Clone BS06808 Report

Search the DGRC for BS06808

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:68
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG4991-RA
Protein status:BS06808.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06808.3prime Sequence

913 bp (752 high quality bases) assembled on 2005-12-04

> BS06808.3prime
ATGGTCTAGAAAGCTTCTACTTAAACTCCTTGACGATCTCCACGATGCTC
TGGTAGGTGCCAGTGACGATGCCCAGCACGGCCACCGTCAGGATGAGAAT
GTTTTTGATGTAGGACCACACACCCAGTGCCTTGGGCACCTGCGCCCGCG
TCACGAAGTCGATCAGCACCGGAATCACAAAAGCCAGACAGGTGGAGCAC
AGTGCTCCGATCAGCGAGATGAACAGATTGAGCTTGGGAACGACCAGCGC
AACGCCAAATGTCATCATCACCATAAAGAAACGGAGGCACACCTGCGAGG
TAATGGGATACTTTTGAGTGCAGTTATTAGACCTCTTTAGTGGGGGCCAC
AAAATCTTAATCATCACAAAGAACTGGATGGGGTAGCCCAGGAAAACGCC
CAAAGCAGCGATCACTTTCACCACCTGCGAAAAAACTTCCTCCACTACAA
GATTTAGCGTTATGCTGCCGGCTACCTCCTCGCCCCATCGCACATAGCTC
ACGAATCCGGTGAAGATGAACAGGGCCGTGGTAAAGAACATCGTGGAGTT
GAGCACTCCGAACCGGGTGCTAAACTTCTCCGGTCGGCGCATCGAGTTCC
GCAGCGGCAGGATGAGGGCGATGCCCTCGTAAGAGAACAGAGCGGTACCA
AAGAACAGGGCCAACTGAGCTCCGCCAGTGAAGAGGTGCCTGTCGCCAAC
GGACGGCATGGGTCCATCCGAGAAGGCTATGGTCAGGGTGGCAATCAAGC
CGAAGAGCAGCGCCACATTGGCAAACAGCGACACGGGCGAGATGTACTTC
AGGTTGGTCATCAGCGAGGGTATCATCGCCGGTAGCAGGGTGATCAGCAT
CACCATGCTCATGCTGATAACGATGCCCGTCTGCTGGAGGACCTGGTGCA
GATTTTCCGTGAT

BS06808.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG4991-PB 1380 CG4991-RB 484..1380 913..17 4435 99.7 Minus
CG4991-PA 1380 CG4991-RA 484..1380 913..17 4435 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:18:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG4991-RE 2084 CG4991-RE 711..1607 913..17 4455 99.8 Minus
CG4991-RD 2012 CG4991-RD 639..1535 913..17 4455 99.8 Minus
CG4991-RF 2177 CG4991-RF 804..1700 913..17 4455 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:18:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17102922..17103400 913..435 2365 99.6 Minus
X 23542271 X 17103844..17104085 258..17 1210 100 Minus
X 23542271 X 17103509..17103684 434..259 880 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:18:04 has no hits.

BS06808.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:36 Download gff for BS06808.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4991-PB 484..1380 17..913 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:42 Download gff for BS06808.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4991-PA 484..1380 17..913 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:03:17 Download gff for BS06808.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4991-RF 804..1707 5..913 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:45 Download gff for BS06808.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4991-RF 804..1707 5..913 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:45 Download gff for BS06808.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17102922..17103400 435..913 99 -> Minus
X 17103509..17103684 259..434 100 -> Minus
X 17103844..17104092 5..258 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:03:17 Download gff for BS06808.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16996955..16997433 435..913 99 -> Minus
arm_X 16997542..16997717 259..434 100 -> Minus
arm_X 16997877..16998125 5..258 98   Minus

