Clone Sequence Records
BS06817.3prime Sequence
951 bp (900 high quality bases) assembled on 2005-12-04
> BS06817.3prime
ATGGTCTAGAAAGCTTCTAAGGCTTGGCAGTCTGAGCCTGGCCAGGATTT
ATGCCACTGGCCGTGGAAGTGGTAGCCTCCGTTTCCTCACCGGGCAGCGT
TTTGTTGAGTATCTGGTGGAAGTGCTCCCCGAACACGGCGTGGTTGTAGG
ACACCAGACGACGGAACGAGGCGATAAATGCAACCAGCTCCTCTTGGTAG
TCCGCGAATCCTGAGGGCGGCGGCGGAATGCTGCCATTGGAGCGCAGTGT
TACGCGCACATAGCCATCCAATCGTTTGGCCATCAAACTGGGCACCGGCG
ACGTCTTGTTGGCCAGCTTAAGCACCTGGTTCTTGAGCGCCGCCTGGTCG
GCATCACTCAGCGCAGGCAAGTTCTCCTGCTCCAGGGCCTTGTTCACAAA
GGAGCGAATCTGCTCGTAGCAGCTCTCAATGGTAGAGGCCACTTGGTCCT
GGTTCTTGATGTCCTGCACAATGATGTCCAGCTGCTGGGCCAGCTTGATG
CGGTTCTCGCGGCGCTGCGATATGATAGGCATGCCCTGGGCCACCGAGAT
GAGCGAGGCGCACAGGATCAAGCGCTGGGCTCGCCAACTTAGGCCGGCGA
AGCGCTCTTTGTCGATGCGCAACAGCTCCGGGAACTCCTTGTCGGCCGGA
TAGTCAATCAGCTGCATGTAGGCATTGTAAATGGTCTCATCATCGCTGCT
ACCGGACCGGTGACGCTGCAGCCAATCCTCAGTGGCCGGAAAACCAACAT
TTCCATGGAACTCGCGCAAGTACTTGCTAAACTTCTCCTTCTCATACTGC
ACCGAATTGGCAGCGATTTCGGTGCGCGCCAGTCGAAGCATAAAGTTGGC
CATATCCAGCTTCATCAGCGTCATCAGCTCGAGAATGCAGCGAAACGTGT
CCACCACATCGTCGATCTTGCGCAGAGCGGCCACTGCTTCGTCCCTAGCT
G
BS06817.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16721-PA | 1485 | CG16721-RA | 551..1485 | 951..17 | 4675 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:45:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16721-RC | 2321 | CG16721-RC | 785..1719 | 951..17 | 4675 | 100 | Minus |
CG16721-RA | 2546 | CG16721-RA | 1010..1944 | 951..17 | 4675 | 100 | Minus |
CG16721-RB | 2442 | CG16721-RB | 906..1840 | 951..17 | 4675 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:45:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5881934..5882235 | 748..447 | 1510 | 100 | Minus |
X | 23542271 | X | 5882526..5882789 | 280..17 | 1320 | 100 | Minus |
X | 23542271 | X | 5881667..5881874 | 951..744 | 1025 | 99.5 | Minus |
X | 23542271 | X | 5882297..5882463 | 446..280 | 835 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 20:45:55 has no hits.
