Clone Sequence Records
BS06819.3prime Sequence
927 bp (786 high quality bases) assembled on 2005-12-04
> BS06819.3prime
ATGGTCTAGAAAGCTTTCAGTGCCAAAGCGCATCGCTGTCTATGAAGTAA
TCCAGGTGGCGGCACACCCGATGTCGCCAGGCGACAAACAGCGGATAATC
GGGCTCATCATAGGCGTCCAGAGCTTCGTTGTAATCAAAGAAACGACCAC
TTACTTTGAAGCCGCGATGCAGGCGATCCTTCATGATGGCTATGAACTCC
TTGTAGGACAGCAGGCCATCGCCATCCGCGTCGAAGATGGCGAACACGGT
ATCGATCAAGTGAGGACTTAGCTTATAGCCGGTGCAGATCTTGACAGCGC
GCGAAAATTCATCCTTTGAAATGGCTCTATCCGCCAGCGTATACATGCGC
ATGGCGATTGTGAAGTCATCCAGATTGTTGAGGAAGTGACAAAAGTCGCG
GAAATCGTGAAAGGATATGCCCTTCTCATCCTTGACCCGCTCGAGCAGGC
GCTCCAGAAAGACATCATACTCGTCGGTGGCCAAGTACGTGTAACGCAGC
AGGATTTTGGCAAAGTCCAGCTCGCTGATGACGCTGTTGCCCTTGGAGAA
CTCGTGGAACTCCAGCTCCAGCACCTCCGTCTGCAGGTTGTCCATGAAGC
GGTAGAAGTTATCGTAGTTGATCACCCCAGTGCCCCGCTTGCCGAAGAAG
TGCAGCTGCAGTGTGGTGGCCACCATGTGACGCCGCTGCAGACCCTCGCC
ATCGTTTACATAGTTCTCCAGGGGAGTGGGCGTTGCGAGCTCCTCTTCCG
GCTCTTGCTCGCCGTGCTTCTCCTTCCAAGCGCCACTGAAAATGCGCTCC
ATAATTCGCTTGGTTTGTGGATCGACATTTTGAGTGTCTTTTAAAGCGCC
GGCCAAAATGGAAATTATCACTAGAAATTCGTCCTTTGTCACGCGCTGAT
TTCCATCCGTGTCGAACATGTTGAATG
BS06819.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4662-PA | 1494 | CG4662-RA | 625..1494 | 886..17 | 4350 | 100 | Minus |
CG4662-PB | 1440 | CG4662-RB | 625..1356 | 886..155 | 3660 | 100 | Minus |
CG4662-PA | 1494 | CG4662-RA | 584..620 | 927..891 | 185 | 100 | Minus |
CG4662-PB | 1440 | CG4662-RB | 584..620 | 927..891 | 185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:05:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4662-RA | 1830 | CG4662-RA | 651..1561 | 927..17 | 4510 | 99.8 | Minus |
CG4662-RD | 1911 | CG4662-RD | 854..1642 | 802..17 | 3890 | 99.6 | Minus |
CG4662-RB | 2279 | CG4662-RB | 651..1423 | 927..155 | 3820 | 99.7 | Minus |
CG4662-RD | 1911 | CG4662-RD | 651..775 | 927..803 | 580 | 98.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:05:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19852021..19852429 | 717..309 | 2030 | 99.8 | Minus |
3R | 32079331 | 3R | 19852482..19852778 | 313..17 | 1485 | 100 | Minus |
3R | 32079331 | 3R | 19851832..19851918 | 802..716 | 435 | 100 | Minus |
3R | 32079331 | 3R | 19851064..19851130 | 869..803 | 335 | 100 | Minus |
3R | 32079331 | 3R | 19850894..19850956 | 927..865 | 240 | 92.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:05:56 has no hits.
