Clone BS06812 Report

Search the DGRC for BS06812

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:68
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptHdac3-RA
Protein status:BS06812.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06812.3prime Sequence

885 bp (788 high quality bases) assembled on 2005-12-04

> BS06812.3prime
ATGGTCTAGAAAGCTTCTAACTTTCTGCCGAATCGGGCTTGTCTTGGTCC
TGATCGCCGTCGTAGAACTCGTTCTTAGCATCAACCAGCTTGTCCTCATC
GGCTACGGATATTCGCACGTCGGGATCACTCGCCTCCTCCCGGTTGCTGC
GCAGCTCCTCCAAGTCCACATCAGGCGGGGTCTGCACCATTTGGACGCTG
GGCGAGTGCTGGCACATCTTAAGGTTTTCATACACATGCTTAACGATGAG
TTCAAGATACTGCTTTGAGTTAGCATTATCTTGGCGTGAGTTAATCTCTG
GATGGAGTGTAAAGTCGGGGGCGAAAAAGTCGTAATACTCGGTGGCGGGT
AGGTCATTTTCAATGTCTTGGTCCACCAGCAGCGAGGTCTCGTGCGTCCA
GCAGCGGGCCACGTTCCGTAAGGTGTAGCCACCGCCTCCGACCACCAATG
TGGGTACGTTCAGTTCCTTCACAAATTTGACACACTCACCATGTCCCTTG
GTGCTCAGGGAGAAGCAACCTAGTCGATCTCCAGCTAGTGAATCCGCGCC
ACACTGCAAAACGATAGCCGTGGGCCGGTAGAAGTCCATAATGGCAGAAA
TTATGGGTTTGAACACCTGAAAATAGCTCTGGTCATCAATGCCCTCCTTT
AGCGGCACATTAACGCTGTAGTATCGTCCCGATTCGGCGCCTATCTCGTA
CATGTCTCCCGTGCCGGGAAAAAAGTAGTTTCCGTATTTGTGGAACGAAG
CCGTCATCACTCGGTCCGTAAGGTAGAACGCCTCCTGCACCCCGTCGCCG
TGGTGCACATCGATGTCGATGTAGAGCACCCGAGGATGGTACTTAAGCAG
CTCCAGAATGCCGATGACGATGTCATTCACGTAGC

BS06812.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG2128-PA 1317 Hdac3-RA 449..1317 885..17 4345 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
Hdac3-RA 1660 CG2128-RA 726..1594 885..17 4345 100 Minus
CG45100-RA 1660 CG45100-RA 726..1594 885..17 4345 100 Minus
Rpd3-RA 2124 CG7471-RA 652..806 885..731 235 77.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:53:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5472876..5473744 17..885 4345 100 Plus
3L 28110227 3L 4627900..4628054 885..731 235 76.8 Minus
Blast to na_te.dros performed on 2015-02-11 16:53:20 has no hits.

BS06812.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:45 Download gff for BS06812.3prime
Subject Subject Range Query Range Percent Splice Strand
Hdac3-PA 449..1317 17..885 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:54 Download gff for BS06812.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2128-PA 449..1317 17..885 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:46:23 Download gff for BS06812.3prime
Subject Subject Range Query Range Percent Splice Strand
Hdac3-RA 726..1598 11..885 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:41 Download gff for BS06812.3prime
Subject Subject Range Query Range Percent Splice Strand
CG45100-RA 726..1598 11..885 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:41 Download gff for BS06812.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5472872..5473744 11..885 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:46:23 Download gff for BS06812.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1298594..1299466 11..885 99   Plus

BS06812.5prime Sequence

919 bp (836 high quality bases) assembled on 2005-12-04

> BS06812.5prime
GAAGTTATCAGTCGACATGACGGACCGTAGGGTGTCGTACTTCTACAACG
CGGACGTGGGCAACTTCCACTATGGAGCCGGGCATCCCATGAAGCCGCAA
CGCCTGGCGGTCACTCACAGCCTGGTAATGAACTACGGACTGCACAAGAA
AATGAAGATCTACAGGCCGTACAAGGCCAGTGCGCAGGACATGCTCCGCT
TCCACAGCGACGAGTACATCGCCTACTTACAGCAGGTGACTCCACAAAAC
ATTCAGTGCAATTCCGTGGCCTATACGAAGTACCTGGCGCACTTCAGCGT
AGGCGAGGACTGTCCCGTGTTCGATGGCCTCTTCGACTTCTGTGCAATGT
ACACGGGTGCCTCGCTGGAGGGAGCCCAGAAGCTGAACCACAACCACAGC
GACATATGCATAAACTGGTCGGGCGGACTGCATCACGCCAAGAAGTTCGA
GGCAAGCGGATTCTGCTACGTGAATGACATCGTCATCGGCATTCTGGAGC
TGCTTAAGTACCATCCTCGGGTGCTCTACATCGACATCGATGTGCACCAC
GGCGACGGGGTGCAGGAGGCGTTCTACCTTACGGACCGAGTGATGACGGC
TTCGTTCCACAAATACGGAAACTACTTTTTTCCCGGCACGGGAGACATGT
ACGAGATAGGCGCCGAATCGGGACGATACTACAGCGTTAATGTGCCGCTA
AAGGAGGGCATTGATGACCAGAGCTATTTTCAGGTGTTCAAACCCATAAT
TTCTGCCATTATGGACTTCTACCGGCCCACGGCTATCGTTTTGCAGTGTG
GCGCGGATTCACTAGCTGGAGATCGACTAGGTTGCTTTCTCCTGAGCACA
AGGGACATGGTGAGTGTGTCAAATTTGTGAGGAACTGAACGTACCCACAT
TGGTGGTCGGAGGCGGGGG

