Clone Sequence Records
BS06805.3prime Sequence
913 bp (770 high quality bases) assembled on 2005-12-04
> BS06805.3prime
ATGGTCTAGAAAGCTTTCACTCCTCCCTCTTCTTCTTCCTTTTGGGCTTA
TCCTCGCCATCGGAATCCTGGCTGGTGGCACTGGAATCGCTGGCACTGCT
GCTGCTCTCCTGCTTGCGCTTTTCGGGCGTCTTCTTGGCCAGCTTTTCGA
TGTACTGCTTCAGCTTGTCCGGCTGCGGACTGTATGCCCAGTGGATCAAC
TGCAGGTGCAGGTCGGTGGGTGCTCCGGTCTCTGCATCGAAGAGCTTGGC
CTCCTCACTCTTAATCTGCTCCAGCAACTTGGACAGCTGACGATTGCGCA
CAATATCCCAGCTGGTCTTTTCATCCGTTTTGGGGAACATTGTGCGCAGG
TGCTTGTAGTTACCCTTGGCCTTGGAGCCGCCATAGGCTTCGAGAAACTC
CTTAGCCAACTCATCTTTGGGATCGGGCAGTTTGGTGACCACGGCGAGTG
GCAAGTATGCTCGATTGTCCTTGATACGATTCTCGGCCTCGAACTTTTCG
AGGAAATCCTCAAGTACCTGGACTCCCTCCTTTATGGCCGTGATCTTGTC
CTCGTTCTTGGTGCCTGACAGGACACGCTTGGAGCTGCCAATCAATCCCT
TGATGGCCAACCTCTGGTAGTCCGGATCTCGTTCCGCCAAAATGCTCAGC
GTTGCCTCCGCAGCAGCCTTGTCCTTGAATCCCAATCCCGGCACCGTCTC
CACCTTGTCCTCGCTCTCTGTCTTGGCATTCTTGCTGGACGCCCCTCCGC
CATTCTCCTCCAGCCACTTTTCAAAGACTCCAATGGCCGCATTGATGTTC
TTCAGCTTCTCCTCCGCCTTGNTCATTGTCAGGACTCTTTTGGCCCGGCC
AGCAAACCGCGCACCGTCAGCTTGCGATACTGCATGTCGTGACTCTCCAG
CAGCTTCAACGTC
BS06805.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18410-PA | 1068 | CG18410-RA | 234..1068 | 851..17 | 4156 | 99.8 | Minus |
| CG18410-PA | 1068 | CG18410-RA | 171..233 | 913..851 | 315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:22:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ude-RD | 1517 | CG18410-RD | 126..1023 | 913..17 | 4454 | 99.8 | Minus |
| Ude-RC | 1473 | CG18410-RC | 217..1114 | 913..17 | 4454 | 99.8 | Minus |
| Ude-RB | 1382 | CG18410-RB | 126..1023 | 913..17 | 4454 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:22:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24797954..24798583 | 17..646 | 3150 | 100 | Plus |
| 3R | 32079331 | 3R | 24799127..24799307 | 645..825 | 894 | 99.4 | Plus |
| 3R | 32079331 | 3R | 24799364..24799452 | 826..913 | 395 | 98.9 | Plus |
Blast to na_te.dros performed 2015-02-06 12:22:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 3652..3822 | 133..298 | 123 | 58.5 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 1910..1977 | 150..82 | 108 | 63.8 | Minus |
BS06805.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:30 Download gff for
BS06805.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18410-PA | 171..1068 | 17..913 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:33 Download gff for
BS06805.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18410-PA | 171..1068 | 17..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:43:05 Download gff for
BS06805.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ude-RB | 126..1023 | 17..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:51:23 Download gff for
BS06805.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ude-RB | 126..1023 | 17..913 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:51:23 Download gff for
BS06805.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24797954..24798581 | 17..644 | 100 | <- | Plus |
| 3R | 24799127..24799307 | 645..825 | 99 | <- | Plus |
| 3R | 24799364..24799452 | 826..913 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:43:05 Download gff for
BS06805.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20623676..20624303 | 17..644 | 100 | <- | Plus |
| arm_3R | 20624849..20625029 | 645..825 | 99 | <- | Plus |
| arm_3R | 20625086..20625174 | 826..913 | 98 | | Plus |
BS06805.5prime Sequence
931 bp (801 high quality bases) assembled on 2005-12-04
> BS06805.5prime
GAAGTTATCAGTCGACATGATTAAGTGCCATATGCCGTCGAGTTGGAGAC
GGCTACGCAAAATCAGTCGTATTCTAGCGCTGACAGGAAGCAGACAGATA
CTCACCCAAGTATTAGCAACCAAAGGAGCAGCAATGGCAGAGGGAGATTC
GAAATTTGGCTTCAAGGACATGGAGAAGGCGTTAGAGACGTTGAAGCTGC
