Clone BS06813 Report

Search the DGRC for BS06813

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:68
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG7946-RA
Protein status:BS06813.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06813.3prime Sequence

930 bp (820 high quality bases) assembled on 2005-12-04

> BS06813.3prime
ATGGTCTAGAAAGCTTTTACTGTGGAGCCGATCCGGCTGAAGCGGCGGCC
TCCTTGGCCAAAACCAGGCTATTATATCCGCGCTCGTTCATCCCGACGCG
AAGGTTTTCGTTGATATTTTTCGTATAGGTCTTGTAGATTTTTACCTTTT
CGCAGAAGTCGATCCAAAAGTTGTCCTCGCTCTCGGGCTCCGGATTGAAG
AGACTCTTGAAGCCATCGTATATGCCAGAGGAGACCTTGCGTATGGTCTG
CGCCCTCTCCTTGAACTCCACCTCGTCGGACAGGTCCATTTTCCAGAGCT
CCAGATTGCCCACATACCGGCGAAGTCGGCGCATTATGTCCACGCACTCC
GGATTGCGCAGCAGCATCAACTTGGTGAACTCCACCTCCTTGAACTGCTC
GAGGATCTCCAGGCATTTGCCCACATTGGCGCGCCGCAGGCCCAAACATT
CGCGCAGCTGCTGGGAAAGTTGGATGAAGTCTCGCTCCATGAAGAGGGCA
TCCTCGTGCTCAATGAGCTCCTCGATGAATCGCAAAGCCTCCTGCTTGGG
TATTTCGCTGCGTGTTGGCTCCACCACGATCCTATCGGGCATGGACTCCG
GATTGATTTGGCCGCTCTCTAGTTTCAGTTTGAGCTCCAAGGCTTCTTTG
CGGGCGTTCTCCATCCAGGCTTCCTCGGCAGCGGCGCTTTCGAAACTCTC
CGGCTTTTTGTAGTTTATAACGATTCCCAAACACTTGGCTGTGGGCATGT
ACACCATGAGCATCTCGTTCCGGATGTTATTGACTGGCCGCGACCGCTTC
TGAATCGGAGTTACTGCAGCCGTGGGCTTGGATTTCTTCACTGATTCTTG
CTGGAAGGTGGGGGTCGCCGCAGCCGGAGCAGCGGGGATGGCTGCGGCGG
TAGCCAGACCCTCGGTGGGAACCCTTCGCT

BS06813.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7946-PA 1428 CG7946-RA 599..1428 846..17 4150 100 Minus
CG7946-PA 1428 CG7946-RA 515..589 930..856 375 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:42:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG7946-RB 1884 CG7946-RB 642..1556 930..16 4530 99.8 Minus
CG7946-RA 2042 CG7946-RA 800..1714 930..16 4530 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30053544..30054306 778..16 3815 100 Minus
3R 32079331 3R 30053313..30053464 930..779 665 98.7 Minus
Blast to na_te.dros performed on 2015-02-02 20:42:14 has no hits.

BS06813.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:47 Download gff for BS06813.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7946-PA 515..1428 17..930 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:57 Download gff for BS06813.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7946-PA 515..1428 17..930 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:05:24 Download gff for BS06813.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7946-RA 800..1714 16..930 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:17:39 Download gff for BS06813.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7946-RA 800..1714 16..930 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:17:39 Download gff for BS06813.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30053313..30053464 779..930 98 -> Minus
3R 30053544..30054306 16..778 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:05:24 Download gff for BS06813.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25879035..25879186 779..930 98 -> Minus
arm_3R 25879266..25880028 16..778 100   Minus

