Clone BS06817 Report

Search the DGRC for BS06817

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:68
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG16721-RA
Protein status:BS06817.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06817.3prime Sequence

951 bp (900 high quality bases) assembled on 2005-12-04

> BS06817.3prime
ATGGTCTAGAAAGCTTCTAAGGCTTGGCAGTCTGAGCCTGGCCAGGATTT
ATGCCACTGGCCGTGGAAGTGGTAGCCTCCGTTTCCTCACCGGGCAGCGT
TTTGTTGAGTATCTGGTGGAAGTGCTCCCCGAACACGGCGTGGTTGTAGG
ACACCAGACGACGGAACGAGGCGATAAATGCAACCAGCTCCTCTTGGTAG
TCCGCGAATCCTGAGGGCGGCGGCGGAATGCTGCCATTGGAGCGCAGTGT
TACGCGCACATAGCCATCCAATCGTTTGGCCATCAAACTGGGCACCGGCG
ACGTCTTGTTGGCCAGCTTAAGCACCTGGTTCTTGAGCGCCGCCTGGTCG
GCATCACTCAGCGCAGGCAAGTTCTCCTGCTCCAGGGCCTTGTTCACAAA
GGAGCGAATCTGCTCGTAGCAGCTCTCAATGGTAGAGGCCACTTGGTCCT
GGTTCTTGATGTCCTGCACAATGATGTCCAGCTGCTGGGCCAGCTTGATG
CGGTTCTCGCGGCGCTGCGATATGATAGGCATGCCCTGGGCCACCGAGAT
GAGCGAGGCGCACAGGATCAAGCGCTGGGCTCGCCAACTTAGGCCGGCGA
AGCGCTCTTTGTCGATGCGCAACAGCTCCGGGAACTCCTTGTCGGCCGGA
TAGTCAATCAGCTGCATGTAGGCATTGTAAATGGTCTCATCATCGCTGCT
ACCGGACCGGTGACGCTGCAGCCAATCCTCAGTGGCCGGAAAACCAACAT
TTCCATGGAACTCGCGCAAGTACTTGCTAAACTTCTCCTTCTCATACTGC
ACCGAATTGGCAGCGATTTCGGTGCGCGCCAGTCGAAGCATAAAGTTGGC
CATATCCAGCTTCATCAGCGTCATCAGCTCGAGAATGCAGCGAAACGTGT
CCACCACATCGTCGATCTTGCGCAGAGCGGCCACTGCTTCGTCCCTAGCT
G

BS06817.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG16721-PA 1485 CG16721-RA 551..1485 951..17 4675 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG16721-RC 2321 CG16721-RC 785..1719 951..17 4675 100 Minus
CG16721-RA 2546 CG16721-RA 1010..1944 951..17 4675 100 Minus
CG16721-RB 2442 CG16721-RB 906..1840 951..17 4675 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:45:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5881934..5882235 748..447 1510 100 Minus
X 23542271 X 5882526..5882789 280..17 1320 100 Minus
X 23542271 X 5881667..5881874 951..744 1025 99.5 Minus
X 23542271 X 5882297..5882463 446..280 835 100 Minus
Blast to na_te.dros performed on 2015-02-02 20:45:55 has no hits.

BS06817.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:56 Download gff for BS06817.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16721-PA 551..1485 17..951 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:36:08 Download gff for BS06817.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16721-PA 551..1485 17..951 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:05:40 Download gff for BS06817.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16721-RB 906..1840 17..951 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:18:08 Download gff for BS06817.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16721-RB 906..1840 17..951 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:18:08 Download gff for BS06817.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5881667..5881870 748..951 100 -> Minus
X 5881935..5882235 447..747 100 -> Minus
X 5882297..5882463 280..446 100 -> Minus
X 5882527..5882789 17..279 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:05:40 Download gff for BS06817.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5775700..5775903 748..951 100 -> Minus
arm_X 5775968..5776268 447..747 100 -> Minus
arm_X 5776330..5776496 280..446 100 -> Minus
arm_X 5776560..5776822 17..279 100   Minus

