Clone Sequence Records
BS06808.3prime Sequence
913 bp (752 high quality bases) assembled on 2005-12-04
> BS06808.3prime
ATGGTCTAGAAAGCTTCTACTTAAACTCCTTGACGATCTCCACGATGCTC
TGGTAGGTGCCAGTGACGATGCCCAGCACGGCCACCGTCAGGATGAGAAT
GTTTTTGATGTAGGACCACACACCCAGTGCCTTGGGCACCTGCGCCCGCG
TCACGAAGTCGATCAGCACCGGAATCACAAAAGCCAGACAGGTGGAGCAC
AGTGCTCCGATCAGCGAGATGAACAGATTGAGCTTGGGAACGACCAGCGC
AACGCCAAATGTCATCATCACCATAAAGAAACGGAGGCACACCTGCGAGG
TAATGGGATACTTTTGAGTGCAGTTATTAGACCTCTTTAGTGGGGGCCAC
AAAATCTTAATCATCACAAAGAACTGGATGGGGTAGCCCAGGAAAACGCC
CAAAGCAGCGATCACTTTCACCACCTGCGAAAAAACTTCCTCCACTACAA
GATTTAGCGTTATGCTGCCGGCTACCTCCTCGCCCCATCGCACATAGCTC
ACGAATCCGGTGAAGATGAACAGGGCCGTGGTAAAGAACATCGTGGAGTT
GAGCACTCCGAACCGGGTGCTAAACTTCTCCGGTCGGCGCATCGAGTTCC
GCAGCGGCAGGATGAGGGCGATGCCCTCGTAAGAGAACAGAGCGGTACCA
AAGAACAGGGCCAACTGAGCTCCGCCAGTGAAGAGGTGCCTGTCGCCAAC
GGACGGCATGGGTCCATCCGAGAAGGCTATGGTCAGGGTGGCAATCAAGC
CGAAGAGCAGCGCCACATTGGCAAACAGCGACACGGGCGAGATGTACTTC
AGGTTGGTCATCAGCGAGGGTATCATCGCCGGTAGCAGGGTGATCAGCAT
CACCATGCTCATGCTGATAACGATGCCCGTCTGCTGGAGGACCTGGTGCA
GATTTTCCGTGAT
BS06808.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4991-PB | 1380 | CG4991-RB | 484..1380 | 913..17 | 4435 | 99.7 | Minus |
CG4991-PA | 1380 | CG4991-RA | 484..1380 | 913..17 | 4435 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:18:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4991-RE | 2084 | CG4991-RE | 711..1607 | 913..17 | 4455 | 99.8 | Minus |
CG4991-RD | 2012 | CG4991-RD | 639..1535 | 913..17 | 4455 | 99.8 | Minus |
CG4991-RF | 2177 | CG4991-RF | 804..1700 | 913..17 | 4455 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:18:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17102922..17103400 | 913..435 | 2365 | 99.6 | Minus |
X | 23542271 | X | 17103844..17104085 | 258..17 | 1210 | 100 | Minus |
X | 23542271 | X | 17103509..17103684 | 434..259 | 880 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:18:04 has no hits.
BS06808.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:36 Download gff for
BS06808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4991-PB | 484..1380 | 17..913 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:42 Download gff for
BS06808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4991-PA | 484..1380 | 17..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:03:17 Download gff for
BS06808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4991-RF | 804..1707 | 5..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:45 Download gff for
BS06808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4991-RF | 804..1707 | 5..913 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:45 Download gff for
BS06808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17102922..17103400 | 435..913 | 99 | -> | Minus |
X | 17103509..17103684 | 259..434 | 100 | -> | Minus |
X | 17103844..17104092 | 5..258 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:03:17 Download gff for
BS06808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16996955..16997433 | 435..913 | 99 | -> | Minus |
arm_X | 16997542..16997717 | 259..434 | 100 | -> | Minus |
arm_X | 16997877..16998125 | 5..258 | 98 | | Minus |
BS06808.5prime Sequence
859 bp (832 high quality bases) assembled on 2005-12-04
> BS06808.5prime
GAAGTTATCAGTCGACATGGGAAGAACACTGGAAATAACCGGAAGACAGA
ATGATAAGAGTCTGGAGAAGAATCCGGAGCGCTTCACGAAGAATGTGACG
GAGAAAGGCGCCGATCCTGAGAACGGAGACCCGGTGCGCAGGCGCGGCCA
TGAGACCAGCGAACTGGAGGCGGCTACGCATCTCTTCAAGGGCAGCGTCG
GTGCCGGACTCTTCGCCATGGGCGATTGCTTCAAGAACGGCGGATTGGCA
GGAGCAACCATCCTGCTGCCCATCATTGCGGTGATGTGCGTCCACTGCGA
