Clone Sequence Records
BS06810.3prime Sequence
925 bp (822 high quality bases) assembled on 2005-12-04
> BS06810.3prime
ATGGTCTAGAAAGCTTTTATTTACGCCCCTTCCCCTTGCGACCCTTCGAA
CCCTTTTCGCGCCTCTTCTTTGCATCCATTGACCGCTTGTCCTTCTTCTC
GCGCGGATCGACGACCTTATAGCGACCCTTGACGCCAGCTGGACGACGTG
CGCGTCGAGCTGCTGTCTGCTTCTTGGCCACCACATATGTGACCTCCTTC
TTCTTCTCCTGAGCCTTCTTGTACACCTTCTTCAGTTGCTTGGACTTCTC
GTGGTTGGTGGCATCGCTGTTCTCCATAATCTTTTCGGCCATCTTCTTAG
CCTTGGCCAAGCGTTTCGTGGCACGACGATGCTTGCGCGCCTTGGCCTCC
ATGACCTTCTTGATCGGACGCACGTTCACCTCCTGCAACTTGCGCTGGTA
CTCGGCGGTCAGCTCCTTCGGCACCGGTGTTGGCTTGGTCATATGCTCGT
CCTCATCGAGCTTGAACCAAACGGGAACGTTCTCATCGTTGAAAGCGTAG
CGATTCCAGGCTGCGTCGATCAAGTCACGGCGTGTCTTCTTGCTGCGTGT
CAGCAGTGCGCCCAAAGCCATTTCGTTTTCGGACAGGCGAACCTTCTTGG
CATTTGTACCTGCAGCTGGCTGTTCGCCGTCGCTATCCTCGTTAGCGTCA
TCCTCGGATTCGGATGACTCTGAGCTGCTGTCTTTAGTTGCGGTCTCATG
GCGTGCACGACGTTTGGCCTTCTTACCCTGGACAACCTCCTCGTTGGCGT
CCGGCGTTAGGGTGCTCTCACCCAGAACGGCGACACCCTTGGCCTTGAAT
TCCTTGGCCAGATTGTTCAGATCGTAGGTTTCCTCGTCGTCATCCGACTG
GATATTCTGTAGTACATCCTTCTCGTACCACAGCTGTACGCGTTGCTCTC
GCTTGGTGTTTTTGTCACGGAAATC
BS06810.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8939-PA | 2454 | CG8939-RA | 1546..2454 | 925..17 | 4545 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:46:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8939-RA | 2622 | CG8939-RA | 1654..2563 | 925..16 | 4550 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:46:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15999043..15999639 | 612..16 | 2985 | 100 | Minus |
| X | 23542271 | X | 15998669..15998986 | 925..608 | 1590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:46:07 has no hits.
BS06810.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:40 Download gff for
BS06810.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8939-PA | 1546..2454 | 17..925 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:48 Download gff for
BS06810.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8939-PA | 1546..2454 | 17..925 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:41:39 Download gff for
BS06810.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8939-RA | 1654..2563 | 16..925 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:55 Download gff for
BS06810.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8939-RA | 1654..2563 | 16..925 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:55 Download gff for
BS06810.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15998669..15998984 | 610..925 | 100 | -> | Minus |
| X | 15999046..15999639 | 16..609 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:41:39 Download gff for
BS06810.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15892702..15893017 | 610..925 | 100 | -> | Minus |
| arm_X | 15893079..15893672 | 16..609 | 100 | | Minus |
BS06810.5prime Sequence
889 bp (720 high quality bases) assembled on 2005-12-04
