Clone Sequence Records
BS06802.3prime Sequence
898 bp (875 high quality bases) assembled on 2005-12-04
> BS06802.3prime
ATGGTCTAGAAAGCTTCTAGAATGGAATAAAATATGAGATTCCATTGCCT
TCACATGGTCGATCCGGAAACTCTTGCTTGAATGTGCGCTCGATAACGTG
ATATTTGGACTGTAGACCTCCTCCGGGTGGAAGACCTTCGATGTCGTCTC
TGTTCTGCAGACACTTCAGCAGATCCACGTAGTCGGTTATCTTGCTAGAC
TCTATCTCGTCTCTTGTGATCTTCTCGATTTGCTTTTCCAGACGATGTTC
AGCCTCTATCGCCTCCTCGGTGGGCTTCGGAGCTCCGGGGAAGGCAATGA
TGATGATGCTCATGTTGTCGCGGCTACCCTTGTGCAGGCAGGTGTCCACG
ACCTGGTTGGCGATGCTCACTAGGTTACTGGTCACCCGCATTCGCGAGTG
GATGAAGCTGCACACGTCCTCGTTGGACATCACATCCCAGATTCCATCGC
AAGCGAGCACCAGGAACTCATCGCTATCCTGGCGGCTCTGACAGAATATC
TCCGGTTCCGGCGATACCAACTGCTCGCACTGTCCCTTCTCCTTGACGTT
CTTAAAGTCGTAATCCCCAAGGGCTCTCGACACTGCCAGGGTACCATTTA
CGCGCTTTATCATAACACTGCCACCCGCATTATAGATGCGCTCTTTCTCC
TCCGGCAGAATGGGTTTGTGATCCTGCGTGGCGAACACCGGAACACCCTG
GCGGCACAAGACGGCCCTCGAATCACCACAATTGGCGATGTACACTTGCG
TGAGGCCGACAAAGGCGCACACGGCGGTAGTTCCGCCGCATTTCTCCGAC
TCCCGGGTGAATTCCGGCAGTTCCCGCATAACCTCGTCGATGCGCAGGAA
GCCGGTGCGAATGCCCTTCACGTGGTCGCCTCCCATGAATTCCTCGGT
BS06802.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1906-PE | 1125 | CG1906-RE | 244..1125 | 898..17 | 4385 | 99.8 | Minus |
CG1906-PA | 1107 | CG1906-RA | 244..1092 | 898..50 | 4220 | 99.8 | Minus |
CG1906-PB | 1116 | CG1906-RB | 244..1092 | 898..50 | 4220 | 99.8 | Minus |
CG1906-PD | 1107 | CG1906-RD | 244..1092 | 898..50 | 4220 | 99.8 | Minus |
CG1906-PC | 1107 | CG1906-RC | 244..1092 | 898..50 | 4220 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:50:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alph-RE | 1683 | CG1906-RE | 660..1542 | 898..16 | 4400 | 99.9 | Minus |
alph-RC | 2341 | CG1906-RC | 425..1273 | 898..50 | 4230 | 99.9 | Minus |
alph-RD | 2417 | CG1906-RD | 501..1349 | 898..50 | 4230 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:50:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29593594..29594164 | 898..328 | 2840 | 99.8 | Minus |
3R | 32079331 | 3R | 29594225..29594344 | 330..211 | 600 | 100 | Minus |
3R | 32079331 | 3R | 29597239..29597346 | 212..105 | 540 | 100 | Minus |
3R | 32079331 | 3R | 29597419..29597474 | 104..49 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:50:23 has no hits.
BS06802.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:26 Download gff for
BS06802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1906-PE | 244..1125 | 17..898 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:26 Download gff for
BS06802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1906-PE | 244..1125 | 17..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:47:50 Download gff for
BS06802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alph-RE | 660..1544 | 13..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:23:15 Download gff for
BS06802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alph-RE | 660..1544 | 13..898 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:23:15 Download gff for
BS06802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29593594..29594163 | 329..898 | 99 | -> | Minus |
3R | 29594227..29594344 | 211..328 | 100 | -> | Minus |
3R | 29597241..29597346 | 105..210 | 100 | -> | Minus |
3R | 29597419..29597473 | 50..104 | 100 | -> | Minus |
3R | 29604510..29604545 | 13..49 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:47:50 Download gff for
BS06802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25419316..25419885 | 329..898 | 99 | -> | Minus |
arm_3R | 25419949..25420066 | 211..328 | 100 | -> | Minus |
arm_3R | 25422963..25423068 | 105..210 | 100 | -> | Minus |
arm_3R | 25423141..25423195 | 50..104 | 100 | -> | Minus |
arm_3R | 25430232..25430267 | 13..49 | 97 | | Minus |
BS06802.5prime Sequence
874 bp (795 high quality bases) assembled on 2005-12-04
> BS06802.5prime
GAAGTTATCAGTCGACATGGGCGGATTCCTGGATAAGCCGAAAACCGCCA
AGCACAATGACGAGGGTGAGGGCAACAAGCTGCTCTTCGGGGTCAGCTCG
