Clone BS06809 Report

Search the DGRC for BS06809

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:68
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptPdk-RA
Protein status:BS06809.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06809.3prime Sequence

919 bp (890 high quality bases) assembled on 2005-12-04

> BS06809.3prime
ATGGTCTAGAAAGCTTCTACTGGTTGACAGCGCTCGTCTTCTTCTTTTTA
GCGTATTTTACCTGATTGGACCAGTCACCCGTGGGCACGGTGGCGCGATA
GAACTTTGAGCTTGTCTTGTTGAAGATCGGCAGCAATTCGTTTGCTTCGT
CGGACAGAGCCTTTAGATAGATGATTGCATCTGTTCCGAATCCTTCGCAG
GAGAGCAGCACAATGTCGCCATGGAAATAGCGGGCGTAAAGCCTTGAGAT
CGGCAGACCGTATCCATAGCCCGCTAATGGCACCGTATGCAGATCCGACT
TCGAGGGCTGCGGCGCTGTGCTGTACATATACTTGAAGAGCTGATCGGTC
TGGGAGCGGGGAATGCCGCCTCCCTGGTCAGAAATTTTCACACAGATGTC
CTCCTTGCCCTTGCAAATGGCTACTTTCAAGGGGGGCAATGTGTCATTGT
TGTCATGGCCATGGTGCTCTACAACAGCTCGCATAGAGTTCTTGAAGAGC
TCGAAAAGCATGTAGTACAGGTGCGAGGGCACGTAAACGGTGCGGATGGG
CAGGTTGTCTCCAGGCTCGCTGCTGTGCTGCTGGATCTCCAATGCCGGAC
TGGTCAGGTAGTACTGATCGCATAGGAATCGCGCATTCTCGTAAGCATCG
CGAACCACATCCGACAGATCACAGGCGGGATCCAGGCAACCAATATGGCG
GCCACCCGCATGTGGATTTCCGCCAAAGAGAAGGGTGTGCTGATTTATCA
GCATTCGAATGCTGATGCGAGACATGTAGAGCCTGTCGAGAAAGTACTGA
ATGGAACTCTCTGTAGGCGCATCCACCTGGCCGCCCTCGTTCTCCTTCAT
TTCGATCACACCCTGNGCCATCGTTTGCACCACATCGTTGTGCCGATTCC
TAATGAGATCCAAATCGGC

BS06809.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8808-PA 1242 Pdk-RA 340..1242 919..17 4496 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:42:52
Subject Length Description Subject Range Query Range Score Percent Strand
Pdk-RC 2732 CG8808-RC 1151..2054 919..16 4509 99.9 Minus
Pdk-RA 2080 CG8808-RA 1151..2054 919..16 4509 99.9 Minus
Pdk-RD 2440 CG8808-RD 1151..2008 919..62 4279 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:42:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9432490..9433065 735..160 2880 100 Minus
2R 25286936 2R 9432242..9432425 919..736 909 99.5 Minus
2R 25286936 2R 9433128..9433274 162..16 735 100 Minus
Blast to na_te.dros performed on 2015-02-02 20:42:49 has no hits.

BS06809.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:39 Download gff for BS06809.3prime
Subject Subject Range Query Range Percent Splice Strand
Pdk-PA 340..1242 17..919 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:44 Download gff for BS06809.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8808-PA 340..1242 17..919 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:05:26 Download gff for BS06809.3prime
Subject Subject Range Query Range Percent Splice Strand
Pdk-RA 1151..2054 16..919 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:17:45 Download gff for BS06809.3prime
Subject Subject Range Query Range Percent Splice Strand
Pdk-RA 1151..2054 16..919 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:17:45 Download gff for BS06809.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9432242..9432425 736..919 99 -> Minus
2R 9432490..9433064 161..735 100 -> Minus
2R 9433130..9433274 16..160 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:05:26 Download gff for BS06809.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5319747..5319930 736..919 99 -> Minus
arm_2R 5319995..5320569 161..735 100 -> Minus
arm_2R 5320635..5320779 16..160 100   Minus

