Clone Sequence Records
BS06809.3prime Sequence
919 bp (890 high quality bases) assembled on 2005-12-04
> BS06809.3prime
ATGGTCTAGAAAGCTTCTACTGGTTGACAGCGCTCGTCTTCTTCTTTTTA
GCGTATTTTACCTGATTGGACCAGTCACCCGTGGGCACGGTGGCGCGATA
GAACTTTGAGCTTGTCTTGTTGAAGATCGGCAGCAATTCGTTTGCTTCGT
CGGACAGAGCCTTTAGATAGATGATTGCATCTGTTCCGAATCCTTCGCAG
GAGAGCAGCACAATGTCGCCATGGAAATAGCGGGCGTAAAGCCTTGAGAT
CGGCAGACCGTATCCATAGCCCGCTAATGGCACCGTATGCAGATCCGACT
TCGAGGGCTGCGGCGCTGTGCTGTACATATACTTGAAGAGCTGATCGGTC
TGGGAGCGGGGAATGCCGCCTCCCTGGTCAGAAATTTTCACACAGATGTC
CTCCTTGCCCTTGCAAATGGCTACTTTCAAGGGGGGCAATGTGTCATTGT
TGTCATGGCCATGGTGCTCTACAACAGCTCGCATAGAGTTCTTGAAGAGC
TCGAAAAGCATGTAGTACAGGTGCGAGGGCACGTAAACGGTGCGGATGGG
CAGGTTGTCTCCAGGCTCGCTGCTGTGCTGCTGGATCTCCAATGCCGGAC
TGGTCAGGTAGTACTGATCGCATAGGAATCGCGCATTCTCGTAAGCATCG
CGAACCACATCCGACAGATCACAGGCGGGATCCAGGCAACCAATATGGCG
GCCACCCGCATGTGGATTTCCGCCAAAGAGAAGGGTGTGCTGATTTATCA
GCATTCGAATGCTGATGCGAGACATGTAGAGCCTGTCGAGAAAGTACTGA
ATGGAACTCTCTGTAGGCGCATCCACCTGGCCGCCCTCGTTCTCCTTCAT
TTCGATCACACCCTGNGCCATCGTTTGCACCACATCGTTGTGCCGATTCC
TAATGAGATCCAAATCGGC
BS06809.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8808-PA | 1242 | Pdk-RA | 340..1242 | 919..17 | 4496 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:42:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdk-RC | 2732 | CG8808-RC | 1151..2054 | 919..16 | 4509 | 99.9 | Minus |
Pdk-RA | 2080 | CG8808-RA | 1151..2054 | 919..16 | 4509 | 99.9 | Minus |
Pdk-RD | 2440 | CG8808-RD | 1151..2008 | 919..62 | 4279 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:42:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9432490..9433065 | 735..160 | 2880 | 100 | Minus |
2R | 25286936 | 2R | 9432242..9432425 | 919..736 | 909 | 99.5 | Minus |
2R | 25286936 | 2R | 9433128..9433274 | 162..16 | 735 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 20:42:49 has no hits.
BS06809.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:39 Download gff for
BS06809.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdk-PA | 340..1242 | 17..919 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:44 Download gff for
BS06809.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8808-PA | 340..1242 | 17..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:05:26 Download gff for
BS06809.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdk-RA | 1151..2054 | 16..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:17:45 Download gff for
BS06809.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdk-RA | 1151..2054 | 16..919 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:17:45 Download gff for
BS06809.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9432242..9432425 | 736..919 | 99 | -> | Minus |
2R | 9432490..9433064 | 161..735 | 100 | -> | Minus |
2R | 9433130..9433274 | 16..160 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:05:26 Download gff for
BS06809.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5319747..5319930 | 736..919 | 99 | -> | Minus |
arm_2R | 5319995..5320569 | 161..735 | 100 | -> | Minus |
arm_2R | 5320635..5320779 | 16..160 | 100 | | Minus |
BS06809.5prime Sequence
907 bp (851 high quality bases) assembled on 2005-12-04
> BS06809.5prime
GAAGTTATCAGTCGACATGCGCCTGTTTCCAGTCCGATTCTCAGCCGCCT
CCTCGTCGATGGCGAGTTTGGCCAAAATGCTCGACTTTTACTCGGGCTTC
AACCCCTCGCCCCTCTCGATAAAGCAGTTCATGGACTTTGGTCAGAATGC
CTGCGAGAAGAAATCGTACATATTCCTGCGCAAGGAACTGCCTGTTCGAC
TGGCGAATATCATGAAGGAGATCGCCCTTCTGCCGGATAACCTGTTGCAC
ACCAGATCCGTAAGCGAAGTTAGTTCCTGGTATGTCAAGAGTTTCGAGGA
TGTGCTGGTGTACGAGAAAGCAGAGCCCACCCACGACAATCTGCAAAAGT
TTGTGGCCGATTTGGATCTCATTAGGAATCGGCACAACGATGTGGTGCAA
ACGATGGCCCAGGGTGTGATCGAAATGAAGGAGAACGAGGGCGGCCAGGT
GGATGCGCCTACAGAGAGTTCCATTCAGTACTTTCTCGACAGGCTCTACA
TGTCTCGCATCAGCATTCGAATGCTGATAAATCAGCACACCCTTCTCTTT
