Clone BS06801 Report

Search the DGRC for BS06801

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:68
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptCG16817-RA
Protein status:BS06801.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06801.5prime Sequence

585 bp (584 high quality bases) assembled on 2005-12-04

> BS06801.5prime
GAAGTTATCAGTCGACATGTCGGCAGCAGCAGGCTTGATTCCGCCTCCAG
TTTCCTGGGCCCAGCGCAATGACTTGATCTACGTCATCATCGATGTCGAA
TGCAAGGACATCGAACACAAAGTTACGGAAAAAACCTTCACCTTCAAGGG
CGTAAACGTGCTGGATCCGTCGAAGAAGTACGAGGTCACACTGAACTTCC
TCCACGAGGTGGATCCCGAGAAGGTGACCAGCAAGAACATTGGCCGCTGC
CTGGAATTCACAATACCCAAGAAGGCGGCCGGTCCCTACTGGTCCTCGCT
GACCACGGACAAGACCAAGTTGCATTTCCTAAAAGCCAACTTTGCCAAGT
GGCGCGATGAGTCCGACGACGAGGAGGGTGACCAAAAAGACAACAGCATG
TTTGGAAATTTCCTTAACAGCCCTGGTGGCGATTGGAACAACAAGTTCGA
CGATTTCAACGTCGATGACGAGGAGGAGGACTCGGATGACAACATCCCAA
GTCTGTCCCAGAACGACGAGGATGACGAGGAGGGCGGCGAGGGTGATAAG
GAGAAGAAGCCAGCTGCCTAGAAGCTTTCTAGACC

BS06801.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG16817-PA 555 CG16817-RA 1..555 17..571 2775 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG16817-RB 809 CG16817-RB 144..699 17..572 2780 100 Plus
CG16817-RA 1120 CG16817-RA 144..699 17..572 2780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9678716..9678978 117..379 1300 99.6 Plus
3R 32079331 3R 9679042..9679237 377..572 980 100 Plus
3R 32079331 3R 9678561..9678648 33..120 440 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:54:01 has no hits.

BS06801.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:24 Download gff for BS06801.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16817-PA 1..555 17..571 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:25 Download gff for BS06801.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16817-PA 1..555 17..571 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:29:25 Download gff for BS06801.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16817-RA 140..707 9..580 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:00:53 Download gff for BS06801.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16817-RA 140..707 9..580 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:00:53 Download gff for BS06801.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9678562..9678648 34..120 100 -> Plus
3R 9678720..9678976 121..377 100 -> Plus
3R 9679043..9679245 378..580 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:29:25 Download gff for BS06801.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5504284..5504370 34..120 100 -> Plus
arm_3R 5504442..5504698 121..377 100 -> Plus
arm_3R 5504765..5504967 378..580 98   Plus

BS06801.3prime Sequence

585 bp (584 high quality bases) assembled on 2005-12-04

> BS06801.3prime
ATGGTCTAGAAAGCTTCTAGGCAGCTGGCTTCTTCTCCTTATCACCCTCG
CCGCCCTCCTCGTCATCCTCGTCGTTCTGGGACAGACTTGGGATGTTGTC
ATCCGAGTCCTCCTCCTCGTCATCGACGTTGAAATCGTCGAACTTGTTGT
TCCAATCGCCACCAGGGCTGTTAAGGAAATTTCCAAACATGCTGTTGTCT
TTTTGGTCACCCTCCTCGTCGTCGGACTCATCGCGCCACTTGGCAAAGTT
GGCTTTTAGGAAATGCAACTTGGTCTTGTCCGTGGTCAGCGAGGACCAGT
AGGGACCGGCCGCCTTCTTGGGTATTGTGAATTCCAGGCAGCGGCCAATG
TTCTTGCTGGTCACCTTCTCGGGATCCACCTCGTGGAGGAAGTTCAGTGT
GACCTCGTACTTCTTCGACGGATCCAGCACGTTTACGCCCTTGAAGGTGA
AGGTTTTTTCCGTAACTTTGTGTTCGATGTCCTTGCATTCGACATCGATG
ATGACGTAGATCAAGTCATTGCGCTGGGCCCAGGAAACTGGAGGCGGAAT
CAAGCCTGCTGCTGCCGACATGTCGACTGATAACT

BS06801.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG16817-PA 555 CG16817-RA 1..555 571..17 2775 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:13:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG16817-RB 809 CG16817-RB 144..699 571..16 2780 100 Minus
CG16817-RA 1120 CG16817-RA 144..699 571..16 2780 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9678716..9678978 471..209 1300 99.6 Minus
3R 32079331 3R 9679042..9679237 211..16 980 100 Minus
3R 32079331 3R 9678561..9678648 555..468 440 100 Minus
Blast to na_te.dros performed on 2015-02-09 01:13:21 has no hits.

