Clone Sequence Records
BS06806.3prime Sequence
843 bp (842 high quality bases) assembled on 2005-12-04
> BS06806.3prime
ATGGTCTAGAAAGCTTTCACTGCCCCATCAGCTGCTCAAAATCCGTTACG
TAATACTGTGCACGGCGATAGACCTCCGGCCGCACGACATTGCCACCGAA
ACCTATAAAGTAGTTGGCTGGCGGTACGGCCTCCAGATCGGTGGCTCCAT
CGCCGATCATGGTGATTAGGGAATCGTCGCTATTCTCCTTCCTTATCAGG
GCGATAGCCTCTGCCTTTCCGCCGGAACGCGAAGTGGGCTGGTTGATATC
AAAGCTATCGTATTCGCCCAAATAATCGAACAGCATCTTGTTGGCATAGA
CGTTTTTCAGGGGAATACCCAATTCATTGGCCACGGGCGCAATTAGGCAA
TCGAATCCGCCGGAGATCAAGTAAACCTGTTTTCCCTCCGCCTTCAAATG
GCTGACGAAACGCTTCACGTTTTTGCTCAGTGTACTGGGTCGCTCCTGGA
TGAAATCCCTCACTTGCTGCTGTGTCGGCCGTATGATGTTCAAGCGAATT
TTGAGGGCATCCTGGAAGGTCATGGCACCGCCCATCGCCTCCTTGGTAAC
GCGAGCCACCTCGCTCCCCTTGCCACAATATTCGGCCAGTTCGTCGATGC
CCTCCTCGCAAATCACCGTGGAGTCCACATCGAAACAGACGATCTGCGAC
TGCTGGATGACCTTGGCCGCCAACTGGGGCTGCTTGGGCGGTGTTATGGC
CGAGGCCACAGTGGTTTTCGCCGCGCCACCGGTGGTGCCATTGCCATTGC
AATTCAGCTGTTTGGTCAGCAGATTATGGCCATTTGTGGCTGCTGCAGGA
CGCGCCAAACTCAATACGGAACCGCTCATGTCGACTGATAACT
BS06806.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3705-PA | 813 | aay-RA | 1..813 | 829..17 | 4065 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:12:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aay-RA | 1529 | CG3705-RA | 292..1110 | 835..17 | 4080 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:12:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9423544..9424362 | 835..17 | 4080 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-09 01:12:16 has no hits.
BS06806.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:32 Download gff for
BS06806.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aay-PA | 1..813 | 17..829 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:36 Download gff for
BS06806.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3705-PA | 1..813 | 17..829 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:52:28 Download gff for
BS06806.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aay-RA | 284..1110 | 17..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:07:05 Download gff for
BS06806.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aay-RA | 284..1110 | 17..842 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:07:05 Download gff for
BS06806.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9423536..9424362 | 17..842 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:52:28 Download gff for
BS06806.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9416636..9417462 | 17..842 | 99 | | Minus |
BS06806.5prime Sequence
817 bp (816 high quality bases) assembled on 2005-12-04
> BS06806.5prime
GAAGTTATCAGTCGACATGAGCGGTTCCGTATTGAGTTTGGCGCGTCCTG
CAGCAGCCACAAATGGCCATAATCTGCTGACCAAACAGCTGAATTGCAAT
GGCAATGGCACCACCGGTGGCGCGGCGAAAACCACTGTGGCCTCGGCCAT
AACACCGCCCAAGCAGCCCCAGTTGGCGGCCAAGGTCATCCAGCAGTCGC
AGATCGTCTGTTTCGATGTGGACTCCACGGTGATTTGCGAGGAGGGCATC
GACGAACTGGCCGAATATTGTGGCAAGGGGAGCGAGGTGGCTCGCGTTAC
CAAGGAGGCGATGGGCGGTGCCATGACCTTCCAGGATGCCCTCAAAATTC
GCTTGAACATCATACGGCCGACACAGCAGCAAGTGAGGGATTTCATCCAG
GAGCGACCCAGTACACTGAGCAAAAACGTGAAGCGTTTCGTCAGCCATTT
GAAGGCGGAGGGAAAACAGGTTTACTTGATCTCCGGCGGATTCGATTGCC
TAATTGCGCCCGTGGCCAATGAATTGGGTATTCCCCTGAAAAACGTCTAT
GCCAACAAGATGCTGTTCGATTATTTGGGCGAATACGATAGCTTTGATAT
CAACCAGCCCACTTCGCGTTCCGGCGGAAAGGCAGAGGCTATCGCCCTGA
TAAGGAAGGAGAATAGCGACGATTCCCTAATCACCATGATCGGCGATGGA
GCCACCGATCTGGAGGCCGTACCGCCAGCCAACTACTTTATAGGTTTCGG
TGGCAATGTCGTGCGGCCGGAGGTCTATCGCCGTGCACAGTATTACGTAA
CGGATTTTGAGCAGCTG
BS06806.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3705-PA | 813 | aay-RA | 1..801 | 17..817 | 4005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:24:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aay-RA | 1529 | CG3705-RA | 292..1098 | 11..817 | 4020 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:24:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9423544..9424350 | 11..817 | 4020 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-09 22:24:06 has no hits.