BS06819.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:58 Download gff for
BS06819.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4662-PA | 584..1494 | 17..927 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:36:11 Download gff for
BS06819.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4662-PA | 584..1494 | 17..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:12:35 Download gff for
BS06819.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4662-RA | 651..1566 | 12..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:26:25 Download gff for
BS06819.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4662-RA | 651..1566 | 12..927 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:26:25 Download gff for
BS06819.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19850894..19850952 | 869..927 | 96 | -> | Minus |
3R | 19851065..19851130 | 803..868 | 100 | -> | Minus |
3R | 19851832..19851918 | 716..802 | 100 | -> | Minus |
3R | 19852023..19852425 | 313..715 | 100 | -> | Minus |
3R | 19852483..19852783 | 12..312 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:12:35 Download gff for
BS06819.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15676616..15676674 | 869..927 | 96 | -> | Minus |
arm_3R | 15676787..15676852 | 803..868 | 100 | -> | Minus |
arm_3R | 15677554..15677640 | 716..802 | 100 | -> | Minus |
arm_3R | 15677745..15678147 | 313..715 | 100 | -> | Minus |
arm_3R | 15678205..15678505 | 12..312 | 99 | | Minus |
BS06819.5prime Sequence
878 bp (800 high quality bases) assembled on 2005-12-04
> BS06819.5prime
GAAGTTATCAGTCGACATGGCGGGTTTAGCGGCTAGATTAACGGTTAAAA
ACTGCACAATAATCGCCCAAAGGTCGAGTGTGATCGTCGGTGTTGGTCGA
TCGGCCAGATTTTCCAGTAGTTCGTCACAAATGGGCAGAATTCCGGGACA
CAAAACTCGACGTCTGCTTACTATTGTAGGCGGTAGTGCTGTTTCTTTAG
CCGCCCTGGCGGCTTTCATCAAACTACGTTCCGCGGAAAACCCTGTGAAT
GCAGTTAGCCTAAAAAGGCGCATGCGCGACGATAGCGAGCTGGAGAACGT
AAAACTGACGGCCCGGGAGCGCCGCTTCATCAAGTTTGCATCCGTGGAGT
ACGATGACCAGCTCTACATGACACCGCAGGACTTCCTAGACTCCGTTGTT
GAGCAGGAGCCCAGACCTCGCTTGAAACGACGCCAGTTGTCCAGCGATGA
GGTGGATAAATACAAGGAGAACACGCCTGCTTTGAAGAAGGGTTCCACTC
GTCTGTTTCGCAACCTAAGGGACAAGGGCATTGTCTCCTACACGGAATAT
TTGTTTTTGCTGTCCATTCTAACAAAGCCGAAATCAGGATTCCGAATCGC
ATTCAACATGTTCGACACGGATGGAAATCAGCGCGTTGACAAGGACGAAT
TTCTAGTGATAATTTCCATTTTGGCCGGCGCTTTAAAAGACACTCAAAAT
GTCGATCCACAAACCAAGCGAATTATGGAGCGCATTTTCAGTGGCGCTTG
GAAGGAGAAGCACGGCGAGCAAGAGCCGGAAGAGGAGCTCGCAACGCCCA
CTCCCCTGGAGAACTATGTAAACGATGGCGAGGGTCTGCAGCGGCGTCAC
ATGGTGGCCACCACACTGCAGCTGCACT
BS06819.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4662-PB | 1440 | CG4662-RB | 1..862 | 17..878 | 4310 | 100 | Plus |
CG4662-PA | 1494 | CG4662-RA | 1..862 | 17..878 | 4310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:27:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4662-RA | 1830 | CG4662-RA | 62..929 | 11..878 | 4325 | 99.9 | Plus |
CG4662-RB | 2279 | CG4662-RB | 62..929 | 11..878 | 4325 | 99.9 | Plus |
CG4662-RC | 1754 | CG4662-RC | 62..775 | 11..724 | 3555 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:27:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19847372..19847635 | 11..274 | 1305 | 99.6 | Plus |
3R | 32079331 | 3R | 19850011..19850153 | 274..416 | 715 | 100 | Plus |
3R | 32079331 | 3R | 19850209..19850320 | 417..528 | 560 | 100 | Plus |
3R | 32079331 | 3R | 19851832..19851918 | 725..811 | 435 | 100 | Plus |
3R | 32079331 | 3R | 19850870..19850956 | 576..662 | 420 | 98.9 | Plus |
3R | 32079331 | 3R | 19852021..19852089 | 810..878 | 345 | 100 | Plus |
3R | 32079331 | 3R | 19851064..19851130 | 658..724 | 335 | 100 | Plus |
3R | 32079331 | 3R | 19850763..19850811 | 527..575 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:27:14 has no hits.
