Clone BS06802 Report

Search the DGRC for BS06802

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:68
Well:2
Vector:pDNR-Dual
Associated Gene/Transcriptalph-RE
Protein status:BS06802.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06802.3prime Sequence

898 bp (875 high quality bases) assembled on 2005-12-04

> BS06802.3prime
ATGGTCTAGAAAGCTTCTAGAATGGAATAAAATATGAGATTCCATTGCCT
TCACATGGTCGATCCGGAAACTCTTGCTTGAATGTGCGCTCGATAACGTG
ATATTTGGACTGTAGACCTCCTCCGGGTGGAAGACCTTCGATGTCGTCTC
TGTTCTGCAGACACTTCAGCAGATCCACGTAGTCGGTTATCTTGCTAGAC
TCTATCTCGTCTCTTGTGATCTTCTCGATTTGCTTTTCCAGACGATGTTC
AGCCTCTATCGCCTCCTCGGTGGGCTTCGGAGCTCCGGGGAAGGCAATGA
TGATGATGCTCATGTTGTCGCGGCTACCCTTGTGCAGGCAGGTGTCCACG
ACCTGGTTGGCGATGCTCACTAGGTTACTGGTCACCCGCATTCGCGAGTG
GATGAAGCTGCACACGTCCTCGTTGGACATCACATCCCAGATTCCATCGC
AAGCGAGCACCAGGAACTCATCGCTATCCTGGCGGCTCTGACAGAATATC
TCCGGTTCCGGCGATACCAACTGCTCGCACTGTCCCTTCTCCTTGACGTT
CTTAAAGTCGTAATCCCCAAGGGCTCTCGACACTGCCAGGGTACCATTTA
CGCGCTTTATCATAACACTGCCACCCGCATTATAGATGCGCTCTTTCTCC
TCCGGCAGAATGGGTTTGTGATCCTGCGTGGCGAACACCGGAACACCCTG
GCGGCACAAGACGGCCCTCGAATCACCACAATTGGCGATGTACACTTGCG
TGAGGCCGACAAAGGCGCACACGGCGGTAGTTCCGCCGCATTTCTCCGAC
TCCCGGGTGAATTCCGGCAGTTCCCGCATAACCTCGTCGATGCGCAGGAA
GCCGGTGCGAATGCCCTTCACGTGGTCGCCTCCCATGAATTCCTCGGT

BS06802.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG1906-PE 1125 CG1906-RE 244..1125 898..17 4385 99.8 Minus
CG1906-PA 1107 CG1906-RA 244..1092 898..50 4220 99.8 Minus
CG1906-PB 1116 CG1906-RB 244..1092 898..50 4220 99.8 Minus
CG1906-PD 1107 CG1906-RD 244..1092 898..50 4220 99.8 Minus
CG1906-PC 1107 CG1906-RC 244..1092 898..50 4220 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
alph-RE 1683 CG1906-RE 660..1542 898..16 4400 99.9 Minus
alph-RC 2341 CG1906-RC 425..1273 898..50 4230 99.9 Minus
alph-RD 2417 CG1906-RD 501..1349 898..50 4230 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29593594..29594164 898..328 2840 99.8 Minus
3R 32079331 3R 29594225..29594344 330..211 600 100 Minus
3R 32079331 3R 29597239..29597346 212..105 540 100 Minus
3R 32079331 3R 29597419..29597474 104..49 280 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:50:23 has no hits.

BS06802.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:26 Download gff for BS06802.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1906-PE 244..1125 17..898 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:26 Download gff for BS06802.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1906-PE 244..1125 17..898 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:47:50 Download gff for BS06802.3prime
Subject Subject Range Query Range Percent Splice Strand
alph-RE 660..1544 13..898 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:23:15 Download gff for BS06802.3prime
Subject Subject Range Query Range Percent Splice Strand
alph-RE 660..1544 13..898 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:23:15 Download gff for BS06802.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29593594..29594163 329..898 99 -> Minus
3R 29594227..29594344 211..328 100 -> Minus
3R 29597241..29597346 105..210 100 -> Minus
3R 29597419..29597473 50..104 100 -> Minus
3R 29604510..29604545 13..49 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:47:50 Download gff for BS06802.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25419316..25419885 329..898 99 -> Minus
arm_3R 25419949..25420066 211..328 100 -> Minus
arm_3R 25422963..25423068 105..210 100 -> Minus
arm_3R 25423141..25423195 50..104 100 -> Minus
arm_3R 25430232..25430267 13..49 97   Minus

