Clone Sequence Records
BS06813.3prime Sequence
930 bp (820 high quality bases) assembled on 2005-12-04
> BS06813.3prime
ATGGTCTAGAAAGCTTTTACTGTGGAGCCGATCCGGCTGAAGCGGCGGCC
TCCTTGGCCAAAACCAGGCTATTATATCCGCGCTCGTTCATCCCGACGCG
AAGGTTTTCGTTGATATTTTTCGTATAGGTCTTGTAGATTTTTACCTTTT
CGCAGAAGTCGATCCAAAAGTTGTCCTCGCTCTCGGGCTCCGGATTGAAG
AGACTCTTGAAGCCATCGTATATGCCAGAGGAGACCTTGCGTATGGTCTG
CGCCCTCTCCTTGAACTCCACCTCGTCGGACAGGTCCATTTTCCAGAGCT
CCAGATTGCCCACATACCGGCGAAGTCGGCGCATTATGTCCACGCACTCC
GGATTGCGCAGCAGCATCAACTTGGTGAACTCCACCTCCTTGAACTGCTC
GAGGATCTCCAGGCATTTGCCCACATTGGCGCGCCGCAGGCCCAAACATT
CGCGCAGCTGCTGGGAAAGTTGGATGAAGTCTCGCTCCATGAAGAGGGCA
TCCTCGTGCTCAATGAGCTCCTCGATGAATCGCAAAGCCTCCTGCTTGGG
TATTTCGCTGCGTGTTGGCTCCACCACGATCCTATCGGGCATGGACTCCG
GATTGATTTGGCCGCTCTCTAGTTTCAGTTTGAGCTCCAAGGCTTCTTTG
CGGGCGTTCTCCATCCAGGCTTCCTCGGCAGCGGCGCTTTCGAAACTCTC
CGGCTTTTTGTAGTTTATAACGATTCCCAAACACTTGGCTGTGGGCATGT
ACACCATGAGCATCTCGTTCCGGATGTTATTGACTGGCCGCGACCGCTTC
TGAATCGGAGTTACTGCAGCCGTGGGCTTGGATTTCTTCACTGATTCTTG
CTGGAAGGTGGGGGTCGCCGCAGCCGGAGCAGCGGGGATGGCTGCGGCGG
TAGCCAGACCCTCGGTGGGAACCCTTCGCT
BS06813.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7946-PA | 1428 | CG7946-RA | 599..1428 | 846..17 | 4150 | 100 | Minus |
CG7946-PA | 1428 | CG7946-RA | 515..589 | 930..856 | 375 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:42:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7946-RB | 1884 | CG7946-RB | 642..1556 | 930..16 | 4530 | 99.8 | Minus |
CG7946-RA | 2042 | CG7946-RA | 800..1714 | 930..16 | 4530 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:42:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30053544..30054306 | 778..16 | 3815 | 100 | Minus |
3R | 32079331 | 3R | 30053313..30053464 | 930..779 | 665 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-02 20:42:14 has no hits.
BS06813.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:47 Download gff for
BS06813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7946-PA | 515..1428 | 17..930 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:57 Download gff for
BS06813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7946-PA | 515..1428 | 17..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:05:24 Download gff for
BS06813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7946-RA | 800..1714 | 16..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:17:39 Download gff for
BS06813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7946-RA | 800..1714 | 16..930 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:17:39 Download gff for
BS06813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30053313..30053464 | 779..930 | 98 | -> | Minus |
3R | 30053544..30054306 | 16..778 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:05:24 Download gff for
BS06813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25879035..25879186 | 779..930 | 98 | -> | Minus |
arm_3R | 25879266..25880028 | 16..778 | 100 | | Minus |
BS06813.5prime Sequence
928 bp (860 high quality bases) assembled on 2005-12-04
> BS06813.5prime
GAAGTTATCAGTCGACATGGGTAAGGAAAAGGCGGCCGCCTCCTACAGCA
TTGGCGACCTGGTGTTCGCCAAGGTGAAGGGCTATCCGCCCTGGCCGGCC
AAAATCACCAAGAGCAACAACAACAAGAAGTACAATGTTTACTTCTACGG
CACGGGCGAAACGGCCAACATCAAGTTGGAGGATCTGTTCCCGTACGCCA
GCAACAAGGAGCGCTTCGCCACCGAGAAGATCATGAAGCGGGCCAAGTTC
ATCGAGGCCATCGATCAGATCGAGAGCGCCTTGCGCGGCGAGGACTCGGC
GCCCATTGATTTGCTCGACGGCGCGGAGCCAGTTGCTCCGCCCACAACTG