ATGCAGGGATGGCGGTCGGAGATGGAGGACGCCTACTACGCTCGTGCCGG
GCTGGGGGATGCCCTGCCGGACTGGAGCTTCTTTGCCGTGTTCGACGGGC
ATGCCGGATGCAAGGTGTCGGAGCACTGTGCCAAGCACCTTCTGGAGAGC
ATTATTAGCACCGAGGAATTCATTGGAGGCGACCACGTGAAGGGCATTCG
CACCGGCTTCCTGCGCATCGACGAGGTTATGCGGGAACTGCCGGAATTCA
CCCGGGAGTCGGAGAAATGCGGCGGAACTACCGCCGTGTGCGCCTTTGTC
GGCCTCACGCAAGTGTACATCGCCAATTGTGGTGATTCGAGGGCCGTCTT
GTGCCGCCAGGGTGTTCCGGTGTTCGCCACGCAGGATCACAAACCCATTC
TGCCGGAGGAGAAAGAGCGCATCTATAATGCGGGTGGCAGTGTTATGATA
AAGCGCGTAAATGGTACCCTGGCAGTGTCGAGAGCCCTTGGGGATTACGA
CTTTAAGAACGTCAAGGAGAAGGGACAGTGCGAGCAGTTGGTATCGCCGG
AACCGGAGATATTCTGTCAGAGCCGCCAGGATAGCGATGAGTTCCTGGTG
CTCGCTTGCGATGGAATCTGGGATGTGATGTCCAACGAGGACGTGTGCAG
CTTCATCCACTCGCGAATGCGGGTGACCAGTAACCTAGTGAGCATCGCCA
ACCAGGTCGTGGACACCTGCCTGCACAAGGGTAGCCGCGACAACATGAGC
ATCATCATCATTGCCTTCCCCGGA
BS06802.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1906-PA | 1107 | CG1906-RA | 1..858 | 17..874 | 4290 | 100 | Plus |
CG1906-PB | 1116 | CG1906-RB | 1..858 | 17..874 | 4290 | 100 | Plus |
CG1906-PE | 1125 | CG1906-RE | 1..858 | 17..874 | 4290 | 100 | Plus |
CG1906-PD | 1107 | CG1906-RD | 1..858 | 17..874 | 4290 | 100 | Plus |
CG1906-PC | 1107 | CG1906-RC | 1..858 | 17..874 | 4290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:41:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alph-RC | 2341 | CG1906-RC | 173..1039 | 8..874 | 4305 | 99.8 | Plus |
alph-RD | 2417 | CG1906-RD | 249..1115 | 8..874 | 4305 | 99.8 | Plus |
alph-RE | 1683 | CG1906-RE | 408..1274 | 8..874 | 4305 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:40:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29593342..29594164 | 8..830 | 4085 | 99.8 | Plus |
3R | 32079331 | 3R | 29594225..29594271 | 828..874 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:41:02 has no hits.
BS06802.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:27 Download gff for
BS06802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1906-PC | 1..857 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:28 Download gff for
BS06802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1906-PC | 1..857 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:42:40 Download gff for
BS06802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alph-RE | 408..1273 | 8..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:42 Download gff for
BS06802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alph-RE | 408..1273 | 8..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:42 Download gff for
BS06802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29593342..29594163 | 8..829 | 99 | -> | Plus |
3R | 29594227..29594270 | 830..873 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:42:40 Download gff for
BS06802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25419064..25419885 | 8..829 | 99 | -> | Plus |
arm_3R | 25419949..25419992 | 830..873 | 100 | | Plus |
BS06802.complete Sequence
1157 bp (1157 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635621
> BS06802.complete
GAAGTTATCAGTCGACATGGGCGGATTCCTGGATAAGCCGAAAACCGCCA
AGCACAATGACGAGGGTGAGGGCAACAAGCTGCTCTTCGGGGTCAGCTCG
ATGCAGGGATGGCGGTCGGAGATGGAGGACGCCTACTACGCTCGTGCCGG
GCTGGGGGATGCCCTGCCGGACTGGAGCTTCTTTGCCGTGTTCGACGGGC
ATGCCGGATGCAAGGTGTCGGAGCACTGTGCCAAGCACCTTCTGGAGAGC
ATTATTAGCACCGAGGAATTCATTGGAGGCGACCACGTGAAGGGCATTCG
CACCGGCTTCCTGCGCATCGACGAGGTTATGCGGGAACTGCCGGAATTCA
CCCGGGAGTCGGAGAAATGCGGCGGAACTACCGCCGTGTGCGCCTTTGTC
GGCCTCACGCAAGTGTACATCGCCAATTGTGGTGATTCGAGGGCCGTCTT
GTGCCGCCAGGGTGTTCCGGTGTTCGCCACGCAGGATCACAAACCCATTC
TGCCGGAGGAGAAAGAGCGCATCTATAATGCGGGTGGCAGTGTTATGATA
AAGCGCGTAAATGGTACCCTGGCAGTGTCGAGAGCCCTTGGGGATTACGA
CTTTAAGAACGTCAAGGAGAAGGGACAGTGCGAGCAGTTGGTATCGCCGG
AACCGGAGATATTCTGTCAGAGCCGCCAGGATAGCGATGAGTTCCTGGTG
CTCGCTTGCGATGGAATCTGGGATGTGATGTCCAACGAGGACGTGTGCAG
CTTCATCCACTCGCGAATGCGGGTGACCAGTAACCTAGTGAGCATCGCCA
ACCAGGTCGTGGACACCTGCCTGCACAAGGGTAGCCGCGACAACATGAGC
