Clone BS06819 Report

Search the DGRC for BS06819

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:68
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptCG4662-RA
Protein status:BS06819.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06819.3prime Sequence

927 bp (786 high quality bases) assembled on 2005-12-04

> BS06819.3prime
ATGGTCTAGAAAGCTTTCAGTGCCAAAGCGCATCGCTGTCTATGAAGTAA
TCCAGGTGGCGGCACACCCGATGTCGCCAGGCGACAAACAGCGGATAATC
GGGCTCATCATAGGCGTCCAGAGCTTCGTTGTAATCAAAGAAACGACCAC
TTACTTTGAAGCCGCGATGCAGGCGATCCTTCATGATGGCTATGAACTCC
TTGTAGGACAGCAGGCCATCGCCATCCGCGTCGAAGATGGCGAACACGGT
ATCGATCAAGTGAGGACTTAGCTTATAGCCGGTGCAGATCTTGACAGCGC
GCGAAAATTCATCCTTTGAAATGGCTCTATCCGCCAGCGTATACATGCGC
ATGGCGATTGTGAAGTCATCCAGATTGTTGAGGAAGTGACAAAAGTCGCG
GAAATCGTGAAAGGATATGCCCTTCTCATCCTTGACCCGCTCGAGCAGGC
GCTCCAGAAAGACATCATACTCGTCGGTGGCCAAGTACGTGTAACGCAGC
AGGATTTTGGCAAAGTCCAGCTCGCTGATGACGCTGTTGCCCTTGGAGAA
CTCGTGGAACTCCAGCTCCAGCACCTCCGTCTGCAGGTTGTCCATGAAGC
GGTAGAAGTTATCGTAGTTGATCACCCCAGTGCCCCGCTTGCCGAAGAAG
TGCAGCTGCAGTGTGGTGGCCACCATGTGACGCCGCTGCAGACCCTCGCC
ATCGTTTACATAGTTCTCCAGGGGAGTGGGCGTTGCGAGCTCCTCTTCCG
GCTCTTGCTCGCCGTGCTTCTCCTTCCAAGCGCCACTGAAAATGCGCTCC
ATAATTCGCTTGGTTTGTGGATCGACATTTTGAGTGTCTTTTAAAGCGCC
GGCCAAAATGGAAATTATCACTAGAAATTCGTCCTTTGTCACGCGCTGAT
TTCCATCCGTGTCGAACATGTTGAATG

BS06819.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG4662-PA 1494 CG4662-RA 625..1494 886..17 4350 100 Minus
CG4662-PB 1440 CG4662-RB 625..1356 886..155 3660 100 Minus
CG4662-PA 1494 CG4662-RA 584..620 927..891 185 100 Minus
CG4662-PB 1440 CG4662-RB 584..620 927..891 185 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG4662-RA 1830 CG4662-RA 651..1561 927..17 4510 99.8 Minus
CG4662-RD 1911 CG4662-RD 854..1642 802..17 3890 99.6 Minus
CG4662-RB 2279 CG4662-RB 651..1423 927..155 3820 99.7 Minus
CG4662-RD 1911 CG4662-RD 651..775 927..803 580 98.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:05:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19852021..19852429 717..309 2030 99.8 Minus
3R 32079331 3R 19852482..19852778 313..17 1485 100 Minus
3R 32079331 3R 19851832..19851918 802..716 435 100 Minus
3R 32079331 3R 19851064..19851130 869..803 335 100 Minus
3R 32079331 3R 19850894..19850956 927..865 240 92.1 Minus
Blast to na_te.dros performed on 2015-02-10 19:05:56 has no hits.

BS06819.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:58 Download gff for BS06819.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4662-PA 584..1494 17..927 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:36:11 Download gff for BS06819.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4662-PA 584..1494 17..927 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:12:35 Download gff for BS06819.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4662-RA 651..1566 12..927 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:26:25 Download gff for BS06819.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4662-RA 651..1566 12..927 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:26:25 Download gff for BS06819.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19850894..19850952 869..927 96 -> Minus
3R 19851065..19851130 803..868 100 -> Minus
3R 19851832..19851918 716..802 100 -> Minus
3R 19852023..19852425 313..715 100 -> Minus
3R 19852483..19852783 12..312 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:12:35 Download gff for BS06819.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15676616..15676674 869..927 96 -> Minus
arm_3R 15676787..15676852 803..868 100 -> Minus
arm_3R 15677554..15677640 716..802 100 -> Minus
arm_3R 15677745..15678147 313..715 100 -> Minus
arm_3R 15678205..15678505 12..312 99   Minus