BS06817.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:56 Download gff for
BS06817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16721-PA | 551..1485 | 17..951 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:36:08 Download gff for
BS06817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16721-PA | 551..1485 | 17..951 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:05:40 Download gff for
BS06817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16721-RB | 906..1840 | 17..951 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:18:08 Download gff for
BS06817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16721-RB | 906..1840 | 17..951 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:18:08 Download gff for
BS06817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5881667..5881870 | 748..951 | 100 | -> | Minus |
X | 5881935..5882235 | 447..747 | 100 | -> | Minus |
X | 5882297..5882463 | 280..446 | 100 | -> | Minus |
X | 5882527..5882789 | 17..279 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:05:40 Download gff for
BS06817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5775700..5775903 | 748..951 | 100 | -> | Minus |
arm_X | 5775968..5776268 | 447..747 | 100 | -> | Minus |
arm_X | 5776330..5776496 | 280..446 | 100 | -> | Minus |
arm_X | 5776560..5776822 | 17..279 | 100 | | Minus |
BS06817.5prime Sequence
904 bp (839 high quality bases) assembled on 2005-12-04
> BS06817.5prime
GAAGTTATCAGTCGACATGGATGCCCAGGAGAATAGGAGTGAACAGTCGG
GACAATCGGGCGACCACGAAGAGCACGAGGAGCGCCGGATCCGTACGGAC
AGCGAGAGTTCCGTGGAAAGCATGACGCGTTTCGTGCTGCCCAGCTTGGA
TGGTACTCCGCCGAAAATTGTGACCCTGGACGAAGTGTCCAGCATGTTCA
AGAATTTGCGCAACATGGAGCTGGCCCACGAGATAGCCCTCAATCCGGAC
TTCAAGCTGCAGAAGTACGAGCCGCCCTCGGATAGTTTGGAGGGCGCCAT
CAAGAAGATGGTGCACAAGGCCTTTTGGGATCTGCTGCGTGTGCAGCTGG
ACCGCCAGCCGCCATCGTATGATCAGGCCATCCGGCTGCTGGCTGAGATC
AAGGAGTGCTTCCCGCAGCTGCTGTCGCCCAACAACGAACGTGCCCTGGC
CCACATCAACGAGGTGCTGGATGACTCCGTCATCCGCCAGCAAGCGGAGC
GGGGTACCCTGGACTTTCGAGCATATGCCAACTTTGTGATCAACATCCTG
TCGCGATCCTGTTCGCCAGCTAGGGACGAAGCAGTGGCCGCTCTGCGCAA
GATCGACGATGTGGTGGACACGTTTCGCTGCATTCTCGAGCTGATGACGC
TGATGAAGCTGGATATGGCCAACTTTATGCTTCGACTGGCGCGCACCGAA
ATCGCTGCCAATTCGGTGCAGTATGAGAAGGAGAAGTTTAGCAAGTACTT
GCGCGAGTTCCATGGAAATGTTGGTTTTCCGGCCACTGAGGATTGGCTGC
AGCGTCACCGGTCCGGTAGCAGCGATGATGAGACCATTTACAATGCCTAC
ATGCAGCTGATTGACTATCCGGCCGACNAGGAGTTCCCGGAGCTGTTGCG
CATC
BS06817.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16721-PA | 1485 | CG16721-RA | 1..888 | 17..904 | 4421 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:21:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16721-RC | 2321 | CG16721-RC | 235..1122 | 17..904 | 4429 | 99.9 | Plus |
CG16721-RA | 2546 | CG16721-RA | 460..1347 | 17..904 | 4429 | 99.9 | Plus |
CG16721-RB | 2442 | CG16721-RB | 356..1243 | 17..904 | 4429 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:21:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5881384..5881874 | 284..774 | 2440 | 99.8 | Plus |
X | 23542271 | X | 5881053..5881321 | 17..285 | 1345 | 100 | Plus |
X | 23542271 | X | 5881934..5882068 | 770..904 | 664 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-04 02:21:12 has no hits.