ATCATCATCATTGCCTTCCCCGGAGCTCCGAAGCCCACCGAGGAGGCGAT
AGAGGCTGAACATCGTCTGGAAAAGCAAATCGAGAAGATCACAAGAGACG
AGATAGAGTCTAGCAAGATAACCGACTACGTGGATCTGCTGAAGTGTCTG
CAGAACAGAGACGACATCGAAGGTCTTCCACCCGGAGGAGGTCTACAGTC
CAAATATCACGTTATCGAGCGCACATTCAAGCAAGAGTTTCCGGATCGAC
CATGTGAAGGCAATGGAATCTCATATTTTATTCCATTCTAGAAGCTTTCT
AGACCAT
BS06802.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:58:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alph-RE | 1125 | CG1906-PE | 1..1125 | 17..1141 | 5625 | 100 | Plus |
alph-RC | 1107 | CG1906-PC | 1..1092 | 17..1108 | 5460 | 100 | Plus |
alph-RD | 1107 | CG1906-PD | 1..1092 | 17..1108 | 5460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:58:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alph-RE | 1683 | CG1906-RE | 408..1542 | 8..1142 | 5645 | 99.8 | Plus |
alph-RC | 2341 | CG1906-RC | 173..1273 | 8..1108 | 5475 | 99.8 | Plus |
alph-RD | 2417 | CG1906-RD | 249..1349 | 8..1108 | 5475 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:58:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29593342..29594164 | 8..830 | 4085 | 99.8 | Plus |
3R | 32079331 | 3R | 29594225..29594344 | 828..947 | 600 | 100 | Plus |
3R | 32079331 | 3R | 29597239..29597346 | 946..1053 | 540 | 100 | Plus |
3R | 32079331 | 3R | 29597419..29597474 | 1054..1109 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:58:31 has no hits.
BS06802.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:10 Download gff for
BS06802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alph-RE | 1..1125 | 17..1141 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:47:23 Download gff for
BS06802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alph-RE | 426..1550 | 17..1141 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:17 Download gff for
BS06802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alph-RE | 417..1541 | 17..1141 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:10 Download gff for
BS06802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alph-RE | 417..1553 | 8..1145 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:08:14 Download gff for
BS06802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alph-RE | 417..1541 | 17..1141 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:08:14 Download gff for
BS06802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29593351..29594163 | 17..829 | 100 | -> | Plus |
3R | 29594227..29594344 | 830..947 | 100 | -> | Plus |
3R | 29597241..29597346 | 948..1053 | 100 | -> | Plus |
3R | 29597419..29597473 | 1054..1108 | 100 | -> | Plus |
3R | 29604510..29604542 | 1109..1141 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:17 Download gff for
BS06802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25419073..25419885 | 17..829 | 100 | -> | Plus |
arm_3R | 25419949..25420066 | 830..947 | 100 | -> | Plus |
arm_3R | 25422963..25423068 | 948..1053 | 100 | -> | Plus |
arm_3R | 25423141..25423195 | 1054..1108 | 100 | -> | Plus |
arm_3R | 25430232..25430264 | 1109..1141 | 100 | | Plus |
BS06802.pep Sequence
Translation from 16 to 1140
> BS06802.pep
MGGFLDKPKTAKHNDEGEGNKLLFGVSSMQGWRSEMEDAYYARAGLGDAL
PDWSFFAVFDGHAGCKVSEHCAKHLLESIISTEEFIGGDHVKGIRTGFLR
IDEVMRELPEFTRESEKCGGTTAVCAFVGLTQVYIANCGDSRAVLCRQGV
PVFATQDHKPILPEEKERIYNAGGSVMIKRVNGTLAVSRALGDYDFKNVK
EKGQCEQLVSPEPEIFCQSRQDSDEFLVLACDGIWDVMSNEDVCSFIHSR
MRVTSNLVSIANQVVDTCLHKGSRDNMSIIIIAFPGAPKPTEEAIEAEHR
LEKQIEKITRDEIESSKITDYVDLLKCLQNRDDIEGLPPGGGLQSKYHVI
ERTFKQEFPDRPCEGNGISYFIPF*
BS06802.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alph-PE | 374 | CG1906-PE | 1..374 | 1..374 | 1984 | 100 | Plus |
alph-PC | 368 | CG1906-PC | 1..364 | 1..364 | 1928 | 100 | Plus |
alph-PD | 368 | CG1906-PD | 1..364 | 1..364 | 1928 | 100 | Plus |
alph-PA | 368 | CG1906-PA | 1..364 | 1..364 | 1928 | 100 | Plus |
alph-PB | 371 | CG1906-PB | 1..364 | 1..364 | 1928 | 100 | Plus |