Clone Sequence Records
BS06811.3prime Sequence
915 bp (885 high quality bases) assembled on 2005-12-04
> BS06811.3prime
ATGGTCTAGAAAGCTTTTAAGAGCAAGATCCTTTACTCTTAATCGTCACA
CTTATATTGAGGCATGACGAATAGCACTGCAGTTGGGTTTCGCCCGTGTA
CATGTATCCGTCGGATCCACAGATTATTTCATCGTTTTCATCGTACACAT
TAGCACATATCTTCTCGCAGTAGTTTTCCGTGTCCTTTGGATCGTCAGGA
GTAGCTGAACTCGTCACAGTGGGCACCTTTGGAATATCTTGCTGCTTTCC
ACTTTCAGTGTCGGAACTATCCTCTGGGTCATCGGTGTATTCCTTAATGG
GCTTGCTGAGTTCAATCTTCGGGGCAGGAGATTTCGCGGGCTCGCGGGGA
GCTTGGGCCACGGTTTCGTAGTAGTACTGATTGGCTTGCGGGGCTTGGGT
GTACTTCATCGATCCCCTTATGGCATCTTGCTCGGTGAACTCGAATCGCA
GAGGCTCCGGGGTAAAGCTCTTGTGGGTCTTGGCGAGGTGCTGGCTCTTC
GACGGCGATTGAGTGGTGGTCTGGACCGCCATGGGAGTAGAGACCACATG
CTTAACGGCTTTGTTGCCGTCGGACTTGACAACGAAGACATCCTGACCTG
CCTGGTAACTGCCGCGAACCACTGCGGAATTCGCAGGAGCGGGATCTTGC
TGGTAGAACAAGTCGGACACTTGTATGGGCTCATTGTAACTGGAGGAGAC
TGAGTTGTCTAGGCCAGCAGTTTTGTAGGGAACATGTTGCTGCAGCGCTT
GTTGCTGCTGCGGCTGCTGGTGCTGCGGTTGCTGATGCTGCTGCTGTTGT
TGCTGATACAGTTGCTGCTGCTGCTGCTGTCTGTATTGCTGTGGATATTG
GTGGAGCAGCTTCTGCTGGTCCCGCTCGGCGTCCAGTTTCTTGAAGTCAG
GATCCTTCTTGGGGC
BS06811.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7173-PA | 1695 | CG7173-RA | 799..1695 | 913..17 | 4460 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:40:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7173-RA | 2439 | CG7173-RA | 1265..2162 | 913..16 | 4475 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:40:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21556291..21556962 | 242..913 | 3345 | 99.9 | Plus |
| 3L | 28110227 | 3L | 21555750..21555944 | 50..244 | 975 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 16:40:06 has no hits.
BS06811.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:43 Download gff for
BS06811.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7173-PA | 798..1695 | 17..915 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:51 Download gff for
BS06811.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7173-PA | 798..1695 | 17..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:26:05 Download gff for
BS06811.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7173-RA | 1264..2164 | 12..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:44:00 Download gff for
BS06811.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7173-RA | 1264..2164 | 12..915 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:44:00 Download gff for
BS06811.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21555648..21555685 | 12..51 | 95 | <- | Plus |
| 3L | 21555752..21555941 | 52..241 | 100 | <- | Plus |
| 3L | 21556291..21556963 | 242..915 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:26:05 Download gff for
BS06811.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21548748..21548785 | 12..51 | 95 | <- | Plus |
| arm_3L | 21548852..21549041 | 52..241 | 100 | <- | Plus |
| arm_3L | 21549391..21550063 | 242..915 | 99 | | Plus |
BS06811.5prime Sequence
934 bp (795 high quality bases) assembled on 2005-12-04
> BS06811.5prime
GAAGTTATCAGTCGACATGACTCAGAGTCCGCTTAAGTTGGCCCCCATTT
TGGAGGCCCTAGTTCTGATAGTGGTCCTAATCAACCAAGTGCAGTGCGGT
GAGAATGATATGAGACAAGCGCGCATAAGGCAGTTTCTGAGTGAGAACCA
GCCCCTGGCCCAGCACCATATCAAGCACAATCGGCCGCCGGGTCCCGGAC
AACTGCCCCGGATAAGATCGCGATCGGATAACCTGGCCATGCTTTCTGGT
GGCTCCAACAAGTTCTTGCGGTCGCCGCAACCTGCCACTGCGCAGCACAT
CATGCGTCGCGAGCAGTTCGGGAACTTTCCTGCGAACGACCAGCTCAGGA
GGTACCAGTTCGACCAGAGTCAGCAGGGCAGATTCGCCCACGTAAAGGAC
ACTCCGGTGCTAGATGTGGGCAAAAACCAGTTCCCACTCCAGTATGTCTC
CGAGCAGTACATTCAGAACTTCAAGTCCTCGCCGCGCTTCAATGGCAATG