BS06802.5prime Sequence

874 bp (795 high quality bases) assembled on 2005-12-04

> BS06802.5prime
GAAGTTATCAGTCGACATGGGCGGATTCCTGGATAAGCCGAAAACCGCCA
AGCACAATGACGAGGGTGAGGGCAACAAGCTGCTCTTCGGGGTCAGCTCG
ATGCAGGGATGGCGGTCGGAGATGGAGGACGCCTACTACGCTCGTGCCGG
GCTGGGGGATGCCCTGCCGGACTGGAGCTTCTTTGCCGTGTTCGACGGGC
ATGCCGGATGCAAGGTGTCGGAGCACTGTGCCAAGCACCTTCTGGAGAGC
ATTATTAGCACCGAGGAATTCATTGGAGGCGACCACGTGAAGGGCATTCG
CACCGGCTTCCTGCGCATCGACGAGGTTATGCGGGAACTGCCGGAATTCA
CCCGGGAGTCGGAGAAATGCGGCGGAACTACCGCCGTGTGCGCCTTTGTC
GGCCTCACGCAAGTGTACATCGCCAATTGTGGTGATTCGAGGGCCGTCTT
GTGCCGCCAGGGTGTTCCGGTGTTCGCCACGCAGGATCACAAACCCATTC
TGCCGGAGGAGAAAGAGCGCATCTATAATGCGGGTGGCAGTGTTATGATA
AAGCGCGTAAATGGTACCCTGGCAGTGTCGAGAGCCCTTGGGGATTACGA
CTTTAAGAACGTCAAGGAGAAGGGACAGTGCGAGCAGTTGGTATCGCCGG
AACCGGAGATATTCTGTCAGAGCCGCCAGGATAGCGATGAGTTCCTGGTG
CTCGCTTGCGATGGAATCTGGGATGTGATGTCCAACGAGGACGTGTGCAG
CTTCATCCACTCGCGAATGCGGGTGACCAGTAACCTAGTGAGCATCGCCA
ACCAGGTCGTGGACACCTGCCTGCACAAGGGTAGCCGCGACAACATGAGC
ATCATCATCATTGCCTTCCCCGGA

BS06802.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG1906-PA 1107 CG1906-RA 1..858 17..874 4290 100 Plus
CG1906-PB 1116 CG1906-RB 1..858 17..874 4290 100 Plus
CG1906-PE 1125 CG1906-RE 1..858 17..874 4290 100 Plus
CG1906-PD 1107 CG1906-RD 1..858 17..874 4290 100 Plus
CG1906-PC 1107 CG1906-RC 1..858 17..874 4290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
alph-RC 2341 CG1906-RC 173..1039 8..874 4305 99.8 Plus
alph-RD 2417 CG1906-RD 249..1115 8..874 4305 99.8 Plus
alph-RE 1683 CG1906-RE 408..1274 8..874 4305 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:40:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29593342..29594164 8..830 4085 99.8 Plus
3R 32079331 3R 29594225..29594271 828..874 235 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:41:02 has no hits.

BS06802.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:27 Download gff for BS06802.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1906-PC 1..857 17..873 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:28 Download gff for BS06802.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1906-PC 1..857 17..873 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:42:40 Download gff for BS06802.5prime
Subject Subject Range Query Range Percent Splice Strand
alph-RE 408..1273 8..873 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:42 Download gff for BS06802.5prime
Subject Subject Range Query Range Percent Splice Strand
alph-RE 408..1273 8..873 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:42 Download gff for BS06802.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29593342..29594163 8..829 99 -> Plus
3R 29594227..29594270 830..873 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:42:40 Download gff for BS06802.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25419064..25419885 8..829 99 -> Plus
arm_3R 25419949..25419992 830..873 100   Plus

BS06802.complete Sequence

1157 bp (1157 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635621

> BS06802.complete
GAAGTTATCAGTCGACATGGGCGGATTCCTGGATAAGCCGAAAACCGCCA
AGCACAATGACGAGGGTGAGGGCAACAAGCTGCTCTTCGGGGTCAGCTCG
ATGCAGGGATGGCGGTCGGAGATGGAGGACGCCTACTACGCTCGTGCCGG
GCTGGGGGATGCCCTGCCGGACTGGAGCTTCTTTGCCGTGTTCGACGGGC
ATGCCGGATGCAAGGTGTCGGAGCACTGTGCCAAGCACCTTCTGGAGAGC
ATTATTAGCACCGAGGAATTCATTGGAGGCGACCACGTGAAGGGCATTCG
CACCGGCTTCCTGCGCATCGACGAGGTTATGCGGGAACTGCCGGAATTCA
CCCGGGAGTCGGAGAAATGCGGCGGAACTACCGCCGTGTGCGCCTTTGTC
GGCCTCACGCAAGTGTACATCGCCAATTGTGGTGATTCGAGGGCCGTCTT
GTGCCGCCAGGGTGTTCCGGTGTTCGCCACGCAGGATCACAAACCCATTC
TGCCGGAGGAGAAAGAGCGCATCTATAATGCGGGTGGCAGTGTTATGATA
AAGCGCGTAAATGGTACCCTGGCAGTGTCGAGAGCCCTTGGGGATTACGA
CTTTAAGAACGTCAAGGAGAAGGGACAGTGCGAGCAGTTGGTATCGCCGG
AACCGGAGATATTCTGTCAGAGCCGCCAGGATAGCGATGAGTTCCTGGTG
CTCGCTTGCGATGGAATCTGGGATGTGATGTCCAACGAGGACGTGTGCAG
CTTCATCCACTCGCGAATGCGGGTGACCAGTAACCTAGTGAGCATCGCCA
ACCAGGTCGTGGACACCTGCCTGCACAAGGGTAGCCGCGACAACATGAGC
ATCATCATCATTGCCTTCCCCGGAGCTCCGAAGCCCACCGAGGAGGCGAT
AGAGGCTGAACATCGTCTGGAAAAGCAAATCGAGAAGATCACAAGAGACG
AGATAGAGTCTAGCAAGATAACCGACTACGTGGATCTGCTGAAGTGTCTG
CAGAACAGAGACGACATCGAAGGTCTTCCACCCGGAGGAGGTCTACAGTC
CAAATATCACGTTATCGAGCGCACATTCAAGCAAGAGTTTCCGGATCGAC
CATGTGAAGGCAATGGAATCTCATATTTTATTCCATTCTAGAAGCTTTCT
AGACCAT

