Clone BS06814 Report

Search the DGRC for BS06814

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:68
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptRpS12-RB
Protein status:BS06814.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06814.3prime Sequence

450 bp (449 high quality bases) assembled on 2005-12-04

> BS06814.3prime
ATGGTCTAGAAAGCTTTTAGCTGTTCTGCCTGAGATGGTCCTTAACCACG
TCCAAAGCGGGTGTCTCCTCACCGAAATCCTTGATCACGACCACGGAGCA
GCCGCACACCTTGCGGGGCTTGCCCTCCTTGTCGATCTTGCACAGACCGG
ACCATTCGCCCAGCTTCTTGTGCGAGTCCACGCGGATAAGGGGGATCTGG
TGCTCGTTGCACAGGGCGGTAACCAGCTTCTTGTAGTTGGGCTCGTCGAA
GGACTCGGCTAGGATGCACAGAACAGCCTGACGCTTGTCCAGGGCCTTGC
AGGCCTGGTGGATGCCATGGACGAGTCCATCGGCGATCAGGGACTTCTTC
AAGACCTCCTGGAGGGCAGTGTTAATGTCCATGGCGCCATCGAGCACAGG
GGCAGCGGAGGGAACATCAACATCAACGTCGGCCATGTCGACTGATAACT

BS06814.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG11271-PB 420 RpS12-RB 1..420 436..17 2100 100 Minus
RpS12-PC 420 RpS12-RC 1..420 436..17 2100 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:40:30
Subject Length Description Subject Range Query Range Score Percent Strand
RpS12-RB 613 CG11271-RB 69..489 436..16 2105 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:40:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13024366..13024638 288..16 1350 99.6 Minus
3L 28110227 3L 13023732..13023867 419..284 680 100 Minus
Blast to na_te.dros performed on 2015-02-03 12:40:27 has no hits.

BS06814.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:50 Download gff for BS06814.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS12-PF 1..420 17..436 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:36:00 Download gff for BS06814.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS12-PC 1..420 17..436 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:52:37 Download gff for BS06814.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS12-RB 62..494 12..444 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:43:29 Download gff for BS06814.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS12-RB 62..494 12..444 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:43:29 Download gff for BS06814.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 13023732..13023866 285..419 100 -> Minus
3L 13024370..13024643 12..284 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:52:37 Download gff for BS06814.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13016832..13016966 285..419 100 -> Minus
arm_3L 13017470..13017743 12..284 99   Minus

BS06814.5prime Sequence

450 bp (449 high quality bases) assembled on 2005-12-04

> BS06814.5prime
GAAGTTATCAGTCGACATGGCCGACGTTGATGTTGATGTTCCCTCCGCTG
CCCCTGTGCTCGATGGCGCCATGGACATTAACACTGCCCTCCAGGAGGTC
TTGAAGAAGTCCCTGATCGCCGATGGACTCGTCCATGGCATCCACCAGGC
CTGCAAGGCCCTGGACAAGCGTCAGGCTGTTCTGTGCATCCTAGCCGAGT
CCTTCGACGAGCCCAACTACAAGAAGCTGGTTACCGCCCTGTGCAACGAG
CACCAGATCCCCCTTATCCGCGTGGACTCGCACAAGAAGCTGGGCGAATG
GTCCGGTCTGTGCAAGATCGACAAGGAGGGCAAGCCCCGCAAGGTGTGCG
GCTGCTCCGTGGTCGTGATCAAGGATTTCGGTGAGGAGACACCCGCTTTG
GACGTGGTTAAGGACCATCTCAGGCAGAACAGCTAAAAGCTTTCTAGACC

BS06814.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG11271-PB 420 RpS12-RB 1..420 17..436 2100 100 Plus
RpS12-PC 420 RpS12-RC 1..420 17..436 2100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
RpS12-RB 613 CG11271-RB 69..489 17..437 2105 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:51:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13024366..13024638 165..437 1350 99.6 Plus
3L 28110227 3L 13023732..13023867 34..169 680 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:52:00 has no hits.