TGATCATGAAGGACACCAAGCCAGTGTACGCACCCATCCAACAGCATGCG
ATTCCCGTCCAGGCCTCCCAGTACCTGCACTATCCCAAGCTCTTCGGACA
GCAGGGATCTCCCAGTTTCAGTGTTGTCCCTACCCAGCAAACTGCTCTCC
AAAACAGCCAGTTTCCCCAGGATCCAAATAGCTACTCTGTCTACGAGGAT
ACCGATATACCTGCGAAGCAGGCGGTAAACTTTCGCCAGGCAGTGCCACC
ACCAAAGGAGTCCAGGGAGGCGCAGGACTACCTGCAATTCATGAGCACCN
ACGAGTACTTCCTGCCCAAGAGGGATCCTGACTTCAAGAAACTGGACGCC
GAGCGGGACCAGCAGAAGCTGCTCACCAATATCCACAGCAATACAGACAG
CAGCAGCAGCAGCAACTGTATCAGCAACAACAGC
BS06811.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7173-PA | 1695 | CG7173-RA | 1..858 | 17..874 | 4271 | 99.8 | Plus |
| CG7173-PA | 1695 | CG7173-RA | 859..919 | 874..934 | 305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:45:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7173-RA | 2439 | CG7173-RA | 467..1385 | 17..934 | 4559 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:45:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21556842..21557760 | 934..17 | 4534 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:45:43 has no hits.
BS06811.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:44 Download gff for
BS06811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7173-PA | 1..919 | 17..934 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:53 Download gff for
BS06811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7173-PA | 1..919 | 17..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:03:42 Download gff for
BS06811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7173-RA | 467..1385 | 17..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:20:12 Download gff for
BS06811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7173-RA | 467..1385 | 17..934 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:20:12 Download gff for
BS06811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21556842..21557760 | 17..934 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:03:42 Download gff for
BS06811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21549942..21550860 | 17..934 | 99 | | Minus |
BS06811.complete Sequence
1727 bp assembled on 2007-10-26
GenBank Submission: FJ635627
> BS06811.complete
GAAGTTATCAGTCGACATGACTCAGAGTCCGCTTAAGTTGGCCCCCATTT
TGGAGGCCCTAGTTCTGATAGTGGTCCTAATCAACCAAGTGCAGTGCGGT
GAGAATGATATGAGACAAGCGCGCATAAGGCAGTTTCTGAGTGAGAACCA
GCCCCTGGCCCAGCACCATATCAAGCACAATCGGCCGCCGGGTCCCGGAC
AACTGCCCCGGATAAGATCGCGATCGGATAACCTGGCCATGCTTTCTGGT
GGCTCCAACAAGTTCTTGCGGTCGCCGCAACCTGCCACTGCGCAGCACAT
CATGCGTCGCGAGCAGTTCGGGAACTTTCCTGCGAACGACCAGCTCAGGA
GGTACCAGTTCGACCAGAGTCAGCAGGGCAGATTCGCCCACGTAAAGGAC
ACTCCGGTGCTAGATGTGGGCAAAAACCAGTTCCCACTCCAGTATGTCTC
CGAGCAGTACATTCAGAACTTCAAGTCCTCGCCGCGCTTCAATGGCAATG
TGATCATGAAGGACACCAAGCCAGTGTACGCACCCATCCAACAGCATGCG
ATTCCCGTCCAGGCCTCCCAGTACCTGCACTATCCCAAGCTCTTCGGACA
GCAGGGATCTCCCAGTTTCAGTGTTGTCCCTACCCAGCAAACTGCTCTCC
AAAACAGCCAGTTTCCCCAGGATCCAAATAGCTACTCTGTCTACGAGGAT
ACCGATATACCTGCGAAGCAGGCGGTAAACTTTCGCCAGGCAGTGCCACC
ACCAAAGGAGTCCAGGGAGGCGCAGGACTACCTGCAATTCATGAGCACCA
ACGAGTACTTCCTGCCCAAGAGGGATCCTGACTTCAAGAAACTGGACGCC
GAGCGGGACCAGCAGAAGCTGCTCCACCAATATCCACAGCAATACAGACA
GCAGCAGCAGCAGCAACTGTATCAGCAACAACAGCAGCAGCATCAGCAAC
CGCAGCACCAGCAGCCGCAGCAGCAACAAGCGCTGCAGCAACATGTTCCC
TACAAAACTGCTGGCCTAGACAACTCAGTCTCCTCCAGTTACAATGAGCC
CATACAAGTGTCCGACTTGTTCTACCAGCAAGATCCCGCTCCTGCGAATT
CCGCAGTGGTTCGCGGCAGTTACCAGGCAGGTCAGGATGTCTTCGTTGTC
AAGTCCGACGGCAACAAAGCCGTTAAGCATGTGGTCTCTACTCCCATGGC
GGTCCAGACCACCACTCAATCGCCGTCGAAGAGCCAGCACCTCGCCAAGA
CCCACAAGAGCTTTACCCCGGAGCCTCTGCGATTCGAGTTCACCGAGCAA
