAAACTGGAGGCGGAAT
CAAGCCTGCTGCTGCCGACATGTCGACTGATAACT
BS06801.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16817-PA | 555 | CG16817-RA | 1..555 | 571..17 | 2775 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:13:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16817-RB | 809 | CG16817-RB | 144..699 | 571..16 | 2780 | 100 | Minus |
CG16817-RA | 1120 | CG16817-RA | 144..699 | 571..16 | 2780 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:13:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9678716..9678978 | 471..209 | 1300 | 99.6 | Minus |
3R | 32079331 | 3R | 9679042..9679237 | 211..16 | 980 | 100 | Minus |
3R | 32079331 | 3R | 9678561..9678648 | 555..468 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 01:13:21 has no hits.
BS06801.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:23 Download gff for
BS06801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16817-PA | 1..555 | 17..571 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:23 Download gff for
BS06801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16817-PA | 1..555 | 17..571 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:52:41 Download gff for
BS06801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16817-RA | 140..707 | 8..579 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:07:12 Download gff for
BS06801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16817-RA | 140..707 | 8..579 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:07:12 Download gff for
BS06801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9678562..9678648 | 468..554 | 100 | -> | Minus |
3R | 9678720..9678976 | 211..467 | 100 | -> | Minus |
3R | 9679043..9679245 | 8..210 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:52:41 Download gff for
BS06801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5504284..5504370 | 468..554 | 100 | -> | Minus |
arm_3R | 5504442..5504698 | 211..467 | 100 | -> | Minus |
arm_3R | 5504765..5504967 | 8..210 | 98 | | Minus |
BS06801.complete Sequence
587 bp (587 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635620
> BS06801.complete
GAAGTTATCAGTCGACATGTCGGCAGCAGCAGGCTTGATTCCGCCTCCAG
TTTCCTGGGCCCAGCGCAATGACTTGATCTACGTCATCATCGATGTCGAA
TGCAAGGACATCGAACACAAAGTTACGGAAAAAACCTTCACCTTCAAGGG
CGTAAACGTGCTGGATCCGTCGAAGAAGTACGAGGTCACACTGAACTTCC
TCCACGAGGTGGATCCCGAGAAGGTGACCAGCAAGAACATTGGCCGCTGC
CTGGAATTCACAATACCCAAGAAGGCGGCCGGTCCCTACTGGTCCTCGCT
GACCACGGACAAGACCAAGTTGCATTTCCTAAAAGCCAACTTTGCCAAGT
GGCGCGATGAGTCCGACGACGAGGAGGGTGACCAAAAAGACAACAGCATG
TTTGGAAATTTCCTTAACAGCCCTGGTGGCGATTGGAACAACAAGTTCGA
CGATTTCAACGTCGATGACGAGGAGGAGGACTCGGATGACAACATCCCAA
GTCTGTCCCAGAACGACGAGGATGACGAGGAGGGCGGCGAGGGTGATAAG
GAGAAGAAGCCAGCTGCCTAGAAGCTTTCTAGACCAT
BS06801.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:55:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16817-RB | 555 | CG16817-PB | 1..555 | 17..571 | 2775 | 100 | Plus |
CG16817-RA | 555 | CG16817-PA | 1..555 | 17..571 | 2775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:55:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16817-RB | 809 | CG16817-RB | 144..699 | 17..572 | 2780 | 100 | Plus |
CG16817-RA | 1120 | CG16817-RA | 144..699 | 17..572 | 2780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:55:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9678716..9678978 | 117..379 | 1300 | 99.6 | Plus |
3R | 32079331 | 3R | 9679042..9679237 | 377..572 | 980 | 100 | Plus |
3R | 32079331 | 3R | 9678561..9678648 | 33..120 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:55:02 has no hits.
BS06801.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:12 Download gff for
BS06801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16817-RA | 1..555 | 17..571 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:29 Download gff for
BS06801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16817-RA | 136..703 | 9..580 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:41:23 Download gff for
BS06801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16817-RA | 144..698 | 17..571 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:12 Download gff for
BS06801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16817-RA | 136..703 | 9..580 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:48 Download gff for
BS06801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16817-RA | 144..698 | 17..571 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:48 Download gff for
BS06801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9678070..9678086 | 17..33 | 100 | -> | Plus |
3R | 9678562..9678648 | 34..120 | 100 | -> | Plus |
3R | 9678720..9678976 | 121..377 | 100 | -> | Plus |
3R | 9679043..9679236 | 378..571 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:41:23 Download gff for
BS06801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5503792..5503808 | 17..33 | 100 | -> | Plus |
arm_3R | 5504284..5504370 | 34..120 | 100 | -> | Plus |
arm_3R | 5504442..5504698 | 121..377 | 100 | -> | Plus |
arm_3R | 5504765..5504958 | 378..571 | 100 | | Plus |
BS06801.pep Sequence
Translation from 16 to 570
> BS06801.pep
MSAAAGLIPPPVSWAQRNDLIYVIIDVECKDIEHKVTEKTFTFKGVNVLD
PSKKYEVTLNFLHEVDPEKVTSKNIGRCLEFTIPKKAAGPYWSSLTTDKT
KLHFLKANFAKWRDESDDEEGDQKDNSMFGNFLNSPGGDWNNKFDDFNVD
DEEEDSDDNIPSLSQNDEDDEEGGEGDKEKKPAA*
BS06801.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16817-PB | 184 | CG16817-PB | 1..184 | 1..184 | 993 | 100 | Plus |
CG16817-PA | 184 | CG16817-PA | 1..184 | 1..184 | 993 | 100 | Plus |