BS06806.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:33 Download gff for
BS06806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aay-PA | 1..801 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:37 Download gff for
BS06806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3705-PA | 1..801 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:25:04 Download gff for
BS06806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aay-RA | 284..1098 | 4..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:44:10 Download gff for
BS06806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aay-RA | 284..1098 | 4..817 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:44:10 Download gff for
BS06806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9423536..9424350 | 4..817 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:25:04 Download gff for
BS06806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9416636..9417450 | 4..817 | 99 | | Plus |
BS06806.complete Sequence
845 bp (845 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635623
> BS06806.complete
GAAGTTATCAGTCGACATGAGCGGTTCCGTATTGAGTTTGGCGCGTCCTG
CAGCAGCCACAAATGGCCATAATCTGCTGACCAAACAGCTGAATTGCAAT
GGCAATGGCACCACCGGTGGCGCGGCGAAAACCACTGTGGCCTCGGCCAT
AACACCGCCCAAGCAGCCCCAGTTGGCGGCCAAGGTCATCCAGCAGTCGC
AGATCGTCTGTTTCGATGTGGACTCCACGGTGATTTGCGAGGAGGGCATC
GACGAACTGGCCGAATATTGTGGCAAGGGGAGCGAGGTGGCTCGCGTTAC
CAAGGAGGCGATGGGCGGTGCCATGACCTTCCAGGATGCCCTCAAAATTC
GCTTGAACATCATACGGCCGACACAGCAGCAAGTGAGGGATTTCATCCAG
GAGCGACCCAGTACACTGAGCAAAAACGTGAAGCGTTTCGTCAGCCATTT
GAAGGCGGAGGGAAAACAGGTTTACTTGATCTCCGGCGGATTCGATTGCC
TAATTGCGCCCGTGGCCAATGAATTGGGTATTCCCCTGAAAAACGTCTAT
GCCAACAAGATGCTGTTCGATTATTTGGGCGAATACGATAGCTTTGATAT
CAACCAGCCCACTTCGCGTTCCGGCGGAAAGGCAGAGGCTATCGCCCTGA
TAAGGAAGGAGAATAGCGACGATTCCCTAATCACCATGATCGGCGATGGA
GCCACCGATCTGGAGGCCGTACCGCCAGCCAACTACTTTATAGGTTTCGG
TGGCAATGTCGTGCGGCCGGAGGTCTATCGCCGTGCACAGTATTACGTAA
CGGATTTTGAGCAGCTGATGGGGCAGTGAAAGCTTTCTAGACCAT
BS06806.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:19:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aay-RA | 813 | CG3705-PA | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:19:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aay-RA | 1529 | CG3705-RA | 292..1110 | 11..829 | 4080 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:19:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9423544..9424362 | 11..829 | 4080 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:19:42 has no hits.
BS06806.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:21 Download gff for
BS06806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aay-RA | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:20 Download gff for
BS06806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aay-RA | 284..1110 | 4..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:29:20 Download gff for
BS06806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aay-RA | 298..1109 | 17..828 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:22 Download gff for
BS06806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aay-RA | 284..1110 | 4..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:53 Download gff for
BS06806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aay-RA | 298..1109 | 17..828 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:53 Download gff for
BS06806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9423550..9424361 | 17..828 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:29:20 Download gff for
BS06806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9416650..9417461 | 17..828 | 100 | | Plus |
BS06806.pep Sequence
Translation from 16 to 828
> BS06806.pep
MSGSVLSLARPAAATNGHNLLTKQLNCNGNGTTGGAAKTTVASAITPPKQ
PQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEAMG
GAMTFQDALKIRLNIIRPTQQQVRDFIQERPSTLSKNVKRFVSHLKAEGK
QVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGEYDSFDINQPTS
RSGGKAEAIALIRKENSDDSLITMIGDGATDLEAVPPANYFIGFGGNVVR
PEVYRRAQYYVTDFEQLMGQ*
BS06806.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aay-PA | 270 | CG3705-PA | 1..270 | 1..270 | 1380 | 100 | Plus |