BS06802.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:58:32
Subject Length Description Subject Range Query Range Score Percent Strand
alph-RE 1125 CG1906-PE 1..1125 17..1141 5625 100 Plus
alph-RC 1107 CG1906-PC 1..1092 17..1108 5460 100 Plus
alph-RD 1107 CG1906-PD 1..1092 17..1108 5460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
alph-RE 1683 CG1906-RE 408..1542 8..1142 5645 99.8 Plus
alph-RC 2341 CG1906-RC 173..1273 8..1108 5475 99.8 Plus
alph-RD 2417 CG1906-RD 249..1349 8..1108 5475 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:58:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29593342..29594164 8..830 4085 99.8 Plus
3R 32079331 3R 29594225..29594344 828..947 600 100 Plus
3R 32079331 3R 29597239..29597346 946..1053 540 100 Plus
3R 32079331 3R 29597419..29597474 1054..1109 280 100 Plus
Blast to na_te.dros performed on 2014-11-28 07:58:31 has no hits.

BS06802.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:10 Download gff for BS06802.complete
Subject Subject Range Query Range Percent Splice Strand
alph-RE 1..1125 17..1141 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:47:23 Download gff for BS06802.complete
Subject Subject Range Query Range Percent Splice Strand
alph-RE 426..1550 17..1141 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:17 Download gff for BS06802.complete
Subject Subject Range Query Range Percent Splice Strand
alph-RE 417..1541 17..1141 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:10 Download gff for BS06802.complete
Subject Subject Range Query Range Percent Splice Strand
alph-RE 417..1553 8..1145 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:08:14 Download gff for BS06802.complete
Subject Subject Range Query Range Percent Splice Strand
alph-RE 417..1541 17..1141 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:08:14 Download gff for BS06802.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29593351..29594163 17..829 100 -> Plus
3R 29594227..29594344 830..947 100 -> Plus
3R 29597241..29597346 948..1053 100 -> Plus
3R 29597419..29597473 1054..1108 100 -> Plus
3R 29604510..29604542 1109..1141 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:17 Download gff for BS06802.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25419073..25419885 17..829 100 -> Plus
arm_3R 25419949..25420066 830..947 100 -> Plus
arm_3R 25422963..25423068 948..1053 100 -> Plus
arm_3R 25423141..25423195 1054..1108 100 -> Plus
arm_3R 25430232..25430264 1109..1141 100   Plus

BS06802.pep Sequence

Translation from 16 to 1140

> BS06802.pep
MGGFLDKPKTAKHNDEGEGNKLLFGVSSMQGWRSEMEDAYYARAGLGDAL
PDWSFFAVFDGHAGCKVSEHCAKHLLESIISTEEFIGGDHVKGIRTGFLR
IDEVMRELPEFTRESEKCGGTTAVCAFVGLTQVYIANCGDSRAVLCRQGV
PVFATQDHKPILPEEKERIYNAGGSVMIKRVNGTLAVSRALGDYDFKNVK
EKGQCEQLVSPEPEIFCQSRQDSDEFLVLACDGIWDVMSNEDVCSFIHSR
MRVTSNLVSIANQVVDTCLHKGSRDNMSIIIIAFPGAPKPTEEAIEAEHR
LEKQIEKITRDEIESSKITDYVDLLKCLQNRDDIEGLPPGGGLQSKYHVI
ERTFKQEFPDRPCEGNGISYFIPF*

BS06802.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
alph-PE 374 CG1906-PE 1..374 1..374 1984 100 Plus
alph-PC 368 CG1906-PC 1..364 1..364 1928 100 Plus
alph-PD 368 CG1906-PD 1..364 1..364 1928 100 Plus
alph-PA 368 CG1906-PA 1..364 1..364 1928 100 Plus
alph-PB 371 CG1906-PB 1..364 1..364 1928 100 Plus