GCGCATGCTGATCCGTGGTTCCGTGCTGGCCGTGGAGCGCACGCCCGGCG
TGGACTTTCTCGACTATCCGGAAACAGTGGAGAAGTGCTTCGAGCACGGG
CCACGCCCACTGCGAAAAATGTCGCGCGTAATGAAGCTGATCGTTGAAAT
GTTCCTCTGCGTCACGCAGTTTGGCTTCTGCGCCATCTACTTTGTCTTCA
TCACGGAAAATCTGCACCAGGTCCTCCAGCAGAACGGCATCGTTATCAGC
ATGAGCATGGTGATGCTGATCACCCTGCTACCGGCGATGATACCCTCGCT
GATGACCAACCTGAAGTACATCTCGCCCGTGTCGCTGTTTGCCAATGTGG
CGCTGCTCTTCGGCTTGATTGCCACCCTGACCATAGCCTTCTCGGATGGA
CCCATGCCGTCCGTTGGCGACAGGCACCTCTTCACTGGCGGAGCTCAGTT
GGCCCTGTTCTTTGGTACCGCTCTGTTCTCTTACGAGGGCATCGCCCTCA
TCCTGCCGCTGCGGAACTCGATGCGCCGACCGGAGAAGTTTAGCACCCGG
TTCGGAGTG
BS06808.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4991-PB | 1380 | CG4991-RB | 1..843 | 17..859 | 4215 | 100 | Plus |
CG4991-PA | 1380 | CG4991-RA | 1..843 | 17..859 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:40:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4991-RE | 2084 | CG4991-RE | 224..1070 | 13..859 | 4220 | 99.9 | Plus |
CG4991-RD | 2012 | CG4991-RD | 152..998 | 13..859 | 4220 | 99.9 | Plus |
CG4991-RF | 2177 | CG4991-RF | 317..1163 | 13..859 | 4220 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:40:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17102435..17103281 | 13..859 | 4220 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:40:51 has no hits.
BS06808.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:38 Download gff for
BS06808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4991-PB | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:43 Download gff for
BS06808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4991-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:42:39 Download gff for
BS06808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4991-RF | 317..1163 | 13..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:39 Download gff for
BS06808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4991-RF | 317..1163 | 13..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:39 Download gff for
BS06808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17102435..17103281 | 13..859 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:42:39 Download gff for
BS06808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16996468..16997314 | 13..859 | 99 | | Plus |
BS06808.complete Sequence
1412 bp (1412 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635625
> BS06808.complete
GAAGTTATCAGTCGACATGGGAAGAACACTGGAAATAACCGGAAGACAGA
ATGATAAGAGTCTGGAGAAGAATCCGGAGCGCTTCACGAAGAATGTGACG
GAGAAAGGCGCCGATCCTGAGAACGGAGACCCGGTGCGCAGGCGCGGCCA
TGAGACCAGCGAACTGGAGGCGGCTACGCATCTCTTCAAGGGCAGCGTCG
GTGCCGGACTCTTCGCCATGGGCGATTGCTTCAAGAACGGCGGATTGGCA
GGAGCAACCATCCTGCTGCCCATCATTGCGGTGATGTGCGTCCACTGCGA
GCGCATGCTGATCCGTGGTTCCGTGCTGGCCGTGGAGCGCACGCCCGGCG
TGGACTTTCTCGACTATCCGGAAACAGTGGAGAAGTGCTTCGAGCACGGG
CCACGCCCACTGCGAAAAATGTCGCGCGTAATGAAGCTGATCGTTGAAAT
GTTCCTCTGCGTCACGCAGTTTGGCTTCTGCGCCATCTACTTTGTCTTCA
TCACGGAAAATCTGCACCAGGTCCTCCAGCAGAACGGCATCGTTATCAGC
ATGAGCATGGTGATGCTGATCACCCTGCTACCGGCGATGATACCCTCGCT
GATGACCAACCTGAAGTACATCTCGCCCGTGTCGCTGTTTGCCAATGTGG
CGCTGCTCTTCGGCTTGATTGCCACCCTGACCATAGCCTTCTCGGATGGA
CCCATGCCGTCCGTTGGCGACAGGCACCTCTTCACTGGCGGAGCTCAGTT
GGCCCTGTTCTTTGGTACCGCTCTGTTCTCTTACGAGGGCATCGCCCTCA
TCCTGCCGCTGCGGAACTCGATGCGCCGACCGGAGAAGTTTAGCACCCGG
TTCGGAGTGCTCAACTCCACGATGTTCTTTACCACGGCCCTGTTCATCTT
CACCGGATTCGTGAGCTATGTGCGATGGGGCGAGGAGGTAGCCGGCAGCA
TAACGCTAAATCTTGTAGTGGAGGAAGTTTTTTCGCAGGTGGTGAAAGTG
ATCGCTGCTTTGGGCGTTTTCCTGGGCTACCCCATCCAGTTCTTTGTGAT
GATTAAGATTTTGTGGCCCCCACTAAAGAGGTCTAATAACTGCACTCAAA
AGTATCCCATTACCTCGCAGGTGTGCCTCCGTTTCTTTATGGTGATGATG
ACATTTGGCGTTGCGCTGGTCGTTCCCAAGCTCAATCTGTTCATCTCGCT