BS06808.5prime Sequence

859 bp (832 high quality bases) assembled on 2005-12-04

> BS06808.5prime
GAAGTTATCAGTCGACATGGGAAGAACACTGGAAATAACCGGAAGACAGA
ATGATAAGAGTCTGGAGAAGAATCCGGAGCGCTTCACGAAGAATGTGACG
GAGAAAGGCGCCGATCCTGAGAACGGAGACCCGGTGCGCAGGCGCGGCCA
TGAGACCAGCGAACTGGAGGCGGCTACGCATCTCTTCAAGGGCAGCGTCG
GTGCCGGACTCTTCGCCATGGGCGATTGCTTCAAGAACGGCGGATTGGCA
GGAGCAACCATCCTGCTGCCCATCATTGCGGTGATGTGCGTCCACTGCGA
GCGCATGCTGATCCGTGGTTCCGTGCTGGCCGTGGAGCGCACGCCCGGCG
TGGACTTTCTCGACTATCCGGAAACAGTGGAGAAGTGCTTCGAGCACGGG
CCACGCCCACTGCGAAAAATGTCGCGCGTAATGAAGCTGATCGTTGAAAT
GTTCCTCTGCGTCACGCAGTTTGGCTTCTGCGCCATCTACTTTGTCTTCA
TCACGGAAAATCTGCACCAGGTCCTCCAGCAGAACGGCATCGTTATCAGC
ATGAGCATGGTGATGCTGATCACCCTGCTACCGGCGATGATACCCTCGCT
GATGACCAACCTGAAGTACATCTCGCCCGTGTCGCTGTTTGCCAATGTGG
CGCTGCTCTTCGGCTTGATTGCCACCCTGACCATAGCCTTCTCGGATGGA
CCCATGCCGTCCGTTGGCGACAGGCACCTCTTCACTGGCGGAGCTCAGTT
GGCCCTGTTCTTTGGTACCGCTCTGTTCTCTTACGAGGGCATCGCCCTCA
TCCTGCCGCTGCGGAACTCGATGCGCCGACCGGAGAAGTTTAGCACCCGG
TTCGGAGTG

BS06808.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4991-PB 1380 CG4991-RB 1..843 17..859 4215 100 Plus
CG4991-PA 1380 CG4991-RA 1..843 17..859 4215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG4991-RE 2084 CG4991-RE 224..1070 13..859 4220 99.9 Plus
CG4991-RD 2012 CG4991-RD 152..998 13..859 4220 99.9 Plus
CG4991-RF 2177 CG4991-RF 317..1163 13..859 4220 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17102435..17103281 13..859 4220 99.9 Plus
Blast to na_te.dros performed on 2015-02-10 21:40:51 has no hits.

BS06808.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:38 Download gff for BS06808.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4991-PB 1..843 17..859 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:43 Download gff for BS06808.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4991-PA 1..843 17..859 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:42:39 Download gff for BS06808.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4991-RF 317..1163 13..859 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:39 Download gff for BS06808.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4991-RF 317..1163 13..859 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:39 Download gff for BS06808.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17102435..17103281 13..859 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:42:39 Download gff for BS06808.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16996468..16997314 13..859 99   Plus

BS06808.complete Sequence

1412 bp (1412 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635625

> BS06808.complete
GAAGTTATCAGTCGACATGGGAAGAACACTGGAAATAACCGGAAGACAGA
ATGATAAGAGTCTGGAGAAGAATCCGGAGCGCTTCACGAAGAATGTGACG
GAGAAAGGCGCCGATCCTGAGAACGGAGACCCGGTGCGCAGGCGCGGCCA
TGAGACCAGCGAACTGGAGGCGGCTACGCATCTCTTCAAGGGCAGCGTCG
GTGCCGGACTCTTCGCCATGGGCGATTGCTTCAAGAACGGCGGATTGGCA
GGAGCAACCATCCTGCTGCCCATCATTGCGGTGATGTGCGTCCACTGCGA
GCGCATGCTGATCCGTGGTTCCGTGCTGGCCGTGGAGCGCACGCCCGGCG
TGGACTTTCTCGACTATCCGGAAACAGTGGAGAAGTGCTTCGAGCACGGG
CCACGCCCACTGCGAAAAATGTCGCGCGTAATGAAGCTGATCGTTGAAAT
GTTCCTCTGCGTCACGCAGTTTGGCTTCTGCGCCATCTACTTTGTCTTCA
TCACGGAAAATCTGCACCAGGTCCTCCAGCAGAACGGCATCGTTATCAGC
ATGAGCATGGTGATGCTGATCACCCTGCTACCGGCGATGATACCCTCGCT
GATGACCAACCTGAAGTACATCTCGCCCGTGTCGCTGTTTGCCAATGTGG
CGCTGCTCTTCGGCTTGATTGCCACCCTGACCATAGCCTTCTCGGATGGA
CCCATGCCGTCCGTTGGCGACAGGCACCTCTTCACTGGCGGAGCTCAGTT
GGCCCTGTTCTTTGGTACCGCTCTGTTCTCTTACGAGGGCATCGCCCTCA
TCCTGCCGCTGCGGAACTCGATGCGCCGACCGGAGAAGTTTAGCACCCGG
TTCGGAGTGCTCAACTCCACGATGTTCTTTACCACGGCCCTGTTCATCTT
CACCGGATTCGTGAGCTATGTGCGATGGGGCGAGGAGGTAGCCGGCAGCA
TAACGCTAAATCTTGTAGTGGAGGAAGTTTTTTCGCAGGTGGTGAAAGTG
ATCGCTGCTTTGGGCGTTTTCCTGGGCTACCCCATCCAGTTCTTTGTGAT
GATTAAGATTTTGTGGCCCCCACTAAAGAGGTCTAATAACTGCACTCAAA
AGTATCCCATTACCTCGCAGGTGTGCCTCCGTTTCTTTATGGTGATGATG
ACATTTGGCGTTGCGCTGGTCGTTCCCAAGCTCAATCTGTTCATCTCGCT
GATCGGAGCACTGTGCTCCACCTGTCTGGCTTTTGTGATTCCGGTGCTGA
TCGACTTCGTGACGCGGGCGCAGGTGCCCAAGGCACTGGGTGTGTGGTCC
TACATCAAAAACATTCTCATCCTGACGGTGGCCGTGCTGGGCATCGTCAC
TGGCACCTACCAGAGCATCGTGGAGATCGTCAAGGAGTTTAAGTAGAAGC
TTTCTAGACCAT

