Clone Sequence Records
BS06812.3prime Sequence
885 bp (788 high quality bases) assembled on 2005-12-04
> BS06812.3prime
ATGGTCTAGAAAGCTTCTAACTTTCTGCCGAATCGGGCTTGTCTTGGTCC
TGATCGCCGTCGTAGAACTCGTTCTTAGCATCAACCAGCTTGTCCTCATC
GGCTACGGATATTCGCACGTCGGGATCACTCGCCTCCTCCCGGTTGCTGC
GCAGCTCCTCCAAGTCCACATCAGGCGGGGTCTGCACCATTTGGACGCTG
GGCGAGTGCTGGCACATCTTAAGGTTTTCATACACATGCTTAACGATGAG
TTCAAGATACTGCTTTGAGTTAGCATTATCTTGGCGTGAGTTAATCTCTG
GATGGAGTGTAAAGTCGGGGGCGAAAAAGTCGTAATACTCGGTGGCGGGT
AGGTCATTTTCAATGTCTTGGTCCACCAGCAGCGAGGTCTCGTGCGTCCA
GCAGCGGGCCACGTTCCGTAAGGTGTAGCCACCGCCTCCGACCACCAATG
TGGGTACGTTCAGTTCCTTCACAAATTTGACACACTCACCATGTCCCTTG
GTGCTCAGGGAGAAGCAACCTAGTCGATCTCCAGCTAGTGAATCCGCGCC
ACACTGCAAAACGATAGCCGTGGGCCGGTAGAAGTCCATAATGGCAGAAA
TTATGGGTTTGAACACCTGAAAATAGCTCTGGTCATCAATGCCCTCCTTT
AGCGGCACATTAACGCTGTAGTATCGTCCCGATTCGGCGCCTATCTCGTA
CATGTCTCCCGTGCCGGGAAAAAAGTAGTTTCCGTATTTGTGGAACGAAG
CCGTCATCACTCGGTCCGTAAGGTAGAACGCCTCCTGCACCCCGTCGCCG
TGGTGCACATCGATGTCGATGTAGAGCACCCGAGGATGGTACTTAAGCAG
CTCCAGAATGCCGATGACGATGTCATTCACGTAGC
BS06812.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2128-PA | 1317 | Hdac3-RA | 449..1317 | 885..17 | 4345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:53:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hdac3-RA | 1660 | CG2128-RA | 726..1594 | 885..17 | 4345 | 100 | Minus |
CG45100-RA | 1660 | CG45100-RA | 726..1594 | 885..17 | 4345 | 100 | Minus |
Rpd3-RA | 2124 | CG7471-RA | 652..806 | 885..731 | 235 | 77.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:53:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5472876..5473744 | 17..885 | 4345 | 100 | Plus |
3L | 28110227 | 3L | 4627900..4628054 | 885..731 | 235 | 76.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:53:20 has no hits.
BS06812.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:45 Download gff for
BS06812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hdac3-PA | 449..1317 | 17..885 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:54 Download gff for
BS06812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2128-PA | 449..1317 | 17..885 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:46:23 Download gff for
BS06812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hdac3-RA | 726..1598 | 11..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:41 Download gff for
BS06812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG45100-RA | 726..1598 | 11..885 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:41 Download gff for
BS06812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5472872..5473744 | 11..885 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:46:23 Download gff for
BS06812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1298594..1299466 | 11..885 | 99 | | Plus |
BS06812.5prime Sequence
919 bp (836 high quality bases) assembled on 2005-12-04
> BS06812.5prime
GAAGTTATCAGTCGACATGACGGACCGTAGGGTGTCGTACTTCTACAACG
CGGACGTGGGCAACTTCCACTATGGAGCCGGGCATCCCATGAAGCCGCAA
CGCCTGGCGGTCACTCACAGCCTGGTAATGAACTACGGACTGCACAAGAA
AATGAAGATCTACAGGCCGTACAAGGCCAGTGCGCAGGACATGCTCCGCT
TCCACAGCGACGAGTACATCGCCTACTTACAGCAGGTGACTCCACAAAAC
ATTCAGTGCAATTCCGTGGCCTATACGAAGTACCTGGCGCACTTCAGCGT
AGGCGAGGACTGTCCCGTGTTCGATGGCCTCTTCGACTTCTGTGCAATGT
ACACGGGTGCCTCGCTGGAGGGAGCCCAGAAGCTGAACCACAACCACAGC
GACATATGCATAAACTGGTCGGGCGGACTGCATCACGCCAAGAAGTTCGA
GGCAAGCGGATTCTGCTACGTGAATGACATCGTCATCGGCATTCTGGAGC
TGCTTAAGTACCATCCTCGGGTGCTCTACATCGACATCGATGTGCACCAC
GGCGACGGGGTGCAGGAGGCGTTCTACCTTACGGACCGAGTGATGACGGC
TTCGTTCCACAAATACGGAAACTACTTTTTTCCCGGCACGGGAGACATGT
ACGAGATAGGCGCCGAATCGGGACGATACTACAGCGTTAATGTGCCGCTA
AAGGAGGGCATTGATGACCAGAGCTATTTTCAGGTGTTCAAACCCATAAT