> BS06810.5prime
GAAGTTATCAGTCGACATGGGCAAGAAGACGAAAGTTGGAAAGACGCGCA
AGGATAAGTTCTACCAGTTGGCCAAGGAGACGGGCCTGCGATCGCGTGCC
GCCTTCAAATTGATCCAGCTGAATCGCAAATTCGGTTTCCTCCAACAATC
GCAAGTATGTTTGGATTTGTGCGCAGCTCCCGGTGGCTGGATGCAGGTGG
CCAAGCAGAATATGCCGGTGTCCAGCATTGTGATCGGCGTGGATCTCTTT
CCCATCCGTCCCATTGCCGGCTGCATTGGTCTCGTCGAGGACATCACCAC
CGAGAAGTGCCGCCAATCGCTGACCAAGGAGCTGCAATCGTGGAAGGCCG
ATGTTGTGCTCCACGACGGTGCTCCCAATGTGGGTAGGAACTGGCTGTAC
GATGCCTATCAGCAGATCTGTCTCACCCTCAACGCGCTCAAGTTGAGCAC
ACAGTTTCTGCGCAACGGCGGCTGGTTTGTGACGAAGGTTTTCCGCTCCA
AGGATTACAATGCCCTGCTCTGGGTGCTCAAGCAGCTGTTCAAGAAGGTG
CACGCCACCAAGCCGAGTGCGTCGCGTAAGGAATCCGCCGAGATATTCGT
CGTCTGTCAGGGCTACCTGGCGCCCGATCACATTGATCCCCGTCTCCTGG
ACTCGAAGTATGTGTTCGAGGAGCTGGATCTCGATGCCAAAAAGAAGAGC
AGCCTGCTGCATCCCGAAAAGCAAAAGCGCATCAAGGCCGAGGGCTATAC
GGCCCAGGATATTGCGCTGCGCAACGATCTGGCTGCCACAGAGTTCCTGA
AAGCTGAAAATGCACTGGCTGCGCTGCAGGGCATCGGTTCGATTCGCATC
GATGATCAGCGCATTGCCAATCACAAAAAGACCACGCCA
BS06810.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8939-PA | 2454 | CG8939-RA | 1..873 | 17..889 | 4315 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:35:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8939-RA | 2622 | CG8939-RA | 109..981 | 17..889 | 4335 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:35:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15997124..15997996 | 17..889 | 4335 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:35:08 has no hits.
BS06810.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:41 Download gff for
BS06810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8939-PA | 1..872 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:49 Download gff for
BS06810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8939-PA | 1..872 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:30:38 Download gff for
BS06810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8939-RA | 104..980 | 9..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:21:44 Download gff for
BS06810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8939-RA | 104..980 | 9..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:21:44 Download gff for
BS06810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15997119..15997995 | 9..888 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:30:38 Download gff for
BS06810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15891152..15892028 | 9..888 | 99 | | Plus |
BS06810.complete Sequence
2486 bp assembled on 2009-12-07
GenBank Submission: KX805081
> BS06810.complete
GAAGTTATCAGTCGACATGGGCAAGAAGACGAAAGTTGGAAAGACGCGCA
AGGATAAGTTCTACCAGTTGGCCAAGGAGACGGGCCTGCGATCGCGTGCC
GCCTTCAAATTGATCCAGCTGAATCGCAAATTCGGTTTCCTCCAACAATC
GCAAGTATGTTTGGATTTGTGCGCAGCTCCCGGTGGCTGGATGCAGGTGG
CCAAGCAGAATATGCCGGTGTCCAGCATTGTGATCGGCGTGGATCTCTTT
CCCATCCGTCCCATTGCCGGCTGCATTGGTCTCGTCGAGGACATCACCAC