BS06809.5prime Sequence

907 bp (851 high quality bases) assembled on 2005-12-04

> BS06809.5prime
GAAGTTATCAGTCGACATGCGCCTGTTTCCAGTCCGATTCTCAGCCGCCT
CCTCGTCGATGGCGAGTTTGGCCAAAATGCTCGACTTTTACTCGGGCTTC
AACCCCTCGCCCCTCTCGATAAAGCAGTTCATGGACTTTGGTCAGAATGC
CTGCGAGAAGAAATCGTACATATTCCTGCGCAAGGAACTGCCTGTTCGAC
TGGCGAATATCATGAAGGAGATCGCCCTTCTGCCGGATAACCTGTTGCAC
ACCAGATCCGTAAGCGAAGTTAGTTCCTGGTATGTCAAGAGTTTCGAGGA
TGTGCTGGTGTACGAGAAAGCAGAGCCCACCCACGACAATCTGCAAAAGT
TTGTGGCCGATTTGGATCTCATTAGGAATCGGCACAACGATGTGGTGCAA
ACGATGGCCCAGGGTGTGATCGAAATGAAGGAGAACGAGGGCGGCCAGGT
GGATGCGCCTACAGAGAGTTCCATTCAGTACTTTCTCGACAGGCTCTACA
TGTCTCGCATCAGCATTCGAATGCTGATAAATCAGCACACCCTTCTCTTT
GGCGGAAATCCACATGCGGGTGGCCGCCATATTGGTTGCCTGGATCCCGC
CTGTGATCTGTCGGATGTGGTTCGCGATGCTTACGAGAATGCGCGATTCC
TATGCGATCAGTACTACCTGACCAGTCCGGCATTGGAGATCCAGCAGCAC
AGCAGCGAGCCTGGAGACAACCTGCCCATCCGCACCGTTTACGTGCCCTC
GCACCTGTACTACATGCTTTTCGAGCTCTTCAAGAACTCTATGCGAGCTG
TTGTAGAGCACCATGGCCATGACAACAATGACACATTGCCCCCCTTGAAA
GTAGCCATTTGCAAGGGCAAGGAGGACATCTGTGTGAAAATTTCTGACCA
GGGAGGC

BS06809.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8808-PA 1242 Pdk-RA 1..891 17..907 4455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:27:07
Subject Length Description Subject Range Query Range Score Percent Strand
Pdk-RC 2732 CG8808-RC 810..1702 15..907 4465 100 Plus
Pdk-RD 2440 CG8808-RD 810..1702 15..907 4465 100 Plus
Pdk-RB 2293 CG8808-RB 810..1702 15..907 4465 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:27:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9432490..9432857 540..907 1840 100 Plus
2R 25286936 2R 9431970..9432180 140..350 1055 100 Plus
2R 25286936 2R 9432235..9432425 349..539 955 100 Plus
2R 25286936 2R 9427248..9427375 15..142 640 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:27:06 has no hits.

BS06809.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:40 Download gff for BS06809.5prime
Subject Subject Range Query Range Percent Splice Strand
Pdk-PA 1..891 17..907 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:46 Download gff for BS06809.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8808-PA 1..891 17..907 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:15:19 Download gff for BS06809.5prime
Subject Subject Range Query Range Percent Splice Strand
Pdk-RB 798..1702 2..907 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:32:29 Download gff for BS06809.5prime
Subject Subject Range Query Range Percent Splice Strand
Pdk-RB 798..1702 2..907 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:32:29 Download gff for BS06809.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9427236..9427373 2..140 96 -> Plus
2R 9431971..9432178 141..348 100 -> Plus
2R 9432235..9432425 349..539 100 -> Plus
2R 9432490..9432857 540..907 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:15:19 Download gff for BS06809.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5314741..5314878 2..140 96 -> Plus
arm_2R 5319476..5319683 141..348 100 -> Plus
arm_2R 5319740..5319930 349..539 100 -> Plus
arm_2R 5319995..5320362 540..907 100   Plus

BS06809.complete Sequence

1274 bp (1274 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635626

> BS06809.complete
GAAGTTATCAGTCGACATGCGCCTGTTTCCAGTCCGATTCTCAGCCGCCT
CCTCGTCGATGGCGAGTTTGGCCAAAATGCTCGACTTTTACTCGGGCTTC
AACCCCTCGCCCCTCTCGATAAAGCAGTTCATGGACTTTGGTCAGAATGC
CTGCGAGAAGAAATCGTACATATTCCTGCGCAAGGAACTGCCTGTTCGAC
TGGCGAATATCATGAAGGAGATCGCCCTTCTGCCGGATAACCTGTTGCAC
ACCAGATCCGTAAGCGAAGTTAGTTCCTGGTATGTCAAGAGTTTCGAGGA
TGTGCTGGTGTACGAGAAAGCAGAGCCCACCCACGACAATCTGCAAAAGT
TTGTGGCCGATTTGGATCTCATTAGGAATCGGCACAACGATGTGGTGCAA
ACGATGGCCCAGGGTGTGATCGAAATGAAGGAGAACGAGGGCGGCCAGGT
GGATGCGCCTACAGAGAGTTCCATTCAGTACTTTCTCGACAGGCTCTACA
TGTCTCGCATCAGCATTCGAATGCTGATAAATCAGCACACCCTTCTCTTT
GGCGGAAATCCACATGCGGGTGGCCGCCATATTGGTTGCCTGGATCCCGC
CTGTGATCTGTCGGATGTGGTTCGCGATGCTTACGAGAATGCGCGATTCC
TATGCGATCAGTACTACCTGACCAGTCCGGCATTGGAGATCCAGCAGCAC
AGCAGCGAGCCTGGAGACAACCTGCCCATCCGCACCGTTTACGTGCCCTC
GCACCTGTACTACATGCTTTTCGAGCTCTTCAAGAACTCTATGCGAGCTG
TTGTAGAGCACCATGGCCATGACAACAATGACACATTGCCCCCCTTGAAA
GTAGCCATTTGCAAGGGCAAGGAGGACATCTGTGTGAAAATTTCTGACCA
GGGAGGCGGCATTCCCCGCTCCCAGACCGATCAGCTCTTCAAGTATATGT
ACAGCACAGCGCCGCAGCCCTCGAAGTCGGATCTGCATACGGTGCCATTA
GCGGGCTATGGATACGGTCTGCCGATCTCAAGGCTTTACGCCCGCTATTT
CCATGGCGACATTGTGCTGCTCTCCTGCGAAGGATTCGGAACAGATGCAA
TCATCTATCTAAAGGCTCTGTCCGACGAAGCAAACGAATTGCTGCCGATC
TTCAACAAGACAAGCTCAAAGTTCTATCGCGCCACCGTGCCCACGGGTGA
CTGGTCCAATCAGGTAAAATACGCTAAAAAGAAGAAGACGAGCGCTGTCA
ACCAGTAGAAGCTTTCTAGACCAT