BS06812.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG2128-PA 1317 Hdac3-RA 1..821 17..837 4105 100 Plus
CG2128-PA 1317 Hdac3-RA 866..902 880..916 185 100 Plus
CG2128-PA 1317 Hdac3-RA 834..865 849..880 160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:26:09
Subject Length Description Subject Range Query Range Score Percent Strand
Hdac3-RA 1660 CG2128-RA 278..1179 17..916 4415 99.6 Plus
CG45100-RA 1660 CG45100-RA 278..1179 17..916 4415 99.6 Plus
Rpd3-RA 2124 CG7471-RA 615..806 428..619 270 76.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:26:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5473291..5473945 916..264 3130 99.2 Minus
3R 32079331 3R 5474165..5474323 175..17 795 100 Minus
3R 32079331 3R 5474015..5474103 263..175 445 100 Minus
3L 28110227 3L 4627863..4628054 428..619 270 76 Plus
Blast to na_te.dros performed on 2015-02-11 09:26:08 has no hits.

BS06812.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:46 Download gff for BS06812.5prime
Subject Subject Range Query Range Percent Splice Strand
Hdac3-PA 1..905 17..919 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:55 Download gff for BS06812.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2128-PA 1..905 17..919 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:09:57 Download gff for BS06812.5prime
Subject Subject Range Query Range Percent Splice Strand
Hdac3-RA 274..1182 13..919 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:49:41 Download gff for BS06812.5prime
Subject Subject Range Query Range Percent Splice Strand
CG45100-RA 274..1182 13..919 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:49:41 Download gff for BS06812.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5474166..5474325 13..174 98   Minus
3R 5473288..5473945 264..919 99 <- Minus
3R 5474015..5474103 175..263 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:09:57 Download gff for BS06812.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1299010..1299667 264..919 99 <- Minus
arm_3R 1299737..1299825 175..263 100 <- Minus
arm_3R 1299888..1300047 13..174 98   Minus

BS06812.complete Sequence

1349 bp (1349 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635628

> BS06812.complete
GAAGTTATCAGTCGACATGACGGACCGTAGGGTGTCGTACTTCTACAACG
CGGACGTGGGCAACTTCCACTATGGAGCCGGGCATCCCATGAAGCCGCAA
CGCCTGGCGGTCACTCACAGCCTGGTAATGAACTACGGACTGCACAAGAA
AATGAAGATCTACAGGCCGTACAAGGCCAGTGCGCAGGACATGCTCCGCT
TCCACAGCGACGAGTACATCGCCTACTTACAGCAGGTGACTCCACAAAAC
ATTCAGTGCAATTCCGTGGCCTATACGAAGTACCTGGCGCACTTCAGCGT
AGGCGAGGACTGTCCCGTGTTCGATGGCCTCTTCGACTTCTGTGCAATGT
ACACGGGTGCCTCGCTGGAGGGAGCCCAGAAGCTGAACCACAACCACAGC
GACATATGCATAAACTGGTCGGGCGGACTGCATCACGCCAAGAAGTTCGA
GGCAAGCGGATTCTGCTACGTGAATGACATCGTCATCGGCATTCTGGAGC
TGCTTAAGTACCATCCTCGGGTGCTCTACATCGACATCGATGTGCACCAC
GGCGACGGGGTGCAGGAGGCGTTCTACCTTACGGACCGAGTGATGACGGC
TTCGTTCCACAAATACGGAAACTACTTTTTTCCCGGCACGGGAGACATGT
ACGAGATAGGCGCCGAATCGGGACGATACTACAGCGTTAATGTGCCGCTA
AAGGAGGGCATTGATGACCAGAGCTATTTTCAGGTGTTCAAACCCATAAT
TTCTGCCATTATGGACTTCTACCGGCCCACGGCTATCGTTTTGCAGTGTG
GCGCGGATTCACTAGCTGGAGATCGACTAGGTTGCTTCTCCCTGAGCACC
AAGGGACATGGTGAGTGTGTCAAATTTGTGAAGGAACTGAACGTACCCAC
ATTGGTGGTCGGAGGCGGTGGCTACACCTTACGGAACGTGGCCCGCTGCT
GGACGCACGAGACCTCGCTGCTGGTGGACCAAGACATTGAAAATGACCTA
CCCGCCACCGAGTATTACGACTTTTTCGCCCCCGACTTTACACTCCATCC
AGAGATTAACTCACGCCAAGATAATGCTAACTCAAAGCAGTATCTTGAAC
TCATCGTTAAGCATGTGTATGAAAACCTTAAGATGTGCCAGCACTCGCCC
AGCGTCCAAATGGTGCAGACCCCGCCTGATGTGGACTTGGAGGAGCTGCG
CAGCAACCGGGAGGAGGCGAGTGATCCCGACGTGCGAATATCCGTAGCCG
ATGAGGACAAGCTGGTTGATGCTAAGAACGAGTTCTACGACGGCGATCAG
GACCAAGACAAGCCCGATTCGGCAGAAAGTTAGAAGCTTTCTAGACCAT