BS06813.5prime Sequence

928 bp (860 high quality bases) assembled on 2005-12-04

> BS06813.5prime
GAAGTTATCAGTCGACATGGGTAAGGAAAAGGCGGCCGCCTCCTACAGCA
TTGGCGACCTGGTGTTCGCCAAGGTGAAGGGCTATCCGCCCTGGCCGGCC
AAAATCACCAAGAGCAACAACAACAAGAAGTACAATGTTTACTTCTACGG
CACGGGCGAAACGGCCAACATCAAGTTGGAGGATCTGTTCCCGTACGCCA
GCAACAAGGAGCGCTTCGCCACCGAGAAGATCATGAAGCGGGCCAAGTTC
ATCGAGGCCATCGATCAGATCGAGAGCGCCTTGCGCGGCGAGGACTCGGC
GCCCATTGATTTGCTCGACGGCGCGGAGCCAGTTGCTCCGCCCACAACTG
GTGATGGCGTCAAGACGGAGGAGCCCAAGCCGGAGCCGGGACCGGAGCCA
GCCACTGCTGCACCAGTCGCAGCAGCGGCCGAGAAGCCCAAGAAGAGCGG
CACCCGGAAGACCAAGGCACCACCGCGCCATGTGGACGGGGATAGTGAAG
CAGGCGCGGAACTAGCACCTCCGCCGGCCAAGCGAAGGGTTCCCACCGAG
GGTCTGGCTACCGCCGCAGCCATCCCCGCTGCTCCGGCTGCGGCGACCCC
CACCTCCAGCAAGAAATCAGTGAAGAAATCCAAGCCCACGGCTGCAGTAA
CTCCGATTCAGAAGCGGTCGCGGCCAGTCAATAACATCCGGAACGAGATG
CTCATGGTGTACATGCCCACAGCCAAGTGTTTGGGAATCGTTATAAACTA
CAAAAAGCCGGAGAGTTTCGAAAGCGCCGCTGCCGAGGAAGCCTGGATGG
AGAACGCCCGCAAAGAAGCCTTGGAGCTCAAACTGAAACTAGAGAGCGGC
CAAATCAATCCGGAGTCCATGCCCGATAGGATCGTGGTGGAGCCACACGC
AGCGAAATACCAAGCAGGAGGCTTTGCG

BS06813.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG7946-PA 1428 CG7946-RA 1..879 17..895 4395 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:42:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG7946-RB 1884 CG7946-RB 124..1041 13..928 4525 99.7 Plus
CG7946-RA 2042 CG7946-RA 282..1199 13..928 4525 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:42:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30052795..30053464 13..682 3335 99.9 Plus
3R 32079331 3R 30053544..30053791 683..928 1140 99.2 Plus
Blast to na_te.dros performed on 2015-02-12 00:42:15 has no hits.

BS06813.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:48 Download gff for BS06813.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7946-PA 1..914 17..928 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:58 Download gff for BS06813.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7946-PA 1..914 17..928 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:02:14 Download gff for BS06813.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7946-RA 277..1199 8..928 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:12:33 Download gff for BS06813.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7946-RA 277..1199 8..928 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:12:33 Download gff for BS06813.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30052790..30053464 8..682 99 -> Plus
3R 30053544..30053791 683..928 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:02:14 Download gff for BS06813.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25878512..25879186 8..682 99 -> Plus
arm_3R 25879266..25879513 683..928 99   Plus

BS06813.complete Sequence

1460 bp (1460 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635629

> BS06813.complete
GAAGTTATCAGTCGACATGGGTAAGGAAAAGGCGGCCGCCTCCTACAGCA
TTGGCGACCTGGTGTTCGCCAAGGTGAAGGGCTATCCGCCCTGGCCGGCC
AAAATCACCAAGAGCAACAACAACAAGAAGTACAATGTTTACTTCTACGG
CACGGGCGAAACGGCCAACATCAAGTTGGAGGATCTGTTCCCGTACGCCA
GCAACAAGGAGCGCTTCGCCACCGAGAAGATCATGAAGCGGGCCAAGTTC
ATCGAGGCCATCGATCAGATCGAGAGCGCCTTGCGCGGCGAGGACTCGGC
GCCCATTGATTTGCTCGACGGCGCGGAGCCAGTTGCTCCGCCCACAACTG
GTGATGGCGTCAAGACGGAGGAGCCCAAGCCGGAGCCGGGACCGGAGCCA
GCCACTGCTGCACCAGTCGCAGCAGCGGCCGAGAAGCCCAAGAAGAGCGG
CACCCGGAAGACCAAGGCACCACCGCGCCATGTGGACGGGGATAGTGAAG
CAGGCGCGGAACTAGCACCTCCGCCGGCCAAGCGAAGGGTTCCCACCGAG
GGTCTGGCTACCGCCGCAGCCATCCCCGCTGCTCCGGCTGCGGCGACCCC
CACCTCCAGCAAGAAATCAGTGAAGAAATCCAAGCCCACGGCTGCAGTAA
CTCCGATTCAGAAGCGGTCGCGGCCAGTCAATAACATCCGGAACGAGATG
CTCATGGTGTACATGCCCACAGCCAAGTGTTTGGGAATCGTTATAAACTA
CAAAAAGCCGGAGAGTTTCGAAAGCGCCGCTGCCGAGGAAGCCTGGATGG
AGAACGCCCGCAAAGAAGCCTTGGAGCTCAAACTGAAACTAGAGAGCGGC
CAAATCAATCCGGAGTCCATGCCCGATAGGATCGTGGTGGAGCCAACACG
CAGCGAAATACCCAAGCAGGAGGCTTTGCGATTCATCGAGGAGCTCATTG
AGCACGAGGATGCCCTCTTCATGGAGCGAGACTTCATCCAACTTTCCCAG
CAGCTGCGCGAATGTTTGGGCCTGCGGCGCGCCAATGTGGGCAAATGCCT
GGAGATCCTCGAGCAGTTCAAGGAGGTGGAGTTCACCAAGTTGATGCTGC
TGCGCAATCCGGAGTGCGTGGACATAATGCGCCGACTTCGCCGGTATGTG
GGCAATCTGGAGCTCTGGAAAATGGACCTGTCCGACGAGGTGGAGTTCAA
GGAGAGGGCGCAGACCATACGCAAGGTCTCCTCTGGCATATACGATGGCT
TCAAGAGTCTCTTCAATCCGGAGCCCGAGAGCGAGGACAACTTTTGGATC
GACTTCTGCGAAAAGGTAAAAATCTACAAGACCTATACGAAAAATATCAA
CGAAAACCTTCGCGTCGGGATGAACGAGCGCGGATATAATAGCCTGGTTT
TGGCCAAGGAGGCCGCCGCTTCAGCCGGATCGGCTCCACAGTAAAAGCTT
TCTAGACCAT