BS06808.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4991-RD 1491 CG4991-PD 108..1491 13..1396 6905 99.9 Plus
CG4991-RE 1380 CG4991-PE 1..1380 17..1396 6900 100 Plus
CG4991-RF 1380 CG4991-PF 1..1380 17..1396 6900 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:25:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4991-RE 2084 CG4991-RE 224..1607 13..1396 6905 99.9 Plus
CG4991-RD 2012 CG4991-RD 152..1535 13..1396 6905 99.9 Plus
CG4991-RF 2177 CG4991-RF 317..1700 13..1396 6905 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:25:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17102435..17103400 13..978 4815 99.9 Plus
X 23542271 X 17103844..17104085 1155..1396 1210 100 Plus
X 23542271 X 17103509..17103684 979..1154 880 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:25:57 has no hits.

BS06808.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:23 Download gff for BS06808.complete
Subject Subject Range Query Range Percent Splice Strand
CG4991-RC 51..1434 13..1396 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:07 Download gff for BS06808.complete
Subject Subject Range Query Range Percent Splice Strand
CG4991-RC 51..1441 13..1408 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:14:59 Download gff for BS06808.complete
Subject Subject Range Query Range Percent Splice Strand
CG4991-RF 321..1700 17..1396 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:23 Download gff for BS06808.complete
Subject Subject Range Query Range Percent Splice Strand
CG4991-RC 51..1441 13..1408 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:28 Download gff for BS06808.complete
Subject Subject Range Query Range Percent Splice Strand
CG4991-RF 321..1700 17..1396 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:28 Download gff for BS06808.complete
Subject Subject Range Query Range Percent Splice Strand
X 17103844..17104085 1155..1396 100   Plus
X 17102439..17103400 17..978 100 -> Plus
X 17103509..17103684 979..1154 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:14:59 Download gff for BS06808.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16997877..16998118 1155..1396 100   Plus
arm_X 16996472..16997433 17..978 100 -> Plus
arm_X 16997542..16997717 979..1154 100 -> Plus

BS06808.pep Sequence

Translation from 16 to 1395

> BS06808.pep
MGRTLEITGRQNDKSLEKNPERFTKNVTEKGADPENGDPVRRRGHETSEL
EAATHLFKGSVGAGLFAMGDCFKNGGLAGATILLPIIAVMCVHCERMLIR
GSVLAVERTPGVDFLDYPETVEKCFEHGPRPLRKMSRVMKLIVEMFLCVT
QFGFCAIYFVFITENLHQVLQQNGIVISMSMVMLITLLPAMIPSLMTNLK
YISPVSLFANVALLFGLIATLTIAFSDGPMPSVGDRHLFTGGAQLALFFG
TALFSYEGIALILPLRNSMRRPEKFSTRFGVLNSTMFFTTALFIFTGFVS
YVRWGEEVAGSITLNLVVEEVFSQVVKVIAALGVFLGYPIQFFVMIKILW
PPLKRSNNCTQKYPITSQVCLRFFMVMMTFGVALVVPKLNLFISLIGALC
STCLAFVIPVLIDFVTRAQVPKALGVWSYIKNILILTVAVLGIVTGTYQS
IVEIVKEFK*

BS06808.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG4991-PE 459 CG4991-PE 1..459 1..459 2342 100 Plus
CG4991-PD 496 CG4991-PD 38..496 1..459 2342 100 Plus
CG4991-PF 459 CG4991-PF 1..459 1..459 2342 100 Plus
CG4991-PA 459 CG4991-PA 1..459 1..459 2342 100 Plus
CG4991-PB 459 CG4991-PB 1..459 1..459 2342 100 Plus