BS06801.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:23 Download gff for BS06801.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16817-PA 1..555 17..571 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:23 Download gff for BS06801.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16817-PA 1..555 17..571 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:52:41 Download gff for BS06801.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16817-RA 140..707 8..579 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:07:12 Download gff for BS06801.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16817-RA 140..707 8..579 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:07:12 Download gff for BS06801.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9678562..9678648 468..554 100 -> Minus
3R 9678720..9678976 211..467 100 -> Minus
3R 9679043..9679245 8..210 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:52:41 Download gff for BS06801.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5504284..5504370 468..554 100 -> Minus
arm_3R 5504442..5504698 211..467 100 -> Minus
arm_3R 5504765..5504967 8..210 98   Minus

BS06801.complete Sequence

587 bp (587 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635620

> BS06801.complete
GAAGTTATCAGTCGACATGTCGGCAGCAGCAGGCTTGATTCCGCCTCCAG
TTTCCTGGGCCCAGCGCAATGACTTGATCTACGTCATCATCGATGTCGAA
TGCAAGGACATCGAACACAAAGTTACGGAAAAAACCTTCACCTTCAAGGG
CGTAAACGTGCTGGATCCGTCGAAGAAGTACGAGGTCACACTGAACTTCC
TCCACGAGGTGGATCCCGAGAAGGTGACCAGCAAGAACATTGGCCGCTGC
CTGGAATTCACAATACCCAAGAAGGCGGCCGGTCCCTACTGGTCCTCGCT
GACCACGGACAAGACCAAGTTGCATTTCCTAAAAGCCAACTTTGCCAAGT
GGCGCGATGAGTCCGACGACGAGGAGGGTGACCAAAAAGACAACAGCATG
TTTGGAAATTTCCTTAACAGCCCTGGTGGCGATTGGAACAACAAGTTCGA
CGATTTCAACGTCGATGACGAGGAGGAGGACTCGGATGACAACATCCCAA
GTCTGTCCCAGAACGACGAGGATGACGAGGAGGGCGGCGAGGGTGATAAG
GAGAAGAAGCCAGCTGCCTAGAAGCTTTCTAGACCAT

BS06801.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG16817-RB 555 CG16817-PB 1..555 17..571 2775 100 Plus
CG16817-RA 555 CG16817-PA 1..555 17..571 2775 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG16817-RB 809 CG16817-RB 144..699 17..572 2780 100 Plus
CG16817-RA 1120 CG16817-RA 144..699 17..572 2780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:55:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9678716..9678978 117..379 1300 99.6 Plus
3R 32079331 3R 9679042..9679237 377..572 980 100 Plus
3R 32079331 3R 9678561..9678648 33..120 440 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:55:02 has no hits.

BS06801.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:12 Download gff for BS06801.complete
Subject Subject Range Query Range Percent Splice Strand
CG16817-RA 1..555 17..571 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:29 Download gff for BS06801.complete
Subject Subject Range Query Range Percent Splice Strand
CG16817-RA 136..703 9..580 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:41:23 Download gff for BS06801.complete
Subject Subject Range Query Range Percent Splice Strand
CG16817-RA 144..698 17..571 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:12 Download gff for BS06801.complete
Subject Subject Range Query Range Percent Splice Strand
CG16817-RA 136..703 9..580 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:48 Download gff for BS06801.complete
Subject Subject Range Query Range Percent Splice Strand
CG16817-RA 144..698 17..571 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:48 Download gff for BS06801.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9678070..9678086 17..33 100 -> Plus
3R 9678562..9678648 34..120 100 -> Plus
3R 9678720..9678976 121..377 100 -> Plus
3R 9679043..9679236 378..571 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:41:23 Download gff for BS06801.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5503792..5503808 17..33 100 -> Plus
arm_3R 5504284..5504370 34..120 100 -> Plus
arm_3R 5504442..5504698 121..377 100 -> Plus
arm_3R 5504765..5504958 378..571 100   Plus

BS06801.pep Sequence

Translation from 16 to 570

> BS06801.pep
MSAAAGLIPPPVSWAQRNDLIYVIIDVECKDIEHKVTEKTFTFKGVNVLD
PSKKYEVTLNFLHEVDPEKVTSKNIGRCLEFTIPKKAAGPYWSSLTTDKT
KLHFLKANFAKWRDESDDEEGDQKDNSMFGNFLNSPGGDWNNKFDDFNVD
DEEEDSDDNIPSLSQNDEDDEEGGEGDKEKKPAA*

BS06801.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG16817-PB 184 CG16817-PB 1..184 1..184 993 100 Plus
CG16817-PA 184 CG16817-PA 1..184 1..184 993 100 Plus