BS06819.5prime Sequence

878 bp (800 high quality bases) assembled on 2005-12-04

> BS06819.5prime
GAAGTTATCAGTCGACATGGCGGGTTTAGCGGCTAGATTAACGGTTAAAA
ACTGCACAATAATCGCCCAAAGGTCGAGTGTGATCGTCGGTGTTGGTCGA
TCGGCCAGATTTTCCAGTAGTTCGTCACAAATGGGCAGAATTCCGGGACA
CAAAACTCGACGTCTGCTTACTATTGTAGGCGGTAGTGCTGTTTCTTTAG
CCGCCCTGGCGGCTTTCATCAAACTACGTTCCGCGGAAAACCCTGTGAAT
GCAGTTAGCCTAAAAAGGCGCATGCGCGACGATAGCGAGCTGGAGAACGT
AAAACTGACGGCCCGGGAGCGCCGCTTCATCAAGTTTGCATCCGTGGAGT
ACGATGACCAGCTCTACATGACACCGCAGGACTTCCTAGACTCCGTTGTT
GAGCAGGAGCCCAGACCTCGCTTGAAACGACGCCAGTTGTCCAGCGATGA
GGTGGATAAATACAAGGAGAACACGCCTGCTTTGAAGAAGGGTTCCACTC
GTCTGTTTCGCAACCTAAGGGACAAGGGCATTGTCTCCTACACGGAATAT
TTGTTTTTGCTGTCCATTCTAACAAAGCCGAAATCAGGATTCCGAATCGC
ATTCAACATGTTCGACACGGATGGAAATCAGCGCGTTGACAAGGACGAAT
TTCTAGTGATAATTTCCATTTTGGCCGGCGCTTTAAAAGACACTCAAAAT
GTCGATCCACAAACCAAGCGAATTATGGAGCGCATTTTCAGTGGCGCTTG
GAAGGAGAAGCACGGCGAGCAAGAGCCGGAAGAGGAGCTCGCAACGCCCA
CTCCCCTGGAGAACTATGTAAACGATGGCGAGGGTCTGCAGCGGCGTCAC
ATGGTGGCCACCACACTGCAGCTGCACT

BS06819.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4662-PB 1440 CG4662-RB 1..862 17..878 4310 100 Plus
CG4662-PA 1494 CG4662-RA 1..862 17..878 4310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:27:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4662-RA 1830 CG4662-RA 62..929 11..878 4325 99.9 Plus
CG4662-RB 2279 CG4662-RB 62..929 11..878 4325 99.9 Plus
CG4662-RC 1754 CG4662-RC 62..775 11..724 3555 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:27:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19847372..19847635 11..274 1305 99.6 Plus
3R 32079331 3R 19850011..19850153 274..416 715 100 Plus
3R 32079331 3R 19850209..19850320 417..528 560 100 Plus
3R 32079331 3R 19851832..19851918 725..811 435 100 Plus
3R 32079331 3R 19850870..19850956 576..662 420 98.9 Plus
3R 32079331 3R 19852021..19852089 810..878 345 100 Plus
3R 32079331 3R 19851064..19851130 658..724 335 100 Plus
3R 32079331 3R 19850763..19850811 527..575 245 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:27:14 has no hits.

BS06819.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:59 Download gff for BS06819.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4662-PA 1..862 17..878 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:36:12 Download gff for BS06819.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4662-PA 1..862 17..878 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:10:34 Download gff for BS06819.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4662-RB 59..929 8..878 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:49:15 Download gff for BS06819.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4662-RB 59..929 8..878 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:49:15 Download gff for BS06819.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19851065..19851130 659..724 100 -> Plus
3R 19847369..19847635 8..274 99 -> Plus
3R 19850012..19850153 275..416 100 -> Plus
3R 19850209..19850319 417..527 100 -> Plus
3R 19850764..19850811 528..575 100 -> Plus
3R 19850870..19850952 576..658 100 -> Plus
3R 19851832..19851918 725..811 100 -> Plus
3R 19852023..19852089 812..878 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:10:34 Download gff for BS06819.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15673091..15673357 8..274 99 -> Plus
arm_3R 15675734..15675875 275..416 100 -> Plus
arm_3R 15675931..15676041 417..527 100 -> Plus
arm_3R 15676486..15676533 528..575 100 -> Plus
arm_3R 15676592..15676674 576..658 100 -> Plus
arm_3R 15676787..15676852 659..724 100 -> Plus
arm_3R 15677554..15677640 725..811 100 -> Plus
arm_3R 15677745..15677811 812..878 100   Plus