BS06814.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:51 Download gff for BS06814.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS12-PF 1..420 17..436 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:36:01 Download gff for BS06814.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS12-PC 1..420 17..436 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:36:50 Download gff for BS06814.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS12-RB 62..494 9..441 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:04 Download gff for BS06814.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS12-RB 62..494 9..441 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:31:04 Download gff for BS06814.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13023732..13023866 34..168 100 -> Plus
3L 13024370..13024643 169..441 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:36:50 Download gff for BS06814.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13016832..13016966 34..168 100 -> Plus
arm_3L 13017470..13017743 169..441 99   Plus

BS06814.complete Sequence

452 bp (452 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635630

> BS06814.complete
GAAGTTATCAGTCGACATGGCCGACGTTGATGTTGATGTTCCCTCCGCTG
CCCCTGTGCTCGATGGCGCCATGGACATTAACACTGCCCTCCAGGAGGTC
TTGAAGAAGTCCCTGATCGCCGATGGACTCGTCCATGGCATCCACCAGGC
CTGCAAGGCCCTGGACAAGCGTCAGGCTGTTCTGTGCATCCTAGCCGAGT
CCTTCGACGAGCCCAACTACAAGAAGCTGGTTACCGCCCTGTGCAACGAG
CACCAGATCCCCCTTATCCGCGTGGACTCGCACAAGAAGCTGGGCGAATG
GTCCGGTCTGTGCAAGATCGACAAGGAGGGCAAGCCCCGCAAGGTGTGCG
GCTGCTCCGTGGTCGTGATCAAGGATTTCGGTGAGGAGACACCCGCTTTG
GACGTGGTTAAGGACCATCTCAGGCAGAACAGCTAAAAGCTTTCTAGACC
AT

BS06814.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:05:13
Subject Length Description Subject Range Query Range Score Percent Strand
RpS12-RB 420 CG11271-PB 1..420 17..436 2100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
RpS12-RB 613 CG11271-RB 69..489 17..437 2105 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13024366..13024638 165..437 1350 99.6 Plus
3L 28110227 3L 13023732..13023867 34..169 680 100 Plus
Blast to na_te.dros performed on 2014-11-27 17:05:12 has no hits.

BS06814.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:09 Download gff for BS06814.complete
Subject Subject Range Query Range Percent Splice Strand
RpS12-RC 1..420 17..436 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:25 Download gff for BS06814.complete
Subject Subject Range Query Range Percent Splice Strand
RpS12-RB 45..477 9..441 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:04 Download gff for BS06814.complete
Subject Subject Range Query Range Percent Splice Strand
RpS12-RB 69..486 17..434 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:09 Download gff for BS06814.complete
Subject Subject Range Query Range Percent Splice Strand
RpS12-RB 45..477 9..441 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:20 Download gff for BS06814.complete
Subject Subject Range Query Range Percent Splice Strand
RpS12-RB 69..486 17..434 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:34:20 Download gff for BS06814.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13023509..13023525 17..33 100 -> Plus
3L 13023732..13023866 34..168 100 -> Plus
3L 13024370..13024635 169..434 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:04 Download gff for BS06814.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13016609..13016625 17..33 100 -> Plus
arm_3L 13016832..13016966 34..168 100 -> Plus
arm_3L 13017470..13017735 169..434 100   Plus

BS06814.pep Sequence

Translation from 16 to 435

> BS06814.pep
MADVDVDVPSAAPVLDGAMDINTALQEVLKKSLIADGLVHGIHQACKALD
KRQAVLCILAESFDEPNYKKLVTALCNEHQIPLIRVDSHKKLGEWSGLCK
IDKEGKPRKVCGCSVVVIKDFGEETPALDVVKDHLRQNS*

BS06814.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
RpS12-PB 139 CG11271-PB 1..139 1..139 724 100 Plus