BS06817.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:57 Download gff for
BS06817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16721-PA | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:36:10 Download gff for
BS06817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16721-PA | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:49:35 Download gff for
BS06817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16721-RB | 356..1243 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:35:55 Download gff for
BS06817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16721-RB | 356..1243 | 17..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:35:55 Download gff for
BS06817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5881053..5881321 | 17..285 | 100 | -> | Plus |
X | 5881386..5881870 | 286..770 | 100 | -> | Plus |
X | 5881935..5882068 | 771..904 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:49:35 Download gff for
BS06817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5775086..5775354 | 17..285 | 100 | -> | Plus |
arm_X | 5775419..5775903 | 286..770 | 100 | -> | Plus |
arm_X | 5775968..5776101 | 771..904 | 99 | | Plus |
BS06817.complete Sequence
1517 bp (1517 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635631
> BS06817.complete
GAAGTTATCAGTCGACATGGATGCCCAGGAGAATAGGAGTGAACAGTCGG
GACAATCGGGCGACCACGAAGAGCACGAGGAGCGCCGGATCCGTACGGAC
AGCGAGAGTTCCGTGGAAAGCATGACGCGTTTCGTGCTGCCCAGCTTGGA
TGGTACTCCGCCGAAAATTGTGACCCTGGACGAAGTGTCCAGCATGTTCA
AGAATTTGCGCAACATGGAGCTGGCCCACGAGATAGCCCTCAATCCGGAC
TTCAAGCTGCAGAAGTACGAGCCGCCCTCGGATAGTTTGGAGGGCGCCAT
CAAGAAGATGGTGCACAAGGCCTTTTGGGATCTGCTGCGTGTGCAGCTGG
ACCGCCAGCCGCCATCGTATGATCAGGCCATCCGGCTGCTGGCTGAGATC
AAGGAGTGCTTCCCGCAGCTGCTGTCGCCCAACAACGAACGTGCCCTGGC
CCACATCAACGAGGTGCTGGATGACTCCGTCATCCGCCAGCAAGCGGAGC
GGGGTACCCTGGACTTTCGAGCATATGCCAACTTTGTGATCAACATCCTG
TCGCGATCCTGTTCGCCAGCTAGGGACGAAGCAGTGGCCGCTCTGCGCAA
GATCGACGATGTGGTGGACACGTTTCGCTGCATTCTCGAGCTGATGACGC
TGATGAAGCTGGATATGGCCAACTTTATGCTTCGACTGGCGCGCACCGAA
ATCGCTGCCAATTCGGTGCAGTATGAGAAGGAGAAGTTTAGCAAGTACTT
GCGCGAGTTCCATGGAAATGTTGGTTTTCCGGCCACTGAGGATTGGCTGC
AGCGTCACCGGTCCGGTAGCAGCGATGATGAGACCATTTACAATGCCTAC
ATGCAGCTGATTGACTATCCGGCCGACAAGGAGTTCCCGGAGCTGTTGCG
CATCGACAAAGAGCGCTTCGCCGGCCTAAGTTGGCGAGCCCAGCGCTTGA
TCCTGTGCGCCTCGCTCATCTCGGTGGCCCAGGGCATGCCTATCATATCG
CAGCGCCGCGAGAACCGCATCAAGCTGGCCCAGCAGCTGGACATCATTGT
GCAGGACATCAAGAACCAGGACCAAGTGGCCTCTACCATTGAGAGCTGCT
ACGAGCAGATTCGCTCCTTTGTGAACAAGGCCCTGGAGCAGGAGAACTTG
CCTGCGCTGAGTGATGCCGACCAGGCGGCGCTCAAGAACCAGGTGCTTAA
GCTGGCCAACAAGACGTCGCCGGTGCCCAGTTTGATGGCCAAACGATTGG
ATGGCTATGTGCGCGTAACACTGCGCTCCAATGGCAGCATTCCGCCGCCG
CCCTCAGGATTCGCGGACTACCAAGAGGAGCTGGTTGCATTTATCGCCTC
GTTCCGTCGTCTGGTGTCCTACAACCACGCCGTGTTCGGGGAGCACTTCC
ACCAGATACTCAACAAAACGCTGCCCGGTGAGGAAACGGAGGCTACCACT
TCCACGGCCAGTGGCATAAATCCTGGCCAGGCTCAGACTGCCAAGCCTTA
GAAGCTTTCTAGACCAT
BS06817.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:20:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16721-RC | 1485 | CG16721-PC | 1..1485 | 17..1501 | 7425 | 100 | Plus |
CG16721-RA | 1485 | CG16721-PA | 1..1485 | 17..1501 | 7425 | 100 | Plus |
CG16721-RB | 1485 | CG16721-PB | 1..1485 | 17..1501 | 7425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:20:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16721-RC | 2321 | CG16721-RC | 235..1719 | 17..1501 | 7425 | 100 | Plus |
CG16721-RA | 2546 | CG16721-RA | 460..1944 | 17..1501 | 7425 | 100 | Plus |
CG16721-RB | 2442 | CG16721-RB | 356..1840 | 17..1501 | 7425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:20:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5881384..5881874 | 284..774 | 2440 | 99.8 | Plus |
X | 23542271 | X | 5881934..5882235 | 770..1071 | 1510 | 100 | Plus |
X | 23542271 | X | 5881053..5881321 | 17..285 | 1345 | 100 | Plus |
X | 23542271 | X | 5882526..5882789 | 1238..1501 | 1320 | 100 | Plus |
X | 23542271 | X | 5882297..5882463 | 1072..1238 | 835 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:20:23 has no hits.