GGCGGAAATCCACATGCGGGTGGCCGCCATATTGGTTGCCTGGATCCCGC
CTGTGATCTGTCGGATGTGGTTCGCGATGCTTACGAGAATGCGCGATTCC
TATGCGATCAGTACTACCTGACCAGTCCGGCATTGGAGATCCAGCAGCAC
AGCAGCGAGCCTGGAGACAACCTGCCCATCCGCACCGTTTACGTGCCCTC
GCACCTGTACTACATGCTTTTCGAGCTCTTCAAGAACTCTATGCGAGCTG
TTGTAGAGCACCATGGCCATGACAACAATGACACATTGCCCCCCTTGAAA
GTAGCCATTTGCAAGGGCAAGGAGGACATCTGTGTGAAAATTTCTGACCA
GGGAGGC
BS06809.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8808-PA | 1242 | Pdk-RA | 1..891 | 17..907 | 4455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:27:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdk-RC | 2732 | CG8808-RC | 810..1702 | 15..907 | 4465 | 100 | Plus |
Pdk-RD | 2440 | CG8808-RD | 810..1702 | 15..907 | 4465 | 100 | Plus |
Pdk-RB | 2293 | CG8808-RB | 810..1702 | 15..907 | 4465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:27:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9432490..9432857 | 540..907 | 1840 | 100 | Plus |
2R | 25286936 | 2R | 9431970..9432180 | 140..350 | 1055 | 100 | Plus |
2R | 25286936 | 2R | 9432235..9432425 | 349..539 | 955 | 100 | Plus |
2R | 25286936 | 2R | 9427248..9427375 | 15..142 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:27:06 has no hits.
BS06809.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:40 Download gff for
BS06809.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdk-PA | 1..891 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:46 Download gff for
BS06809.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8808-PA | 1..891 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:15:19 Download gff for
BS06809.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdk-RB | 798..1702 | 2..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:32:29 Download gff for
BS06809.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdk-RB | 798..1702 | 2..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:32:29 Download gff for
BS06809.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9427236..9427373 | 2..140 | 96 | -> | Plus |
2R | 9431971..9432178 | 141..348 | 100 | -> | Plus |
2R | 9432235..9432425 | 349..539 | 100 | -> | Plus |
2R | 9432490..9432857 | 540..907 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:15:19 Download gff for
BS06809.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5314741..5314878 | 2..140 | 96 | -> | Plus |
arm_2R | 5319476..5319683 | 141..348 | 100 | -> | Plus |
arm_2R | 5319740..5319930 | 349..539 | 100 | -> | Plus |
arm_2R | 5319995..5320362 | 540..907 | 100 | | Plus |
BS06809.complete Sequence
1274 bp (1274 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635626
> BS06809.complete
GAAGTTATCAGTCGACATGCGCCTGTTTCCAGTCCGATTCTCAGCCGCCT
CCTCGTCGATGGCGAGTTTGGCCAAAATGCTCGACTTTTACTCGGGCTTC
AACCCCTCGCCCCTCTCGATAAAGCAGTTCATGGACTTTGGTCAGAATGC
CTGCGAGAAGAAATCGTACATATTCCTGCGCAAGGAACTGCCTGTTCGAC
TGGCGAATATCATGAAGGAGATCGCCCTTCTGCCGGATAACCTGTTGCAC
ACCAGATCCGTAAGCGAAGTTAGTTCCTGGTATGTCAAGAGTTTCGAGGA
TGTGCTGGTGTACGAGAAAGCAGAGCCCACCCACGACAATCTGCAAAAGT
TTGTGGCCGATTTGGATCTCATTAGGAATCGGCACAACGATGTGGTGCAA
ACGATGGCCCAGGGTGTGATCGAAATGAAGGAGAACGAGGGCGGCCAGGT
GGATGCGCCTACAGAGAGTTCCATTCAGTACTTTCTCGACAGGCTCTACA
TGTCTCGCATCAGCATTCGAATGCTGATAAATCAGCACACCCTTCTCTTT
GGCGGAAATCCACATGCGGGTGGCCGCCATATTGGTTGCCTGGATCCCGC
CTGTGATCTGTCGGATGTGGTTCGCGATGCTTACGAGAATGCGCGATTCC
TATGCGATCAGTACTACCTGACCAGTCCGGCATTGGAGATCCAGCAGCAC
AGCAGCGAGCCTGGAGACAACCTGCCCATCCGCACCGTTTACGTGCCCTC
GCACCTGTACTACATGCTTTTCGAGCTCTTCAAGAACTCTATGCGAGCTG
TTGTAGAGCACCATGGCCATGACAACAATGACACATTGCCCCCCTTGAAA
GTAGCCATTTGCAAGGGCAAGGAGGACATCTGTGTGAAAATTTCTGACCA
GGGAGGCGGCATTCCCCGCTCCCAGACCGATCAGCTCTTCAAGTATATGT
ACAGCACAGCGCCGCAGCCCTCGAAGTCGGATCTGCATACGGTGCCATTA
GCGGGCTATGGATACGGTCTGCCGATCTCAAGGCTTTACGCCCGCTATTT
CCATGGCGACATTGTGCTGCTCTCCTGCGAAGGATTCGGAACAGATGCAA