GTGATGGCGTCAAGACGGAGGAGCCCAAGCCGGAGCCGGGACCGGAGCCA
GCCACTGCTGCACCAGTCGCAGCAGCGGCCGAGAAGCCCAAGAAGAGCGG
CACCCGGAAGACCAAGGCACCACCGCGCCATGTGGACGGGGATAGTGAAG
CAGGCGCGGAACTAGCACCTCCGCCGGCCAAGCGAAGGGTTCCCACCGAG
GGTCTGGCTACCGCCGCAGCCATCCCCGCTGCTCCGGCTGCGGCGACCCC
CACCTCCAGCAAGAAATCAGTGAAGAAATCCAAGCCCACGGCTGCAGTAA
CTCCGATTCAGAAGCGGTCGCGGCCAGTCAATAACATCCGGAACGAGATG
CTCATGGTGTACATGCCCACAGCCAAGTGTTTGGGAATCGTTATAAACTA
CAAAAAGCCGGAGAGTTTCGAAAGCGCCGCTGCCGAGGAAGCCTGGATGG
AGAACGCCCGCAAAGAAGCCTTGGAGCTCAAACTGAAACTAGAGAGCGGC
CAAATCAATCCGGAGTCCATGCCCGATAGGATCGTGGTGGAGCCACACGC
AGCGAAATACCAAGCAGGAGGCTTTGCG
BS06813.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7946-PA | 1428 | CG7946-RA | 1..879 | 17..895 | 4395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:42:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7946-RB | 1884 | CG7946-RB | 124..1041 | 13..928 | 4525 | 99.7 | Plus |
CG7946-RA | 2042 | CG7946-RA | 282..1199 | 13..928 | 4525 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:42:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30052795..30053464 | 13..682 | 3335 | 99.9 | Plus |
3R | 32079331 | 3R | 30053544..30053791 | 683..928 | 1140 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:42:15 has no hits.
BS06813.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:48 Download gff for
BS06813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7946-PA | 1..914 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:58 Download gff for
BS06813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7946-PA | 1..914 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:02:14 Download gff for
BS06813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7946-RA | 277..1199 | 8..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:12:33 Download gff for
BS06813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7946-RA | 277..1199 | 8..928 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:12:33 Download gff for
BS06813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30052790..30053464 | 8..682 | 99 | -> | Plus |
3R | 30053544..30053791 | 683..928 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:02:14 Download gff for
BS06813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25878512..25879186 | 8..682 | 99 | -> | Plus |
arm_3R | 25879266..25879513 | 683..928 | 99 | | Plus |
BS06813.complete Sequence
1460 bp (1460 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635629
> BS06813.complete
GAAGTTATCAGTCGACATGGGTAAGGAAAAGGCGGCCGCCTCCTACAGCA
TTGGCGACCTGGTGTTCGCCAAGGTGAAGGGCTATCCGCCCTGGCCGGCC
AAAATCACCAAGAGCAACAACAACAAGAAGTACAATGTTTACTTCTACGG
CACGGGCGAAACGGCCAACATCAAGTTGGAGGATCTGTTCCCGTACGCCA
GCAACAAGGAGCGCTTCGCCACCGAGAAGATCATGAAGCGGGCCAAGTTC
ATCGAGGCCATCGATCAGATCGAGAGCGCCTTGCGCGGCGAGGACTCGGC
GCCCATTGATTTGCTCGACGGCGCGGAGCCAGTTGCTCCGCCCACAACTG
GTGATGGCGTCAAGACGGAGGAGCCCAAGCCGGAGCCGGGACCGGAGCCA
GCCACTGCTGCACCAGTCGCAGCAGCGGCCGAGAAGCCCAAGAAGAGCGG
CACCCGGAAGACCAAGGCACCACCGCGCCATGTGGACGGGGATAGTGAAG
CAGGCGCGGAACTAGCACCTCCGCCGGCCAAGCGAAGGGTTCCCACCGAG
GGTCTGGCTACCGCCGCAGCCATCCCCGCTGCTCCGGCTGCGGCGACCCC
CACCTCCAGCAAGAAATCAGTGAAGAAATCCAAGCCCACGGCTGCAGTAA
CTCCGATTCAGAAGCGGTCGCGGCCAGTCAATAACATCCGGAACGAGATG
CTCATGGTGTACATGCCCACAGCCAAGTGTTTGGGAATCGTTATAAACTA
CAAAAAGCCGGAGAGTTTCGAAAGCGCCGCTGCCGAGGAAGCCTGGATGG
AGAACGCCCGCAAAGAAGCCTTGGAGCTCAAACTGAAACTAGAGAGCGGC
CAAATCAATCCGGAGTCCATGCCCGATAGGATCGTGGTGGAGCCAACACG