TTCTGCCATTATGGACTTCTACCGGCCCACGGCTATCGTTTTGCAGTGTG
GCGCGGATTCACTAGCTGGAGATCGACTAGGTTGCTTTCTCCTGAGCACA
AGGGACATGGTGAGTGTGTCAAATTTGTGAGGAACTGAACGTACCCACAT
TGGTGGTCGGAGGCGGGGG
BS06812.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2128-PA | 1317 | Hdac3-RA | 1..821 | 17..837 | 4105 | 100 | Plus |
CG2128-PA | 1317 | Hdac3-RA | 866..902 | 880..916 | 185 | 100 | Plus |
CG2128-PA | 1317 | Hdac3-RA | 834..865 | 849..880 | 160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:26:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hdac3-RA | 1660 | CG2128-RA | 278..1179 | 17..916 | 4415 | 99.6 | Plus |
CG45100-RA | 1660 | CG45100-RA | 278..1179 | 17..916 | 4415 | 99.6 | Plus |
Rpd3-RA | 2124 | CG7471-RA | 615..806 | 428..619 | 270 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:26:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5473291..5473945 | 916..264 | 3130 | 99.2 | Minus |
3R | 32079331 | 3R | 5474165..5474323 | 175..17 | 795 | 100 | Minus |
3R | 32079331 | 3R | 5474015..5474103 | 263..175 | 445 | 100 | Minus |
3L | 28110227 | 3L | 4627863..4628054 | 428..619 | 270 | 76 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:26:08 has no hits.
BS06812.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:46 Download gff for
BS06812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hdac3-PA | 1..905 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:55 Download gff for
BS06812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2128-PA | 1..905 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:09:57 Download gff for
BS06812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hdac3-RA | 274..1182 | 13..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:49:41 Download gff for
BS06812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG45100-RA | 274..1182 | 13..919 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:49:41 Download gff for
BS06812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5474166..5474325 | 13..174 | 98 | | Minus |
3R | 5473288..5473945 | 264..919 | 99 | <- | Minus |
3R | 5474015..5474103 | 175..263 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:09:57 Download gff for
BS06812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1299010..1299667 | 264..919 | 99 | <- | Minus |
arm_3R | 1299737..1299825 | 175..263 | 100 | <- | Minus |
arm_3R | 1299888..1300047 | 13..174 | 98 | | Minus |
BS06812.complete Sequence
1349 bp (1349 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635628
> BS06812.complete
GAAGTTATCAGTCGACATGACGGACCGTAGGGTGTCGTACTTCTACAACG
CGGACGTGGGCAACTTCCACTATGGAGCCGGGCATCCCATGAAGCCGCAA
CGCCTGGCGGTCACTCACAGCCTGGTAATGAACTACGGACTGCACAAGAA
AATGAAGATCTACAGGCCGTACAAGGCCAGTGCGCAGGACATGCTCCGCT
TCCACAGCGACGAGTACATCGCCTACTTACAGCAGGTGACTCCACAAAAC
ATTCAGTGCAATTCCGTGGCCTATACGAAGTACCTGGCGCACTTCAGCGT
AGGCGAGGACTGTCCCGTGTTCGATGGCCTCTTCGACTTCTGTGCAATGT
ACACGGGTGCCTCGCTGGAGGGAGCCCAGAAGCTGAACCACAACCACAGC
GACATATGCATAAACTGGTCGGGCGGACTGCATCACGCCAAGAAGTTCGA
GGCAAGCGGATTCTGCTACGTGAATGACATCGTCATCGGCATTCTGGAGC
TGCTTAAGTACCATCCTCGGGTGCTCTACATCGACATCGATGTGCACCAC
GGCGACGGGGTGCAGGAGGCGTTCTACCTTACGGACCGAGTGATGACGGC
TTCGTTCCACAAATACGGAAACTACTTTTTTCCCGGCACGGGAGACATGT
ACGAGATAGGCGCCGAATCGGGACGATACTACAGCGTTAATGTGCCGCTA
AAGGAGGGCATTGATGACCAGAGCTATTTTCAGGTGTTCAAACCCATAAT
TTCTGCCATTATGGACTTCTACCGGCCCACGGCTATCGTTTTGCAGTGTG
GCGCGGATTCACTAGCTGGAGATCGACTAGGTTGCTTCTCCCTGAGCACC
AAGGGACATGGTGAGTGTGTCAAATTTGTGAAGGAACTGAACGTACCCAC
ATTGGTGGTCGGAGGCGGTGGCTACACCTTACGGAACGTGGCCCGCTGCT
GGACGCACGAGACCTCGCTGCTGGTGGACCAAGACATTGAAAATGACCTA
CCCGCCACCGAGTATTACGACTTTTTCGCCCCCGACTTTACACTCCATCC
AGAGATTAACTCACGCCAAGATAATGCTAACTCAAAGCAGTATCTTGAAC