GATGCCATAAGGGGATCGATGAAGTACACCCAAGCCCCGCAAGCCAATCA
GTACTACTACGAAACCGTGGCCCAAGCTCCCCGCGAGCCCGCGAAATCTC
CTGCCCCGAAGATTGAACTCAGCAAGCCCATTAAGGAATACACCGATGAC
CCAGAGGATAGTTCCGACACTGAAAGTGGAAAGCAGCAAGATATTCCAAA
GGTGCCCACTGTGACGAGTTCAGCTACTCCTGACGATCCAAAGGACACGG
AAAACTACTGCGAGAAGATATGTGCTAATGTGTACGATGAAAACGATGAA
ATAATCTGTGGATCCGACGGATACATGTACACGGGCGAAACCCAACTGCA
GTGCTATTCGTCATGCCTCAATATAAGTGTGACGATTAAGAGTAAAGGAT
CTTGCTCTTAAAAGCTTTCTAGACCAT
BS06811.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:25:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7173-RA | 1695 | CG7173-PA | 1..1695 | 17..1711 | 8475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:25:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7173-RA | 2439 | CG7173-RA | 467..2162 | 17..1712 | 8480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:25:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21556291..21557760 | 1486..17 | 7350 | 100 | Minus |
| 3L | 28110227 | 3L | 21555750..21555944 | 1678..1484 | 975 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:25:41 has no hits.
BS06811.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:06:16 Download gff for
BS06811.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7173-RA | 1..1695 | 17..1711 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:35:29 Download gff for
BS06811.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7173-RA | 462..2159 | 17..1716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:51:57 Download gff for
BS06811.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7173-RA | 467..2159 | 17..1709 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:42:50 Download gff for
BS06811.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7173-RA | 462..2154 | 17..1709 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:16 Download gff for
BS06811.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7173-RA | 467..2159 | 17..1709 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:16 Download gff for
BS06811.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21555653..21555685 | 1677..1709 | 100 | <- | Minus |
| 3L | 21555752..21555941 | 1487..1676 | 100 | <- | Minus |
| 3L | 21556291..21557760 | 17..1486 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:51:57 Download gff for
BS06811.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21548753..21548785 | 1677..1709 | 100 | <- | Minus |
| arm_3L | 21548852..21549041 | 1487..1676 | 100 | <- | Minus |
| arm_3L | 21549391..21550860 | 17..1486 | 100 | | Minus |
BS06811.pep Sequence
Translation from 16 to 1710
> BS06811.pep
MTQSPLKLAPILEALVLIVVLINQVQCGENDMRQARIRQFLSENQPLAQH
HIKHNRPPGPGQLPRIRSRSDNLAMLSGGSNKFLRSPQPATAQHIMRREQ
FGNFPANDQLRRYQFDQSQQGRFAHVKDTPVLDVGKNQFPLQYVSEQYIQ
NFKSSPRFNGNVIMKDTKPVYAPIQQHAIPVQASQYLHYPKLFGQQGSPS
FSVVPTQQTALQNSQFPQDPNSYSVYEDTDIPAKQAVNFRQAVPPPKESR
EAQDYLQFMSTNEYFLPKRDPDFKKLDAERDQQKLLHQYPQQYRQQQQQQ
LYQQQQQQHQQPQHQQPQQQQALQQHVPYKTAGLDNSVSSSYNEPIQVSD
LFYQQDPAPANSAVVRGSYQAGQDVFVVKSDGNKAVKHVVSTPMAVQTTT
QSPSKSQHLAKTHKSFTPEPLRFEFTEQDAIRGSMKYTQAPQANQYYYET
VAQAPREPAKSPAPKIELSKPIKEYTDDPEDSSDTESGKQQDIPKVPTVT
SSATPDDPKDTENYCEKICANVYDENDEIICGSDGYMYTGETQLQCYSSC
LNISVTIKSKGSCS*
BS06811.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:37:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7173-PA | 564 | CG7173-PA | 1..564 | 1..564 | 2970 | 100 | Plus |
| ptip-PA | 2294 | CG32133-PA | 210..467 | 280..511 | 167 | 26.7 | Plus |
| ptip-PA | 2294 | CG32133-PA | 851..1226 | 3..355 | 163 | 25.3 | Plus |