TGGAGAGTCACGACATGCAGTATCGCAAGCTGACGGTGCGCGGTTTGCTT
GGCCGGGCCAAAAGAGTCCTGACAATGACCAAGGCGGAGGAGAAGCTGAA
GAACATCAATGCGGCCATTGGAGTCTTTGAAAAGTGGCTGGAGGAGAATG
GCGGAGGGGCGTCCAGCAAGAATGCCAAGACAGAGAGCGAGGACAAGGTG
GAGACGGTGCCGGGATTGGGATTCAAGGACAAGGCTGCTGCGGAGGCAAC
GCTGAGCATTTTGGCGGAACGAGATCCGGACTACCAGAGGTTGGCCATCA
AGGGATTGATTGGCAGCTCCAAGCGTGTCCTGTCAGGCACCAAGAACGAG
GACAAGATCACGGCCATAAAGGAGGGAGTCCAGGTACTTGAGGATTTCCT
CGAAAAGTTCGAGGCCGAGAATCGTATCAAGGACAATCGAGCATACTTGC
CACTCGCCGTGGTCACCAAACTGCCCGATCCCAAAGATGAGTTGGCTAAG
GAGTTTCTCGAAGCCTATGGCGGCTCCAAGGCCAAGGGTAACTACAAGCA
CCTGCGCACAATGTTCCCCAAAACGGATGAAAAGACCAGCTGGGATATTG
TGCGNCATCGTCAGCTGTCCAAGTTGCTGGAGCAGATTANGAGTGAGGGA
GGCAAGCTCTTCGATGCAGAGACCGGAGCACCCACCGACCTGCACCTGCA
GTTGATCCACTGGGCATACAGTCCGCAGCCG
BS06805.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18410-PA | 1068 | CG18410-RA | 1..832 | 17..848 | 4097 | 99.6 | Plus |
| CG18410-PA | 1068 | CG18410-RA | 837..915 | 853..931 | 395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:51:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ude-RC | 1473 | CG18410-RC | 46..961 | 16..931 | 4498 | 99.5 | Plus |
| Ude-RD | 1517 | CG18410-RD | 1..870 | 62..931 | 4268 | 99.4 | Plus |
| Ude-RB | 1382 | CG18410-RB | 1..870 | 62..931 | 4268 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:51:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24798107..24798583 | 931..455 | 2303 | 98.7 | Minus |
| 3R | 32079331 | 3R | 24799364..24799623 | 275..16 | 1300 | 100 | Minus |
| 3R | 32079331 | 3R | 24799127..24799307 | 456..276 | 905 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:51:39 has no hits.
BS06805.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:31 Download gff for
BS06805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18410-PA | 1..915 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:34 Download gff for
BS06805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18410-PA | 1..915 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:29:04 Download gff for
BS06805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ude-RC | 40..961 | 8..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:00:32 Download gff for
BS06805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ude-RC | 40..961 | 8..931 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:00:32 Download gff for
BS06805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24799127..24799307 | 276..456 | 100 | <- | Minus |
| 3R | 24799364..24799629 | 8..275 | 98 | | Minus |
| 3R | 24798107..24798581 | 457..931 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:29:04 Download gff for
BS06805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20623829..20624303 | 457..931 | 98 | <- | Minus |
| arm_3R | 20624849..20625029 | 276..456 | 100 | <- | Minus |
| arm_3R | 20625086..20625351 | 8..275 | 98 | | Minus |
BS06805.complete Sequence
1100 bp (1100 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635622
> BS06805.complete
GAAGTTATCAGTCGACATGATTAAGTGCCATATGCCGTCGAGTTGGAGAC
GGCTACGCAAAATCAGTCGTATTCTAGCGCTGACAGGAAGCAGACAGATA
CTCACCCAAGTATTAGCAACCAAAGGAGCAGCAATGGCAGAGGGAGATTC
GAAATTTGGCTTCAAGGACATGGAGAAGGCGTTAGAGACGTTGAAGCTGC
TGGAGAGTCACGACATGCAGTATCGCAAGCTGACGGTGCGCGGTTTGCTT
GGCCGGGCCAAAAGAGTCCTGACAATGACCAAGGCGGAGGAGAAGCTGAA
GAACATCAATGCGGCCATTGGAGTCTTTGAAAAGTGGCTGGAGGAGAATG
GCGGAGGGGCGTCCAGCAAGAATGCCAAGACAGAGAGCGAGGACAAGGTG
GAGACGGTGCCGGGATTGGGATTCAAGGACAAGGCTGCTGCGGAGGCAAC
GCTGAGCATTTTGGCGGAACGAGATCCGGACTACCAGAGGTTGGCCATCA
AGGGATTGATTGGCAGCTCCAAGCGTGTCCTGTCAGGCACCAAGAACGAG
GACAAGATCACGGCCATAAAGGAGGGAGTCCAGGTACTTGAGGATTTCCT
CGAAAAGTTCGAGGCCGAGAATCGTATCAAGGACAATCGAGCATACTTGC
CACTCGCCGTGGTCACCAAACTGCCCGATCCCAAAGATGAGTTGGCTAAG