BS06817.5prime Sequence

904 bp (839 high quality bases) assembled on 2005-12-04

> BS06817.5prime
GAAGTTATCAGTCGACATGGATGCCCAGGAGAATAGGAGTGAACAGTCGG
GACAATCGGGCGACCACGAAGAGCACGAGGAGCGCCGGATCCGTACGGAC
AGCGAGAGTTCCGTGGAAAGCATGACGCGTTTCGTGCTGCCCAGCTTGGA
TGGTACTCCGCCGAAAATTGTGACCCTGGACGAAGTGTCCAGCATGTTCA
AGAATTTGCGCAACATGGAGCTGGCCCACGAGATAGCCCTCAATCCGGAC
TTCAAGCTGCAGAAGTACGAGCCGCCCTCGGATAGTTTGGAGGGCGCCAT
CAAGAAGATGGTGCACAAGGCCTTTTGGGATCTGCTGCGTGTGCAGCTGG
ACCGCCAGCCGCCATCGTATGATCAGGCCATCCGGCTGCTGGCTGAGATC
AAGGAGTGCTTCCCGCAGCTGCTGTCGCCCAACAACGAACGTGCCCTGGC
CCACATCAACGAGGTGCTGGATGACTCCGTCATCCGCCAGCAAGCGGAGC
GGGGTACCCTGGACTTTCGAGCATATGCCAACTTTGTGATCAACATCCTG
TCGCGATCCTGTTCGCCAGCTAGGGACGAAGCAGTGGCCGCTCTGCGCAA
GATCGACGATGTGGTGGACACGTTTCGCTGCATTCTCGAGCTGATGACGC
TGATGAAGCTGGATATGGCCAACTTTATGCTTCGACTGGCGCGCACCGAA
ATCGCTGCCAATTCGGTGCAGTATGAGAAGGAGAAGTTTAGCAAGTACTT
GCGCGAGTTCCATGGAAATGTTGGTTTTCCGGCCACTGAGGATTGGCTGC
AGCGTCACCGGTCCGGTAGCAGCGATGATGAGACCATTTACAATGCCTAC
ATGCAGCTGATTGACTATCCGGCCGACNAGGAGTTCCCGGAGCTGTTGCG
CATC

BS06817.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG16721-PA 1485 CG16721-RA 1..888 17..904 4421 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:21:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG16721-RC 2321 CG16721-RC 235..1122 17..904 4429 99.9 Plus
CG16721-RA 2546 CG16721-RA 460..1347 17..904 4429 99.9 Plus
CG16721-RB 2442 CG16721-RB 356..1243 17..904 4429 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:21:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5881384..5881874 284..774 2440 99.8 Plus
X 23542271 X 5881053..5881321 17..285 1345 100 Plus
X 23542271 X 5881934..5882068 770..904 664 99.3 Plus
Blast to na_te.dros performed on 2015-02-04 02:21:12 has no hits.

BS06817.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:57 Download gff for BS06817.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16721-PA 1..888 17..904 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:36:10 Download gff for BS06817.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16721-PA 1..888 17..904 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:49:35 Download gff for BS06817.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16721-RB 356..1243 17..904 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:35:55 Download gff for BS06817.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16721-RB 356..1243 17..904 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:35:55 Download gff for BS06817.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5881053..5881321 17..285 100 -> Plus
X 5881386..5881870 286..770 100 -> Plus
X 5881935..5882068 771..904 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:49:35 Download gff for BS06817.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5775086..5775354 17..285 100 -> Plus
arm_X 5775419..5775903 286..770 100 -> Plus
arm_X 5775968..5776101 771..904 99   Plus

BS06817.complete Sequence

1517 bp (1517 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635631

> BS06817.complete
GAAGTTATCAGTCGACATGGATGCCCAGGAGAATAGGAGTGAACAGTCGG
GACAATCGGGCGACCACGAAGAGCACGAGGAGCGCCGGATCCGTACGGAC
AGCGAGAGTTCCGTGGAAAGCATGACGCGTTTCGTGCTGCCCAGCTTGGA
TGGTACTCCGCCGAAAATTGTGACCCTGGACGAAGTGTCCAGCATGTTCA
AGAATTTGCGCAACATGGAGCTGGCCCACGAGATAGCCCTCAATCCGGAC
TTCAAGCTGCAGAAGTACGAGCCGCCCTCGGATAGTTTGGAGGGCGCCAT
CAAGAAGATGGTGCACAAGGCCTTTTGGGATCTGCTGCGTGTGCAGCTGG
ACCGCCAGCCGCCATCGTATGATCAGGCCATCCGGCTGCTGGCTGAGATC
AAGGAGTGCTTCCCGCAGCTGCTGTCGCCCAACAACGAACGTGCCCTGGC
CCACATCAACGAGGTGCTGGATGACTCCGTCATCCGCCAGCAAGCGGAGC
GGGGTACCCTGGACTTTCGAGCATATGCCAACTTTGTGATCAACATCCTG
TCGCGATCCTGTTCGCCAGCTAGGGACGAAGCAGTGGCCGCTCTGCGCAA
GATCGACGATGTGGTGGACACGTTTCGCTGCATTCTCGAGCTGATGACGC
TGATGAAGCTGGATATGGCCAACTTTATGCTTCGACTGGCGCGCACCGAA
ATCGCTGCCAATTCGGTGCAGTATGAGAAGGAGAAGTTTAGCAAGTACTT
GCGCGAGTTCCATGGAAATGTTGGTTTTCCGGCCACTGAGGATTGGCTGC
AGCGTCACCGGTCCGGTAGCAGCGATGATGAGACCATTTACAATGCCTAC
ATGCAGCTGATTGACTATCCGGCCGACAAGGAGTTCCCGGAGCTGTTGCG
CATCGACAAAGAGCGCTTCGCCGGCCTAAGTTGGCGAGCCCAGCGCTTGA
TCCTGTGCGCCTCGCTCATCTCGGTGGCCCAGGGCATGCCTATCATATCG
CAGCGCCGCGAGAACCGCATCAAGCTGGCCCAGCAGCTGGACATCATTGT
GCAGGACATCAAGAACCAGGACCAAGTGGCCTCTACCATTGAGAGCTGCT
ACGAGCAGATTCGCTCCTTTGTGAACAAGGCCCTGGAGCAGGAGAACTTG
CCTGCGCTGAGTGATGCCGACCAGGCGGCGCTCAAGAACCAGGTGCTTAA
GCTGGCCAACAAGACGTCGCCGGTGCCCAGTTTGATGGCCAAACGATTGG
ATGGCTATGTGCGCGTAACACTGCGCTCCAATGGCAGCATTCCGCCGCCG
CCCTCAGGATTCGCGGACTACCAAGAGGAGCTGGTTGCATTTATCGCCTC
GTTCCGTCGTCTGGTGTCCTACAACCACGCCGTGTTCGGGGAGCACTTCC
ACCAGATACTCAACAAAACGCTGCCCGGTGAGGAAACGGAGGCTACCACT
TCCACGGCCAGTGGCATAAATCCTGGCCAGGCTCAGACTGCCAAGCCTTA
GAAGCTTTCTAGACCAT