GATCGGAGCACTGTGCTCCACCTGTCTGGCTTTTGTGATTCCGGTGCTGA
TCGACTTCGTGACGCGGGCGCAGGTGCCCAAGGCACTGGGTGTGTGGTCC
TACATCAAAAACATTCTCATCCTGACGGTGGCCGTGCTGGGCATCGTCAC
TGGCACCTACCAGAGCATCGTGGAGATCGTCAAGGAGTTTAAGTAGAAGC
TTTCTAGACCAT
BS06808.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:25:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4991-RD | 1491 | CG4991-PD | 108..1491 | 13..1396 | 6905 | 99.9 | Plus |
CG4991-RE | 1380 | CG4991-PE | 1..1380 | 17..1396 | 6900 | 100 | Plus |
CG4991-RF | 1380 | CG4991-PF | 1..1380 | 17..1396 | 6900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:25:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4991-RE | 2084 | CG4991-RE | 224..1607 | 13..1396 | 6905 | 99.9 | Plus |
CG4991-RD | 2012 | CG4991-RD | 152..1535 | 13..1396 | 6905 | 99.9 | Plus |
CG4991-RF | 2177 | CG4991-RF | 317..1700 | 13..1396 | 6905 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:25:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17102435..17103400 | 13..978 | 4815 | 99.9 | Plus |
X | 23542271 | X | 17103844..17104085 | 1155..1396 | 1210 | 100 | Plus |
X | 23542271 | X | 17103509..17103684 | 979..1154 | 880 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:25:57 has no hits.
BS06808.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:23 Download gff for
BS06808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4991-RC | 51..1434 | 13..1396 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:07 Download gff for
BS06808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4991-RC | 51..1441 | 13..1408 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:14:59 Download gff for
BS06808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4991-RF | 321..1700 | 17..1396 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:23 Download gff for
BS06808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4991-RC | 51..1441 | 13..1408 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:28 Download gff for
BS06808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4991-RF | 321..1700 | 17..1396 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:28 Download gff for
BS06808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17103844..17104085 | 1155..1396 | 100 | | Plus |
X | 17102439..17103400 | 17..978 | 100 | -> | Plus |
X | 17103509..17103684 | 979..1154 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:14:59 Download gff for
BS06808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16997877..16998118 | 1155..1396 | 100 | | Plus |
arm_X | 16996472..16997433 | 17..978 | 100 | -> | Plus |
arm_X | 16997542..16997717 | 979..1154 | 100 | -> | Plus |
BS06808.pep Sequence
Translation from 16 to 1395
> BS06808.pep
MGRTLEITGRQNDKSLEKNPERFTKNVTEKGADPENGDPVRRRGHETSEL
EAATHLFKGSVGAGLFAMGDCFKNGGLAGATILLPIIAVMCVHCERMLIR
GSVLAVERTPGVDFLDYPETVEKCFEHGPRPLRKMSRVMKLIVEMFLCVT
QFGFCAIYFVFITENLHQVLQQNGIVISMSMVMLITLLPAMIPSLMTNLK
YISPVSLFANVALLFGLIATLTIAFSDGPMPSVGDRHLFTGGAQLALFFG
TALFSYEGIALILPLRNSMRRPEKFSTRFGVLNSTMFFTTALFIFTGFVS
YVRWGEEVAGSITLNLVVEEVFSQVVKVIAALGVFLGYPIQFFVMIKILW
PPLKRSNNCTQKYPITSQVCLRFFMVMMTFGVALVVPKLNLFISLIGALC
STCLAFVIPVLIDFVTRAQVPKALGVWSYIKNILILTVAVLGIVTGTYQS
IVEIVKEFK*
BS06808.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4991-PE | 459 | CG4991-PE | 1..459 | 1..459 | 2342 | 100 | Plus |
CG4991-PD | 496 | CG4991-PD | 38..496 | 1..459 | 2342 | 100 | Plus |
CG4991-PF | 459 | CG4991-PF | 1..459 | 1..459 | 2342 | 100 | Plus |
CG4991-PA | 459 | CG4991-PA | 1..459 | 1..459 | 2342 | 100 | Plus |
CG4991-PB | 459 | CG4991-PB | 1..459 | 1..459 | 2342 | 100 | Plus |