BS06813.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:37:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7946-RB 1428 CG7946-PB 1..1428 17..1444 7140 100 Plus
CG7946-RA 1428 CG7946-PA 1..1428 17..1444 7140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG7946-RB 1884 CG7946-RB 124..1556 13..1445 7150 99.9 Plus
CG7946-RA 2042 CG7946-RA 282..1714 13..1445 7150 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:37:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30053544..30054306 683..1445 3815 100 Plus
3R 32079331 3R 30052795..30053464 13..682 3335 99.9 Plus
Blast to na_te.dros performed on 2014-11-27 10:37:21 has no hits.

BS06813.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:32 Download gff for BS06813.complete
Subject Subject Range Query Range Percent Splice Strand
CG7946-RA 1..1428 17..1444 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:19 Download gff for BS06813.complete
Subject Subject Range Query Range Percent Splice Strand
CG7946-RA 277..1714 8..1445 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:19:36 Download gff for BS06813.complete
Subject Subject Range Query Range Percent Splice Strand
CG7946-RA 286..1711 17..1442 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:32 Download gff for BS06813.complete
Subject Subject Range Query Range Percent Splice Strand
CG7946-RA 277..1714 8..1445 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:37 Download gff for BS06813.complete
Subject Subject Range Query Range Percent Splice Strand
CG7946-RA 286..1711 17..1442 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:37 Download gff for BS06813.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30052799..30053464 17..682 100 -> Plus
3R 30053544..30054303 683..1442 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:19:36 Download gff for BS06813.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25878521..25879186 17..682 100 -> Plus
arm_3R 25879266..25880025 683..1442 100   Plus

BS06813.pep Sequence

Translation from 16 to 1443

> BS06813.pep
MGKEKAAASYSIGDLVFAKVKGYPPWPAKITKSNNNKKYNVYFYGTGETA
NIKLEDLFPYASNKERFATEKIMKRAKFIEAIDQIESALRGEDSAPIDLL
DGAEPVAPPTTGDGVKTEEPKPEPGPEPATAAPVAAAAEKPKKSGTRKTK
APPRHVDGDSEAGAELAPPPAKRRVPTEGLATAAAIPAAPAAATPTSSKK
SVKKSKPTAAVTPIQKRSRPVNNIRNEMLMVYMPTAKCLGIVINYKKPES
FESAAAEEAWMENARKEALELKLKLESGQINPESMPDRIVVEPTRSEIPK
QEALRFIEELIEHEDALFMERDFIQLSQQLRECLGLRRANVGKCLEILEQ
FKEVEFTKLMLLRNPECVDIMRRLRRYVGNLELWKMDLSDEVEFKERAQT
IRKVSSGIYDGFKSLFNPEPESEDNFWIDFCEKVKIYKTYTKNINENLRV
GMNERGYNSLVLAKEAAASAGSAPQ*

BS06813.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7946-PB 475 CG7946-PB 1..475 1..475 2440 100 Plus
CG7946-PA 475 CG7946-PA 1..475 1..475 2440 100 Plus