BS06812.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
Hdac3-RA 1317 CG2128-PA 1..1317 17..1333 6585 100 Plus
Rpd3-RA 1566 CG7471-PA 409..600 428..619 270 76 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:51
Subject Length Description Subject Range Query Range Score Percent Strand
Hdac3-RA 1660 CG2128-RA 278..1594 17..1333 6585 100 Plus
CG45100-RA 1660 CG45100-RA 278..1594 17..1333 6585 100 Plus
Rpd3-RA 2124 CG7471-RA 615..806 428..619 270 76 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:53:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5472876..5473945 1333..264 5350 100 Minus
3R 32079331 3R 5474165..5474323 175..17 795 100 Minus
3R 32079331 3R 5474015..5474103 263..175 445 100 Minus
3L 28110227 3L 4627863..4628054 428..619 270 76 Plus
Blast to na_te.dros performed on 2014-11-27 13:53:49 has no hits.

BS06812.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:30 Download gff for BS06812.complete
Subject Subject Range Query Range Percent Splice Strand
Hdac3-RA 1..1317 17..1333 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:17 Download gff for BS06812.complete
Subject Subject Range Query Range Percent Splice Strand
Hdac3-RA 272..1596 13..1339 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:58 Download gff for BS06812.complete
Subject Subject Range Query Range Percent Splice Strand
Hdac3-RA 278..1594 17..1333 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:30 Download gff for BS06812.complete
Subject Subject Range Query Range Percent Splice Strand
Hdac3-RA 272..1596 13..1339 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:27 Download gff for BS06812.complete
Subject Subject Range Query Range Percent Splice Strand
CG45100-RA 278..1594 17..1333 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:27 Download gff for BS06812.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5472876..5473945 264..1333 100 <- Minus
3R 5474015..5474103 175..263 100 <- Minus
3R 5474166..5474323 17..174 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:58 Download gff for BS06812.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1299888..1300045 17..174 100   Minus
arm_3R 1298598..1299667 264..1333 100 <- Minus
arm_3R 1299737..1299825 175..263 100 <- Minus

BS06812.pep Sequence

Translation from 16 to 1332

> BS06812.pep
MTDRRVSYFYNADVGNFHYGAGHPMKPQRLAVTHSLVMNYGLHKKMKIYR
PYKASAQDMLRFHSDEYIAYLQQVTPQNIQCNSVAYTKYLAHFSVGEDCP
VFDGLFDFCAMYTGASLEGAQKLNHNHSDICINWSGGLHHAKKFEASGFC
YVNDIVIGILELLKYHPRVLYIDIDVHHGDGVQEAFYLTDRVMTASFHKY
GNYFFPGTGDMYEIGAESGRYYSVNVPLKEGIDDQSYFQVFKPIISAIMD
FYRPTAIVLQCGADSLAGDRLGCFSLSTKGHGECVKFVKELNVPTLVVGG
GGYTLRNVARCWTHETSLLVDQDIENDLPATEYYDFFAPDFTLHPEINSR
QDNANSKQYLELIVKHVYENLKMCQHSPSVQMVQTPPDVDLEELRSNREE
ASDPDVRISVADEDKLVDAKNEFYDGDQDQDKPDSAES*

BS06812.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:58
Subject Length Description Subject Range Query Range Score Percent Strand
Hdac3-PA 438 CG2128-PA 1..438 1..438 2360 100 Plus
Rpd3-PA 521 CG7471-PA 7..424 4..429 1390 57.5 Plus
HDAC6-PD 883 CG6170-PD 477..780 22..324 290 26.7 Plus
HDAC6-PF 1022 CG6170-PF 559..862 22..324 290 26.7 Plus
HDAC6-PE 1108 CG6170-PE 532..835 22..324 290 26.7 Plus
HDAC6-PD 883 CG6170-PD 81..338 54..309 217 26 Plus
HDAC6-PF 1022 CG6170-PF 163..420 54..309 217 26 Plus