Clone Sequence Records
BS06814.3prime Sequence
450 bp (449 high quality bases) assembled on 2005-12-04
> BS06814.3prime
ATGGTCTAGAAAGCTTTTAGCTGTTCTGCCTGAGATGGTCCTTAACCACG
TCCAAAGCGGGTGTCTCCTCACCGAAATCCTTGATCACGACCACGGAGCA
GCCGCACACCTTGCGGGGCTTGCCCTCCTTGTCGATCTTGCACAGACCGG
ACCATTCGCCCAGCTTCTTGTGCGAGTCCACGCGGATAAGGGGGATCTGG
TGCTCGTTGCACAGGGCGGTAACCAGCTTCTTGTAGTTGGGCTCGTCGAA
GGACTCGGCTAGGATGCACAGAACAGCCTGACGCTTGTCCAGGGCCTTGC
AGGCCTGGTGGATGCCATGGACGAGTCCATCGGCGATCAGGGACTTCTTC
AAGACCTCCTGGAGGGCAGTGTTAATGTCCATGGCGCCATCGAGCACAGG
GGCAGCGGAGGGAACATCAACATCAACGTCGGCCATGTCGACTGATAACT
BS06814.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11271-PB | 420 | RpS12-RB | 1..420 | 436..17 | 2100 | 100 | Minus |
RpS12-PC | 420 | RpS12-RC | 1..420 | 436..17 | 2100 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:40:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS12-RB | 613 | CG11271-RB | 69..489 | 436..16 | 2105 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:40:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13024366..13024638 | 288..16 | 1350 | 99.6 | Minus |
3L | 28110227 | 3L | 13023732..13023867 | 419..284 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 12:40:27 has no hits.
BS06814.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:50 Download gff for
BS06814.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS12-PF | 1..420 | 17..436 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:36:00 Download gff for
BS06814.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS12-PC | 1..420 | 17..436 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:52:37 Download gff for
BS06814.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS12-RB | 62..494 | 12..444 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:43:29 Download gff for
BS06814.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS12-RB | 62..494 | 12..444 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:43:29 Download gff for
BS06814.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13023732..13023866 | 285..419 | 100 | -> | Minus |
3L | 13024370..13024643 | 12..284 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:52:37 Download gff for
BS06814.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13016832..13016966 | 285..419 | 100 | -> | Minus |
arm_3L | 13017470..13017743 | 12..284 | 99 | | Minus |
BS06814.5prime Sequence
450 bp (449 high quality bases) assembled on 2005-12-04
> BS06814.5prime
GAAGTTATCAGTCGACATGGCCGACGTTGATGTTGATGTTCCCTCCGCTG
CCCCTGTGCTCGATGGCGCCATGGACATTAACACTGCCCTCCAGGAGGTC
TTGAAGAAGTCCCTGATCGCCGATGGACTCGTCCATGGCATCCACCAGGC
CTGCAAGGCCCTGGACAAGCGTCAGGCTGTTCTGTGCATCCTAGCCGAGT
CCTTCGACGAGCCCAACTACAAGAAGCTGGTTACCGCCCTGTGCAACGAG
CACCAGATCCCCCTTATCCGCGTGGACTCGCACAAGAAGCTGGGCGAATG
GTCCGGTCTGTGCAAGATCGACAAGGAGGGCAAGCCCCGCAAGGTGTGCG
GCTGCTCCGTGGTCGTGATCAAGGATTTCGGTGAGGAGACACCCGCTTTG
GACGTGGTTAAGGACCATCTCAGGCAGAACAGCTAAAAGCTTTCTAGACC
BS06814.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11271-PB | 420 | RpS12-RB | 1..420 | 17..436 | 2100 | 100 | Plus |
RpS12-PC | 420 | RpS12-RC | 1..420 | 17..436 | 2100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS12-RB | 613 | CG11271-RB | 69..489 | 17..437 | 2105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:51:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13024366..13024638 | 165..437 | 1350 | 99.6 | Plus |
3L | 28110227 | 3L | 13023732..13023867 | 34..169 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:52:00 has no hits.