CAGCGAAATACCCAAGCAGGAGGCTTTGCGATTCATCGAGGAGCTCATTG
AGCACGAGGATGCCCTCTTCATGGAGCGAGACTTCATCCAACTTTCCCAG
CAGCTGCGCGAATGTTTGGGCCTGCGGCGCGCCAATGTGGGCAAATGCCT
GGAGATCCTCGAGCAGTTCAAGGAGGTGGAGTTCACCAAGTTGATGCTGC
TGCGCAATCCGGAGTGCGTGGACATAATGCGCCGACTTCGCCGGTATGTG
GGCAATCTGGAGCTCTGGAAAATGGACCTGTCCGACGAGGTGGAGTTCAA
GGAGAGGGCGCAGACCATACGCAAGGTCTCCTCTGGCATATACGATGGCT
TCAAGAGTCTCTTCAATCCGGAGCCCGAGAGCGAGGACAACTTTTGGATC
GACTTCTGCGAAAAGGTAAAAATCTACAAGACCTATACGAAAAATATCAA
CGAAAACCTTCGCGTCGGGATGAACGAGCGCGGATATAATAGCCTGGTTT
TGGCCAAGGAGGCCGCCGCTTCAGCCGGATCGGCTCCACAGTAAAAGCTT
TCTAGACCAT
BS06813.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:37:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7946-RB | 1428 | CG7946-PB | 1..1428 | 17..1444 | 7140 | 100 | Plus |
CG7946-RA | 1428 | CG7946-PA | 1..1428 | 17..1444 | 7140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:37:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7946-RB | 1884 | CG7946-RB | 124..1556 | 13..1445 | 7150 | 99.9 | Plus |
CG7946-RA | 2042 | CG7946-RA | 282..1714 | 13..1445 | 7150 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:37:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30053544..30054306 | 683..1445 | 3815 | 100 | Plus |
3R | 32079331 | 3R | 30052795..30053464 | 13..682 | 3335 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:37:21 has no hits.
BS06813.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:32 Download gff for
BS06813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7946-RA | 1..1428 | 17..1444 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:19 Download gff for
BS06813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7946-RA | 277..1714 | 8..1445 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:19:36 Download gff for
BS06813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7946-RA | 286..1711 | 17..1442 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:32 Download gff for
BS06813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7946-RA | 277..1714 | 8..1445 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:37 Download gff for
BS06813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7946-RA | 286..1711 | 17..1442 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:37 Download gff for
BS06813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30052799..30053464 | 17..682 | 100 | -> | Plus |
3R | 30053544..30054303 | 683..1442 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:19:36 Download gff for
BS06813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25878521..25879186 | 17..682 | 100 | -> | Plus |
arm_3R | 25879266..25880025 | 683..1442 | 100 | | Plus |
BS06813.pep Sequence
Translation from 16 to 1443
> BS06813.pep
MGKEKAAASYSIGDLVFAKVKGYPPWPAKITKSNNNKKYNVYFYGTGETA
NIKLEDLFPYASNKERFATEKIMKRAKFIEAIDQIESALRGEDSAPIDLL
DGAEPVAPPTTGDGVKTEEPKPEPGPEPATAAPVAAAAEKPKKSGTRKTK
APPRHVDGDSEAGAELAPPPAKRRVPTEGLATAAAIPAAPAAATPTSSKK
SVKKSKPTAAVTPIQKRSRPVNNIRNEMLMVYMPTAKCLGIVINYKKPES
FESAAAEEAWMENARKEALELKLKLESGQINPESMPDRIVVEPTRSEIPK
QEALRFIEELIEHEDALFMERDFIQLSQQLRECLGLRRANVGKCLEILEQ
FKEVEFTKLMLLRNPECVDIMRRLRRYVGNLELWKMDLSDEVEFKERAQT
IRKVSSGIYDGFKSLFNPEPESEDNFWIDFCEKVKIYKTYTKNINENLRV
GMNERGYNSLVLAKEAAASAGSAPQ*
BS06813.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7946-PB | 475 | CG7946-PB | 1..475 | 1..475 | 2440 | 100 | Plus |
CG7946-PA | 475 | CG7946-PA | 1..475 | 1..475 | 2440 | 100 | Plus |