TCATCGTTAAGCATGTGTATGAAAACCTTAAGATGTGCCAGCACTCGCCC
AGCGTCCAAATGGTGCAGACCCCGCCTGATGTGGACTTGGAGGAGCTGCG
CAGCAACCGGGAGGAGGCGAGTGATCCCGACGTGCGAATATCCGTAGCCG
ATGAGGACAAGCTGGTTGATGCTAAGAACGAGTTCTACGACGGCGATCAG
GACCAAGACAAGCCCGATTCGGCAGAAAGTTAGAAGCTTTCTAGACCAT
BS06812.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hdac3-RA | 1317 | CG2128-PA | 1..1317 | 17..1333 | 6585 | 100 | Plus |
Rpd3-RA | 1566 | CG7471-PA | 409..600 | 428..619 | 270 | 76 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hdac3-RA | 1660 | CG2128-RA | 278..1594 | 17..1333 | 6585 | 100 | Plus |
CG45100-RA | 1660 | CG45100-RA | 278..1594 | 17..1333 | 6585 | 100 | Plus |
Rpd3-RA | 2124 | CG7471-RA | 615..806 | 428..619 | 270 | 76 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:53:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5472876..5473945 | 1333..264 | 5350 | 100 | Minus |
3R | 32079331 | 3R | 5474165..5474323 | 175..17 | 795 | 100 | Minus |
3R | 32079331 | 3R | 5474015..5474103 | 263..175 | 445 | 100 | Minus |
3L | 28110227 | 3L | 4627863..4628054 | 428..619 | 270 | 76 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:53:49 has no hits.
BS06812.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:30 Download gff for
BS06812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hdac3-RA | 1..1317 | 17..1333 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:17 Download gff for
BS06812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hdac3-RA | 272..1596 | 13..1339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:58 Download gff for
BS06812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hdac3-RA | 278..1594 | 17..1333 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:30 Download gff for
BS06812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hdac3-RA | 272..1596 | 13..1339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:27 Download gff for
BS06812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG45100-RA | 278..1594 | 17..1333 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:27 Download gff for
BS06812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5472876..5473945 | 264..1333 | 100 | <- | Minus |
3R | 5474015..5474103 | 175..263 | 100 | <- | Minus |
3R | 5474166..5474323 | 17..174 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:58 Download gff for
BS06812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1299888..1300045 | 17..174 | 100 | | Minus |
arm_3R | 1298598..1299667 | 264..1333 | 100 | <- | Minus |
arm_3R | 1299737..1299825 | 175..263 | 100 | <- | Minus |
BS06812.pep Sequence
Translation from 16 to 1332
> BS06812.pep
MTDRRVSYFYNADVGNFHYGAGHPMKPQRLAVTHSLVMNYGLHKKMKIYR
PYKASAQDMLRFHSDEYIAYLQQVTPQNIQCNSVAYTKYLAHFSVGEDCP
VFDGLFDFCAMYTGASLEGAQKLNHNHSDICINWSGGLHHAKKFEASGFC
YVNDIVIGILELLKYHPRVLYIDIDVHHGDGVQEAFYLTDRVMTASFHKY
GNYFFPGTGDMYEIGAESGRYYSVNVPLKEGIDDQSYFQVFKPIISAIMD
FYRPTAIVLQCGADSLAGDRLGCFSLSTKGHGECVKFVKELNVPTLVVGG
GGYTLRNVARCWTHETSLLVDQDIENDLPATEYYDFFAPDFTLHPEINSR
QDNANSKQYLELIVKHVYENLKMCQHSPSVQMVQTPPDVDLEELRSNREE
ASDPDVRISVADEDKLVDAKNEFYDGDQDQDKPDSAES*
BS06812.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hdac3-PA | 438 | CG2128-PA | 1..438 | 1..438 | 2360 | 100 | Plus |
Rpd3-PA | 521 | CG7471-PA | 7..424 | 4..429 | 1390 | 57.5 | Plus |
HDAC6-PD | 883 | CG6170-PD | 477..780 | 22..324 | 290 | 26.7 | Plus |
HDAC6-PF | 1022 | CG6170-PF | 559..862 | 22..324 | 290 | 26.7 | Plus |
HDAC6-PE | 1108 | CG6170-PE | 532..835 | 22..324 | 290 | 26.7 | Plus |
HDAC6-PD | 883 | CG6170-PD | 81..338 | 54..309 | 217 | 26 | Plus |
HDAC6-PF | 1022 | CG6170-PF | 163..420 | 54..309 | 217 | 26 | Plus |