TCATCTATCTAAAGGCTCTGTCCGACGAAGCAAACGAATTGCTGCCGATC
TTCAACAAGACAAGCTCAAAGTTCTATCGCGCCACCGTGCCCACGGGTGA
CTGGTCCAATCAGGTAAAATACGCTAAAAAGAAGAAGACGAGCGCTGTCA
ACCAGTAGAAGCTTTCTAGACCAT
BS06809.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:17:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdk-RC | 1242 | CG8808-PC | 1..1242 | 17..1258 | 6210 | 100 | Plus |
Pdk-RA | 1242 | CG8808-PA | 1..1242 | 17..1258 | 6210 | 100 | Plus |
Pdk-RD | 1248 | CG8808-PD | 1..1197 | 17..1213 | 5985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:17:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdk-RC | 2732 | CG8808-RC | 810..2054 | 15..1259 | 6225 | 100 | Plus |
Pdk-RA | 2080 | CG8808-RA | 810..2054 | 15..1259 | 6225 | 100 | Plus |
Pdk-RD | 2440 | CG8808-RD | 810..2008 | 15..1213 | 5995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:17:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9432490..9433065 | 540..1115 | 2880 | 100 | Plus |
2R | 25286936 | 2R | 9431970..9432180 | 140..350 | 1055 | 100 | Plus |
2R | 25286936 | 2R | 9432235..9432425 | 349..539 | 955 | 100 | Plus |
2R | 25286936 | 2R | 9433128..9433274 | 1113..1259 | 735 | 100 | Plus |
2R | 25286936 | 2R | 9427248..9427375 | 15..142 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:17:19 has no hits.
BS06809.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:16 Download gff for
BS06809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdk-RA | 1..1242 | 17..1258 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:58 Download gff for
BS06809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdk-RA | 795..2051 | 2..1259 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:21:42 Download gff for
BS06809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdk-RA | 812..2053 | 17..1258 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:17 Download gff for
BS06809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdk-RA | 795..2051 | 2..1259 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:18 Download gff for
BS06809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdk-RA | 812..2053 | 17..1258 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:18 Download gff for
BS06809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9427250..9427373 | 17..140 | 100 | -> | Plus |
2R | 9431971..9432178 | 141..348 | 100 | -> | Plus |
2R | 9432235..9432425 | 349..539 | 100 | -> | Plus |
2R | 9432490..9433064 | 540..1114 | 100 | -> | Plus |
2R | 9433130..9433273 | 1115..1258 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:21:42 Download gff for
BS06809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5320635..5320778 | 1115..1258 | 100 | | Plus |
arm_2R | 5314755..5314878 | 17..140 | 100 | -> | Plus |
arm_2R | 5319476..5319683 | 141..348 | 100 | -> | Plus |
arm_2R | 5319740..5319930 | 349..539 | 100 | -> | Plus |
arm_2R | 5319995..5320569 | 540..1114 | 100 | -> | Plus |
BS06809.pep Sequence
Translation from 16 to 1257
> BS06809.pep
MRLFPVRFSAASSSMASLAKMLDFYSGFNPSPLSIKQFMDFGQNACEKKS
YIFLRKELPVRLANIMKEIALLPDNLLHTRSVSEVSSWYVKSFEDVLVYE
KAEPTHDNLQKFVADLDLIRNRHNDVVQTMAQGVIEMKENEGGQVDAPTE
SSIQYFLDRLYMSRISIRMLINQHTLLFGGNPHAGGRHIGCLDPACDLSD
VVRDAYENARFLCDQYYLTSPALEIQQHSSEPGDNLPIRTVYVPSHLYYM
LFELFKNSMRAVVEHHGHDNNDTLPPLKVAICKGKEDICVKISDQGGGIP
RSQTDQLFKYMYSTAPQPSKSDLHTVPLAGYGYGLPISRLYARYFHGDIV
LLSCEGFGTDAIIYLKALSDEANELLPIFNKTSSKFYRATVPTGDWSNQV
KYAKKKKTSAVNQ*
BS06809.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdk-PC | 413 | CG8808-PC | 1..413 | 1..413 | 2165 | 100 | Plus |
Pdk-PA | 413 | CG8808-PA | 1..413 | 1..413 | 2165 | 100 | Plus |
Pdk-PB | 422 | CG8808-PB | 1..410 | 1..410 | 2100 | 97.8 | Plus |
Pdk-PD | 415 | CG8808-PD | 1..399 | 1..399 | 2097 | 100 | Plus |