BS06819.complete Sequence

1526 bp (1526 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635632

> BS06819.complete
GAAGTTATCAGTCGACATGGCGGGTTTAGCGGCTAGATTAACGGTTAAAA
ACTGCACAATAATCGCCCAAAGGTCGAGTGTGATCGTCGGTGTTGGTCGA
TCGGCCAGATTTTCCAGTAGTTCGTCACAAATGGGCAGAATTCCGGGACA
CAAAACTCGACGTCTGCTTACTATTGTAGGCGGTAGTGCTGTTTCTTTAG
CCGCCCTGGCGGCTTTCATCAAACTACGTTCCGCGGAAAACCCTGTGAAT
GCAGTTAGCCTAAAAAGGCGCATGCGCGACGATAGCGAGCTGGAGAACGT
AAAACTGACGGCCCGGGAGCGCCGCTTCATCAAGTTTGCATCCGTGGAGT
ACGATGACCAGCTCTACATGACACCGCAGGACTTCCTAGACTCCGTTGTT
GAGCAGGAGCCCAGACCTCGCTTGAAACGACGCCAGTTGTCCAGCGATGA
GGTGGATAAATACAAGGAGAACACGCCTGCTTTGAAGAAGGGTTCCACTC
GTCTGTTTCGCAACCTAAGGGACAAGGGCATTGTCTCCTACACGGAATAT
TTGTTTTTGCTGTCCATTCTAACAAAGCCGAAATCAGGATTCCGAATCGC
ATTCAACATGTTCGACACGGATGGAAATCAGCGCGTTGACAAGGACGAAT
TTCTAGTGATAATTTCCATTTTGGCCGGCGCTTTAAAAGACACTCAAAAT
GTCGATCCACAAACCAAGCGAATTATGGAGCGCATTTTCAGTGGCGCTTG
GAAGGAGAAGCACGGCGAGCAAGAGCCGGAAGAGGAGCTCGCAACGCCCA
CTCCCCTGGAGAACTATGTAAACGATGGCGAGGGTCTGCAGCGGCGTCAC
ATGGTGGCCACCACACTGCAGCTGCACTTCTTCGGCAAGCGGGGCACTGG
GGTGATCAACTACGATAACTTCTACCGCTTCATGGACAACCTGCAGACGG
AGGTGCTGGAGCTGGAGTTCCACGAGTTCTCCAAGGGCAACAGCGTCATC
AGCGAGCTGGACTTTGCCAAAATCCTGCTGCGTTACACGTACTTGGCCAC
CGACGAGTATGATGTCTTTCTGGAGCGCCTGCTCGAGCGGGTCAAGGATG
AGAAGGGCATATCCTTTCACGATTTCCGCGACTTTTGTCACTTCCTCAAC
AATCTGGATGACTTCACAATCGCCATGCGCATGTATACGCTGGCGGATAG
AGCCATTTCAAAGGATGAATTTTCGCGCGCTGTCAAGATCTGCACCGGCT
ATAAGCTAAGTCCTCACTTGATCGATACCGTGTTCGCCATCTTCGACGCG
GATGGCGATGGCCTGCTGTCCTACAAGGAGTTCATAGCCATCATGAAGGA
TCGCCTGCATCGCGGCTTCAAAGTAAGTGGTCGTTTCTTTGATTACAACG
AAGCTCTGGACGCCTATGATGAGCCCGATTATCCGCTGTTTGTCGCCTGG
CGACATCGGGTGTGCCGCCACCTGGATTACTTCATAGACAGCGATGCGCT
TTGGCACTGAAAGCTTTCTAGACCAT