BS06814.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:51 Download gff for
BS06814.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS12-PF | 1..420 | 17..436 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:36:01 Download gff for
BS06814.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS12-PC | 1..420 | 17..436 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:36:50 Download gff for
BS06814.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS12-RB | 62..494 | 9..441 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:04 Download gff for
BS06814.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS12-RB | 62..494 | 9..441 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:31:04 Download gff for
BS06814.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13023732..13023866 | 34..168 | 100 | -> | Plus |
3L | 13024370..13024643 | 169..441 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:36:50 Download gff for
BS06814.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13016832..13016966 | 34..168 | 100 | -> | Plus |
arm_3L | 13017470..13017743 | 169..441 | 99 | | Plus |
BS06814.complete Sequence
452 bp (452 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635630
> BS06814.complete
GAAGTTATCAGTCGACATGGCCGACGTTGATGTTGATGTTCCCTCCGCTG
CCCCTGTGCTCGATGGCGCCATGGACATTAACACTGCCCTCCAGGAGGTC
TTGAAGAAGTCCCTGATCGCCGATGGACTCGTCCATGGCATCCACCAGGC
CTGCAAGGCCCTGGACAAGCGTCAGGCTGTTCTGTGCATCCTAGCCGAGT
CCTTCGACGAGCCCAACTACAAGAAGCTGGTTACCGCCCTGTGCAACGAG
CACCAGATCCCCCTTATCCGCGTGGACTCGCACAAGAAGCTGGGCGAATG
GTCCGGTCTGTGCAAGATCGACAAGGAGGGCAAGCCCCGCAAGGTGTGCG
GCTGCTCCGTGGTCGTGATCAAGGATTTCGGTGAGGAGACACCCGCTTTG
GACGTGGTTAAGGACCATCTCAGGCAGAACAGCTAAAAGCTTTCTAGACC
AT
BS06814.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:05:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS12-RB | 420 | CG11271-PB | 1..420 | 17..436 | 2100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:05:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS12-RB | 613 | CG11271-RB | 69..489 | 17..437 | 2105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:05:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13024366..13024638 | 165..437 | 1350 | 99.6 | Plus |
3L | 28110227 | 3L | 13023732..13023867 | 34..169 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 17:05:12 has no hits.
BS06814.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:09 Download gff for
BS06814.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS12-RC | 1..420 | 17..436 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:25 Download gff for
BS06814.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS12-RB | 45..477 | 9..441 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:04 Download gff for
BS06814.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS12-RB | 69..486 | 17..434 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:09 Download gff for
BS06814.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS12-RB | 45..477 | 9..441 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:20 Download gff for
BS06814.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS12-RB | 69..486 | 17..434 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:34:20 Download gff for
BS06814.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13023509..13023525 | 17..33 | 100 | -> | Plus |
3L | 13023732..13023866 | 34..168 | 100 | -> | Plus |
3L | 13024370..13024635 | 169..434 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:04 Download gff for
BS06814.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13016609..13016625 | 17..33 | 100 | -> | Plus |
arm_3L | 13016832..13016966 | 34..168 | 100 | -> | Plus |
arm_3L | 13017470..13017735 | 169..434 | 100 | | Plus |
BS06814.pep Sequence
Translation from 16 to 435
> BS06814.pep
MADVDVDVPSAAPVLDGAMDINTALQEVLKKSLIADGLVHGIHQACKALD
KRQAVLCILAESFDEPNYKKLVTALCNEHQIPLIRVDSHKKLGEWSGLCK
IDKEGKPRKVCGCSVVVIKDFGEETPALDVVKDHLRQNS*
BS06814.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:51:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS12-PB | 139 | CG11271-PB | 1..139 | 1..139 | 724 | 100 | Plus |