GAGTTTCTCGAAGCCTATGGCGGCTCCAAGGCCAAGGGTAACTACAAGCA
CCTGCGCACAATGTTCCCCAAAACGGATGAAAAGACCAGCTGGGATATTG
TGCGCAATCGTCAGCTGTCCAAGTTGCTGGAGCAGATTAAGAGTGAGGAG
GCCAAGCTCTTCGATGCAGAGACCGGAGCACCCACCGACCTGCACCTGCA
GTTGATCCACTGGGCATACAGTCCGCAGCCGGACAAGCTGAAGCAGTACA
TCGAAAAGCTGGCCAAGAAGACGCCCGAAAAGCGCAAGCAGGAGAGCAGC
AGCAGTGCCAGCGATTCCAGTGCCACCAGCCAGGATTCCGATGGCGAGGA
TAAGCCCAAAAGGAAGAAGAAGAGGGAGGAGTGAAAGCTTTCTAGACCAT
BS06805.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:41:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ude-RD | 951 | CG18410-PD | 1..951 | 134..1084 | 4755 | 100 | Plus |
| Ude-RC | 951 | CG18410-PC | 1..951 | 134..1084 | 4755 | 100 | Plus |
| Ude-RB | 951 | CG18410-PB | 1..951 | 134..1084 | 4755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:41:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ude-RC | 1473 | CG18410-RC | 46..1114 | 16..1084 | 5345 | 100 | Plus |
| Ude-RD | 1517 | CG18410-RD | 1..1023 | 62..1084 | 5115 | 100 | Plus |
| Ude-RB | 1382 | CG18410-RB | 1..1023 | 62..1084 | 5115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:41:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24797954..24798583 | 1084..455 | 3150 | 100 | Minus |
| 3R | 32079331 | 3R | 24799364..24799623 | 275..16 | 1300 | 100 | Minus |
| 3R | 32079331 | 3R | 24799127..24799307 | 456..276 | 905 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:41:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 3652..3822 | 968..803 | 123 | 58.5 | Minus |
BS06805.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:28 Download gff for
BS06805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18410-RA | 1..1068 | 17..1084 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:04 Download gff for
BS06805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18410-RA | 40..1114 | 8..1084 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:57:32 Download gff for
BS06805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ude-RC | 47..1113 | 17..1083 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:28 Download gff for
BS06805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18410-RA | 40..1114 | 8..1084 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:51 Download gff for
BS06805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ude-RC | 47..1113 | 17..1083 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:51 Download gff for
BS06805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24797955..24798581 | 457..1083 | 100 | <- | Minus |
| 3R | 24799127..24799307 | 276..456 | 100 | <- | Minus |
| 3R | 24799364..24799622 | 17..275 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:57:32 Download gff for
BS06805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20623677..20624303 | 457..1083 | 100 | <- | Minus |
| arm_3R | 20624849..20625029 | 276..456 | 100 | <- | Minus |
| arm_3R | 20625086..20625344 | 17..275 | 100 | | Minus |
BS06805.pep Sequence
Translation from 16 to 1083
> BS06805.pep
MIKCHMPSSWRRLRKISRILALTGSRQILTQVLATKGAAMAEGDSKFGFK
DMEKALETLKLLESHDMQYRKLTVRGLLGRAKRVLTMTKAEEKLKNINAA
IGVFEKWLEENGGGASSKNAKTESEDKVETVPGLGFKDKAAAEATLSILA
ERDPDYQRLAIKGLIGSSKRVLSGTKNEDKITAIKEGVQVLEDFLEKFEA
ENRIKDNRAYLPLAVVTKLPDPKDELAKEFLEAYGGSKAKGNYKHLRTMF
PKTDEKTSWDIVRNRQLSKLLEQIKSEEAKLFDAETGAPTDLHLQLIHWA
YSPQPDKLKQYIEKLAKKTPEKRKQESSSSASDSSATSQDSDGEDKPKRK
KKREE*
BS06805.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:24:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ude-PD | 316 | CG18410-PD | 1..316 | 40..355 | 1597 | 100 | Plus |
| Ude-PC | 316 | CG18410-PC | 1..316 | 40..355 | 1597 | 100 | Plus |
| Ude-PB | 316 | CG18410-PB | 1..316 | 40..355 | 1597 | 100 | Plus |