BS06817.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:20:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG16721-RC 1485 CG16721-PC 1..1485 17..1501 7425 100 Plus
CG16721-RA 1485 CG16721-PA 1..1485 17..1501 7425 100 Plus
CG16721-RB 1485 CG16721-PB 1..1485 17..1501 7425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:20:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG16721-RC 2321 CG16721-RC 235..1719 17..1501 7425 100 Plus
CG16721-RA 2546 CG16721-RA 460..1944 17..1501 7425 100 Plus
CG16721-RB 2442 CG16721-RB 356..1840 17..1501 7425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:20:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5881384..5881874 284..774 2440 99.8 Plus
X 23542271 X 5881934..5882235 770..1071 1510 100 Plus
X 23542271 X 5881053..5881321 17..285 1345 100 Plus
X 23542271 X 5882526..5882789 1238..1501 1320 100 Plus
X 23542271 X 5882297..5882463 1072..1238 835 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:20:23 has no hits.

BS06817.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:24 Download gff for BS06817.complete
Subject Subject Range Query Range Percent Splice Strand
CG16721-RA 1..1485 17..1501 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:08 Download gff for BS06817.complete
Subject Subject Range Query Range Percent Splice Strand
CG16721-RA 471..1955 17..1501 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:33 Download gff for BS06817.complete
Subject Subject Range Query Range Percent Splice Strand
CG16721-RB 356..1840 17..1501 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:24 Download gff for BS06817.complete
Subject Subject Range Query Range Percent Splice Strand
CG16721-RA 471..1955 17..1501 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:17 Download gff for BS06817.complete
Subject Subject Range Query Range Percent Splice Strand
CG16721-RB 356..1840 17..1501 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:17 Download gff for BS06817.complete
Subject Subject Range Query Range Percent Splice Strand
X 5881935..5882235 771..1071 100 -> Plus
X 5882297..5882463 1072..1238 100 -> Plus
X 5882527..5882789 1239..1501 100   Plus
X 5881053..5881321 17..285 100 -> Plus
X 5881386..5881870 286..770 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:33 Download gff for BS06817.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5775086..5775354 17..285 100 -> Plus
arm_X 5775419..5775903 286..770 100 -> Plus
arm_X 5775968..5776268 771..1071 100 -> Plus
arm_X 5776330..5776496 1072..1238 100 -> Plus
arm_X 5776560..5776822 1239..1501 100   Plus

BS06817.pep Sequence

Translation from 16 to 1500

> BS06817.pep
MDAQENRSEQSGQSGDHEEHEERRIRTDSESSVESMTRFVLPSLDGTPPK
IVTLDEVSSMFKNLRNMELAHEIALNPDFKLQKYEPPSDSLEGAIKKMVH
KAFWDLLRVQLDRQPPSYDQAIRLLAEIKECFPQLLSPNNERALAHINEV
LDDSVIRQQAERGTLDFRAYANFVINILSRSCSPARDEAVAALRKIDDVV
DTFRCILELMTLMKLDMANFMLRLARTEIAANSVQYEKEKFSKYLREFHG
NVGFPATEDWLQRHRSGSSDDETIYNAYMQLIDYPADKEFPELLRIDKER
FAGLSWRAQRLILCASLISVAQGMPIISQRRENRIKLAQQLDIIVQDIKN
QDQVASTIESCYEQIRSFVNKALEQENLPALSDADQAALKNQVLKLANKT
SPVPSLMAKRLDGYVRVTLRSNGSIPPPPSGFADYQEELVAFIASFRRLV
SYNHAVFGEHFHQILNKTLPGEETEATTSTASGINPGQAQTAKP*

BS06817.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG16721-PC 494 CG16721-PC 1..494 1..494 2514 100 Plus
CG16721-PA 494 CG16721-PA 1..494 1..494 2514 100 Plus
CG16721-PB 494 CG16721-PB 1..494 1..494 2514 100 Plus