CGAGAAGTGCCGCCAATCGCTGACCAAGGAGCTGCAATCGTGGAAGGCCG
ATGTTGTGCTCCACGACGGTGCTCCCAATGTGGGTAGGAACTGGCTGTAC
GATGCCTATCAGCAGATCTGTCTCACCCTCAACGCGCTCAAGTTGAGCAC
ACAGTTTCTGCGCAACGGCGGCTGGTTTGTGACGAAGGTTTTCCGCTCCA
AGGATTACAATGCCCTGCTCTGGGTGCTCAAGCAGCTGTTCAAGAAGGTG
CACGCCACCAAGCCGAGTGCGTCGCGTAAGGAATCCGCCGAGATATTCGT
CGTCTGTCAGGGCTACCTGGCGCCCGATCACATTGATCCCCGTCTCCTGG
ACTCGAAGTATGTGTTCGAGGAGCTGGATCTCGATGCCAAAAAGAAGAGC
AGCCTGCTGCATCCCGAAAAGCAAAAGCGCATCAAGGCCGAGGGCTATAC
GGCCCAGGATATTGCGCTGCGCAACGATCTGGCTGCCACAGAGTTCCTGA
AGGCTGAAAATGCACTGGCTGCGCTGCAGGGCATCGGTTCGATTCGCATC
GATGATCAGCGCATTGCCAATCACAAGAAGACCACGCCAGAGATTCTCGA
GTGCTGCAAGGATCTGAAGGTATTGGGCCGCAAGGATATCAAGGGTCTCG
TGCAATGGTGGAAGGATGTTAGGGAGTTGTTCGTTGAAAAGGAAACCCCA
CTGGTCGTCGGCAATGCCGCAGATGAGAAGCCCAAGCCATTGACGCAAGC
GGAAATCGAGGACATGGAAGATGCCGAGCTGCAAACGCAAATTGAGACAA
TTGTCGAAGAGGAGAAGAAGGACTTGAAGCGTAAGCGTAAGAAGACGCTC
AAGACCAAGGCGAAATTGCACGAGAAGATGAACCTTAATATGGTGATCAA
GGGAGACGATGGTCCGGTCGAGGAAATGGAGCACGAAATCTTTGACCTCA
AGAATATTCGCACCTCTGCCGAGCTTGACGAGCTGCTAGACGTGCAACCC
GATTTTGCTGTCGATGAATCGCAGCCCGAGGAAACAAAGCTGCCAAAATA
CAAGTATTTCGACAAGGATGAGGGCAACATCAACGATGATCTAAACTATG
ACGATGACAATGATGAGGAGCAAAGCGAGGCCTCCGACGACGAGGATCAA
ATCAATGATAAGCAGGGCCTGGGCCTCAGTGACGACGACAATGATGAGGG
CAATGCAAAGGGCAAAAACAAGAGAAAGAAACGCTCCGAGAATCCGCTGA
TTAAATCCAATGATTTCCGTGACAAAAACACCAAGCGAGAGCAACGCGTA
CAGCTGTGGTACGAGAAGGATGTACTACAGAATATCCAGTCGGATGACGA
CGAGGAAACCTACGATCTGAACAATCTGGCCAAGGAATTCAAGGCCAAGG
GTGTCGCCGTTCTGGGTGAGAGCACCCTAACGCCGGACGCCAACGAGGAG
GTTGTCCAGGGTAAGAAGGCCAAACGTCGTGCACGCCATGAGACCGCAAC
TAAAGACAGCAGCTCAGAGTCATCCGAATCCGAGGATGACGCTAACGAGG
ATAGCGACGGCGAACAGCCAGCTGCAGGTACAAATGCCAAGAAGGTTCGC
CTGTCCGAAAACGAAATGGCTTTGGGCGCACTGCTGACACGCAGCAAGAA
GACACGCCGTGACTTGATCGACGCAGCCTGGAATCGCTACGCTTTCAACG
ATGAGAACGTTCCCGTTTGGTTCAAGCTCGATGAGGACGAGCATATGACC
AAGCCAACACCGGTGCCGAAGGAGCTGACCGCCGAGTACCAGCGCAAGTT
GCAGGAGGTGAACGTGCGTCCGATCAAGAAGGTCATGGAGGCCAAGGCGC
GCAAGCATCGTCGTGCCACGAAACGCTTGGCCAAGGCTAAGAAGATGGCC
GAAAAGATTATGGAGAACAGCGATGCCACCAACCACGAGAAGTCCAAGCA
ACTGAAGAAGGTGTACAAGAAGGCTCAGGAGAAGAAGAAGGAGGTCACAT
ATGTGGTGGCCAAGAAGCAGACAGCAGCTCGACGCGCACGTCGTCCAGCT
GGCGTCAAGGGTCGCTATAAGGTCGTCGATCCGCGCGAGAAGAAGGACAA
GCGGTCAATGGATGCAAAGAAGAGGCGCGAAAAGGGTTCGAAGGGTCGCA
AGGGGAAGGGGCGTAAATAAAAGCTTTCTAGACCAT
BS06810.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:16:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8939-RA | 2454 | CG8939-PA | 1..2454 | 17..2470 | 12270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:16:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8939-RA | 2622 | CG8939-RA | 109..2563 | 17..2471 | 12275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:16:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15997124..15998986 | 17..1879 | 9315 | 100 | Plus |
| X | 23542271 | X | 15999043..15999639 | 1875..2471 | 2985 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:16:30 has no hits.