BS06819.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:11:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG4662-RA 1494 CG4662-PA 1..1494 17..1510 7470 100 Plus
CG4662-RB 1440 CG4662-PB 1..1356 17..1372 6780 100 Plus
CG4662-RD 1575 CG4662-PD 787..1575 725..1510 3865 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:11:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4662-RA 1830 CG4662-RA 62..1561 11..1510 7485 99.9 Plus
CG4662-RB 2279 CG4662-RB 62..1423 11..1372 6795 99.9 Plus
CG4662-RD 1911 CG4662-RD 854..1642 725..1510 3865 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:11:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19852021..19852429 810..1218 2030 99.8 Plus
3R 32079331 3R 19852482..19852778 1214..1510 1485 100 Plus
3R 32079331 3R 19847372..19847635 11..274 1305 99.6 Plus
3R 32079331 3R 19850011..19850153 274..416 715 100 Plus
3R 32079331 3R 19850209..19850320 417..528 560 100 Plus
3R 32079331 3R 19851832..19851918 725..811 435 100 Plus
3R 32079331 3R 19850870..19850956 576..662 420 98.9 Plus
3R 32079331 3R 19851064..19851130 658..724 335 100 Plus
3R 32079331 3R 19850763..19850811 527..575 245 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:11:41 has no hits.

BS06819.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:25 Download gff for BS06819.complete
Subject Subject Range Query Range Percent Splice Strand
CG4662-RA 1..1494 17..1510 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:10 Download gff for BS06819.complete
Subject Subject Range Query Range Percent Splice Strand
CG4662-RA 47..1554 8..1515 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:47:18 Download gff for BS06819.complete
Subject Subject Range Query Range Percent Splice Strand
CG4662-RA 68..1560 17..1509 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:26 Download gff for BS06819.complete
Subject Subject Range Query Range Percent Splice Strand
CG4662-RA 47..1554 8..1515 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:06 Download gff for BS06819.complete
Subject Subject Range Query Range Percent Splice Strand
CG4662-RA 68..1560 17..1509 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:06 Download gff for BS06819.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19851832..19851918 725..811 100 -> Plus
3R 19847378..19847635 17..274 100 -> Plus
3R 19850012..19850153 275..416 100 -> Plus
3R 19850209..19850319 417..527 100 -> Plus
3R 19850764..19850811 528..575 100 -> Plus
3R 19850870..19850952 576..658 100 -> Plus
3R 19851065..19851130 659..724 100 -> Plus
3R 19852023..19852425 812..1214 100 -> Plus
3R 19852483..19852777 1215..1509 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:47:18 Download gff for BS06819.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15677554..15677640 725..811 100 -> Plus
arm_3R 15673100..15673357 17..274 100 -> Plus
arm_3R 15675734..15675875 275..416 100 -> Plus
arm_3R 15675931..15676041 417..527 100 -> Plus
arm_3R 15676486..15676533 528..575 100 -> Plus
arm_3R 15676592..15676674 576..658 100 -> Plus
arm_3R 15676787..15676852 659..724 100 -> Plus
arm_3R 15677745..15678147 812..1214 100 -> Plus
arm_3R 15678205..15678499 1215..1509 100   Plus

BS06819.pep Sequence

Translation from 16 to 1509

> BS06819.pep
MAGLAARLTVKNCTIIAQRSSVIVGVGRSARFSSSSSQMGRIPGHKTRRL
LTIVGGSAVSLAALAAFIKLRSAENPVNAVSLKRRMRDDSELENVKLTAR
ERRFIKFASVEYDDQLYMTPQDFLDSVVEQEPRPRLKRRQLSSDEVDKYK
ENTPALKKGSTRLFRNLRDKGIVSYTEYLFLLSILTKPKSGFRIAFNMFD
TDGNQRVDKDEFLVIISILAGALKDTQNVDPQTKRIMERIFSGAWKEKHG
EQEPEEELATPTPLENYVNDGEGLQRRHMVATTLQLHFFGKRGTGVINYD
NFYRFMDNLQTEVLELEFHEFSKGNSVISELDFAKILLRYTYLATDEYDV
FLERLLERVKDEKGISFHDFRDFCHFLNNLDDFTIAMRMYTLADRAISKD
EFSRAVKICTGYKLSPHLIDTVFAIFDADGDGLLSYKEFIAIMKDRLHRG
FKVSGRFFDYNEALDAYDEPDYPLFVAWRHRVCRHLDYFIDSDALWH*

BS06819.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG4662-PA 497 CG4662-PA 1..497 1..497 2563 100 Plus
CG4662-PD 524 CG4662-PD 1..524 1..497 2514 94.8 Plus
CG4662-PE 494 CG4662-PE 1..494 1..497 2396 95 Plus
CG4662-PB 479 CG4662-PB 1..452 1..452 2302 100 Plus
CG4662-PF 505 CG4662-PF 1..478 1..452 2265 94.6 Plus