BS06817.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:24 Download gff for
BS06817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16721-RA | 1..1485 | 17..1501 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:08 Download gff for
BS06817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16721-RA | 471..1955 | 17..1501 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:33 Download gff for
BS06817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16721-RB | 356..1840 | 17..1501 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:24 Download gff for
BS06817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16721-RA | 471..1955 | 17..1501 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:17 Download gff for
BS06817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16721-RB | 356..1840 | 17..1501 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:17 Download gff for
BS06817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5881935..5882235 | 771..1071 | 100 | -> | Plus |
X | 5882297..5882463 | 1072..1238 | 100 | -> | Plus |
X | 5882527..5882789 | 1239..1501 | 100 | | Plus |
X | 5881053..5881321 | 17..285 | 100 | -> | Plus |
X | 5881386..5881870 | 286..770 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:33 Download gff for
BS06817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5775086..5775354 | 17..285 | 100 | -> | Plus |
arm_X | 5775419..5775903 | 286..770 | 100 | -> | Plus |
arm_X | 5775968..5776268 | 771..1071 | 100 | -> | Plus |
arm_X | 5776330..5776496 | 1072..1238 | 100 | -> | Plus |
arm_X | 5776560..5776822 | 1239..1501 | 100 | | Plus |
BS06817.pep Sequence
Translation from 16 to 1500
> BS06817.pep
MDAQENRSEQSGQSGDHEEHEERRIRTDSESSVESMTRFVLPSLDGTPPK
IVTLDEVSSMFKNLRNMELAHEIALNPDFKLQKYEPPSDSLEGAIKKMVH
KAFWDLLRVQLDRQPPSYDQAIRLLAEIKECFPQLLSPNNERALAHINEV
LDDSVIRQQAERGTLDFRAYANFVINILSRSCSPARDEAVAALRKIDDVV
DTFRCILELMTLMKLDMANFMLRLARTEIAANSVQYEKEKFSKYLREFHG
NVGFPATEDWLQRHRSGSSDDETIYNAYMQLIDYPADKEFPELLRIDKER
FAGLSWRAQRLILCASLISVAQGMPIISQRRENRIKLAQQLDIIVQDIKN
QDQVASTIESCYEQIRSFVNKALEQENLPALSDADQAALKNQVLKLANKT
SPVPSLMAKRLDGYVRVTLRSNGSIPPPPSGFADYQEELVAFIASFRRLV
SYNHAVFGEHFHQILNKTLPGEETEATTSTASGINPGQAQTAKP*
BS06817.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16721-PC | 494 | CG16721-PC | 1..494 | 1..494 | 2514 | 100 | Plus |
CG16721-PA | 494 | CG16721-PA | 1..494 | 1..494 | 2514 | 100 | Plus |
CG16721-PB | 494 | CG16721-PB | 1..494 | 1..494 | 2514 | 100 | Plus |