BS06810.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 10:00:59 Download gff for
BS06810.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8939-RA | 88..2539 | 17..2468 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:20 Download gff for
BS06810.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8939-RA | 109..2560 | 17..2468 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:12:14 Download gff for
BS06810.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8939-RA | 88..2539 | 17..2468 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:38 Download gff for
BS06810.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8939-RA | 109..2560 | 17..2468 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:38 Download gff for
BS06810.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15997124..15998984 | 17..1877 | 100 | -> | Plus |
| X | 15999046..15999636 | 1878..2468 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:20 Download gff for
BS06810.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15891157..15893017 | 17..1877 | 100 | -> | Plus |
| arm_X | 15893079..15893669 | 1878..2468 | 100 | | Plus |
BS06810.pep Sequence
Translation from 16 to 2469
> BS06810.pep
MGKKTKVGKTRKDKFYQLAKETGLRSRAAFKLIQLNRKFGFLQQSQVCLD
LCAAPGGWMQVAKQNMPVSSIVIGVDLFPIRPIAGCIGLVEDITTEKCRQ
SLTKELQSWKADVVLHDGAPNVGRNWLYDAYQQICLTLNALKLSTQFLRN
GGWFVTKVFRSKDYNALLWVLKQLFKKVHATKPSASRKESAEIFVVCQGY
LAPDHIDPRLLDSKYVFEELDLDAKKKSSLLHPEKQKRIKAEGYTAQDIA
LRNDLAATEFLKAENALAALQGIGSIRIDDQRIANHKKTTPEILECCKDL
KVLGRKDIKGLVQWWKDVRELFVEKETPLVVGNAADEKPKPLTQAEIEDM
EDAELQTQIETIVEEEKKDLKRKRKKTLKTKAKLHEKMNLNMVIKGDDGP
VEEMEHEIFDLKNIRTSAELDELLDVQPDFAVDESQPEETKLPKYKYFDK
DEGNINDDLNYDDDNDEEQSEASDDEDQINDKQGLGLSDDDNDEGNAKGK
NKRKKRSENPLIKSNDFRDKNTKREQRVQLWYEKDVLQNIQSDDDEETYD
LNNLAKEFKAKGVAVLGESTLTPDANEEVVQGKKAKRRARHETATKDSSS
ESSESEDDANEDSDGEQPAAGTNAKKVRLSENEMALGALLTRSKKTRRDL
IDAAWNRYAFNDENVPVWFKLDEDEHMTKPTPVPKELTAEYQRKLQEVNV
RPIKKVMEAKARKHRRATKRLAKAKKMAEKIMENSDATNHEKSKQLKKVY
KKAQEKKKEVTYVVAKKQTAARRARRPAGVKGRYKVVDPREKKDKRSMDA
KKRREKGSKGRKGKGRK*
BS06810.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:06:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8939-PA | 817 | CG8939-PA | 1..817 | 1..817 | 4210 | 100 | Plus |
| CG7009-PA | 320 | CG7009-PA | 1..234 | 7..229 | 346 | 38.5 | Plus |
| CG5220-PA | 302 | CG5220-PA | 1..219 | 7..212 | 315 | 36.1 | Plus |
| CG11447-PA | 250 | CG11447-PA | 48..244 | 13..200 | 200 | 29.9 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 4240..4822 | 213..809 | 180 | 22 | Plus |