BS06809.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:17:20
Subject Length Description Subject Range Query Range Score Percent Strand
Pdk-RC 1242 CG8808-PC 1..1242 17..1258 6210 100 Plus
Pdk-RA 1242 CG8808-PA 1..1242 17..1258 6210 100 Plus
Pdk-RD 1248 CG8808-PD 1..1197 17..1213 5985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:17:22
Subject Length Description Subject Range Query Range Score Percent Strand
Pdk-RC 2732 CG8808-RC 810..2054 15..1259 6225 100 Plus
Pdk-RA 2080 CG8808-RA 810..2054 15..1259 6225 100 Plus
Pdk-RD 2440 CG8808-RD 810..2008 15..1213 5995 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:17:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9432490..9433065 540..1115 2880 100 Plus
2R 25286936 2R 9431970..9432180 140..350 1055 100 Plus
2R 25286936 2R 9432235..9432425 349..539 955 100 Plus
2R 25286936 2R 9433128..9433274 1113..1259 735 100 Plus
2R 25286936 2R 9427248..9427375 15..142 640 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:17:19 has no hits.

BS06809.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:16 Download gff for BS06809.complete
Subject Subject Range Query Range Percent Splice Strand
Pdk-RA 1..1242 17..1258 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:58 Download gff for BS06809.complete
Subject Subject Range Query Range Percent Splice Strand
Pdk-RA 795..2051 2..1259 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:21:42 Download gff for BS06809.complete
Subject Subject Range Query Range Percent Splice Strand
Pdk-RA 812..2053 17..1258 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:17 Download gff for BS06809.complete
Subject Subject Range Query Range Percent Splice Strand
Pdk-RA 795..2051 2..1259 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:18 Download gff for BS06809.complete
Subject Subject Range Query Range Percent Splice Strand
Pdk-RA 812..2053 17..1258 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:18 Download gff for BS06809.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9427250..9427373 17..140 100 -> Plus
2R 9431971..9432178 141..348 100 -> Plus
2R 9432235..9432425 349..539 100 -> Plus
2R 9432490..9433064 540..1114 100 -> Plus
2R 9433130..9433273 1115..1258 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:21:42 Download gff for BS06809.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5320635..5320778 1115..1258 100   Plus
arm_2R 5314755..5314878 17..140 100 -> Plus
arm_2R 5319476..5319683 141..348 100 -> Plus
arm_2R 5319740..5319930 349..539 100 -> Plus
arm_2R 5319995..5320569 540..1114 100 -> Plus

BS06809.pep Sequence

Translation from 16 to 1257

> BS06809.pep
MRLFPVRFSAASSSMASLAKMLDFYSGFNPSPLSIKQFMDFGQNACEKKS
YIFLRKELPVRLANIMKEIALLPDNLLHTRSVSEVSSWYVKSFEDVLVYE
KAEPTHDNLQKFVADLDLIRNRHNDVVQTMAQGVIEMKENEGGQVDAPTE
SSIQYFLDRLYMSRISIRMLINQHTLLFGGNPHAGGRHIGCLDPACDLSD
VVRDAYENARFLCDQYYLTSPALEIQQHSSEPGDNLPIRTVYVPSHLYYM
LFELFKNSMRAVVEHHGHDNNDTLPPLKVAICKGKEDICVKISDQGGGIP
RSQTDQLFKYMYSTAPQPSKSDLHTVPLAGYGYGLPISRLYARYFHGDIV
LLSCEGFGTDAIIYLKALSDEANELLPIFNKTSSKFYRATVPTGDWSNQV
KYAKKKKTSAVNQ*

BS06809.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
Pdk-PC 413 CG8808-PC 1..413 1..413 2165 100 Plus
Pdk-PA 413 CG8808-PA 1..413 1..413 2165 100 Plus
Pdk-PB 422 CG8808-PB 1..410 1..410 2100 97.8 Plus
Pdk-PD 415 CG8808-PD 1..399 1..399 2097 100 Plus