BS06819.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:59 Download gff for
BS06819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4662-PA | 1..862 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:36:12 Download gff for
BS06819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4662-PA | 1..862 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:10:34 Download gff for
BS06819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4662-RB | 59..929 | 8..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:49:15 Download gff for
BS06819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4662-RB | 59..929 | 8..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:49:15 Download gff for
BS06819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19851065..19851130 | 659..724 | 100 | -> | Plus |
3R | 19847369..19847635 | 8..274 | 99 | -> | Plus |
3R | 19850012..19850153 | 275..416 | 100 | -> | Plus |
3R | 19850209..19850319 | 417..527 | 100 | -> | Plus |
3R | 19850764..19850811 | 528..575 | 100 | -> | Plus |
3R | 19850870..19850952 | 576..658 | 100 | -> | Plus |
3R | 19851832..19851918 | 725..811 | 100 | -> | Plus |
3R | 19852023..19852089 | 812..878 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:10:34 Download gff for
BS06819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15673091..15673357 | 8..274 | 99 | -> | Plus |
arm_3R | 15675734..15675875 | 275..416 | 100 | -> | Plus |
arm_3R | 15675931..15676041 | 417..527 | 100 | -> | Plus |
arm_3R | 15676486..15676533 | 528..575 | 100 | -> | Plus |
arm_3R | 15676592..15676674 | 576..658 | 100 | -> | Plus |
arm_3R | 15676787..15676852 | 659..724 | 100 | -> | Plus |
arm_3R | 15677554..15677640 | 725..811 | 100 | -> | Plus |
arm_3R | 15677745..15677811 | 812..878 | 100 | | Plus |
BS06819.complete Sequence
1526 bp (1526 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635632
> BS06819.complete
GAAGTTATCAGTCGACATGGCGGGTTTAGCGGCTAGATTAACGGTTAAAA
ACTGCACAATAATCGCCCAAAGGTCGAGTGTGATCGTCGGTGTTGGTCGA
TCGGCCAGATTTTCCAGTAGTTCGTCACAAATGGGCAGAATTCCGGGACA
CAAAACTCGACGTCTGCTTACTATTGTAGGCGGTAGTGCTGTTTCTTTAG
CCGCCCTGGCGGCTTTCATCAAACTACGTTCCGCGGAAAACCCTGTGAAT
GCAGTTAGCCTAAAAAGGCGCATGCGCGACGATAGCGAGCTGGAGAACGT
AAAACTGACGGCCCGGGAGCGCCGCTTCATCAAGTTTGCATCCGTGGAGT
ACGATGACCAGCTCTACATGACACCGCAGGACTTCCTAGACTCCGTTGTT
GAGCAGGAGCCCAGACCTCGCTTGAAACGACGCCAGTTGTCCAGCGATGA
GGTGGATAAATACAAGGAGAACACGCCTGCTTTGAAGAAGGGTTCCACTC
GTCTGTTTCGCAACCTAAGGGACAAGGGCATTGTCTCCTACACGGAATAT
TTGTTTTTGCTGTCCATTCTAACAAAGCCGAAATCAGGATTCCGAATCGC
ATTCAACATGTTCGACACGGATGGAAATCAGCGCGTTGACAAGGACGAAT
TTCTAGTGATAATTTCCATTTTGGCCGGCGCTTTAAAAGACACTCAAAAT
GTCGATCCACAAACCAAGCGAATTATGGAGCGCATTTTCAGTGGCGCTTG
GAAGGAGAAGCACGGCGAGCAAGAGCCGGAAGAGGAGCTCGCAACGCCCA
CTCCCCTGGAGAACTATGTAAACGATGGCGAGGGTCTGCAGCGGCGTCAC
ATGGTGGCCACCACACTGCAGCTGCACTTCTTCGGCAAGCGGGGCACTGG
GGTGATCAACTACGATAACTTCTACCGCTTCATGGACAACCTGCAGACGG
AGGTGCTGGAGCTGGAGTTCCACGAGTTCTCCAAGGGCAACAGCGTCATC
AGCGAGCTGGACTTTGCCAAAATCCTGCTGCGTTACACGTACTTGGCCAC
CGACGAGTATGATGTCTTTCTGGAGCGCCTGCTCGAGCGGGTCAAGGATG
AGAAGGGCATATCCTTTCACGATTTCCGCGACTTTTGTCACTTCCTCAAC
AATCTGGATGACTTCACAATCGCCATGCGCATGTATACGCTGGCGGATAG
AGCCATTTCAAAGGATGAATTTTCGCGCGCTGTCAAGATCTGCACCGGCT
ATAAGCTAAGTCCTCACTTGATCGATACCGTGTTCGCCATCTTCGACGCG
GATGGCGATGGCCTGCTGTCCTACAAGGAGTTCATAGCCATCATGAAGGA
TCGCCTGCATCGCGGCTTCAAAGTAAGTGGTCGTTTCTTTGATTACAACG
AAGCTCTGGACGCCTATGATGAGCCCGATTATCCGCTGTTTGTCGCCTGG
CGACATCGGGTGTGCCGCCACCTGGATTACTTCATAGACAGCGATGCGCT
TTGGCACTGAAAGCTTTCTAGACCAT
BS06819.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:11:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4662-RA | 1494 | CG4662-PA | 1..1494 | 17..1510 | 7470 | 100 | Plus |
CG4662-RB | 1440 | CG4662-PB | 1..1356 | 17..1372 | 6780 | 100 | Plus |
CG4662-RD | 1575 | CG4662-PD | 787..1575 | 725..1510 | 3865 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:11:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4662-RA | 1830 | CG4662-RA | 62..1561 | 11..1510 | 7485 | 99.9 | Plus |
CG4662-RB | 2279 | CG4662-RB | 62..1423 | 11..1372 | 6795 | 99.9 | Plus |
CG4662-RD | 1911 | CG4662-RD | 854..1642 | 725..1510 | 3865 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:11:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19852021..19852429 | 810..1218 | 2030 | 99.8 | Plus |
3R | 32079331 | 3R | 19852482..19852778 | 1214..1510 | 1485 | 100 | Plus |
3R | 32079331 | 3R | 19847372..19847635 | 11..274 | 1305 | 99.6 | Plus |
3R | 32079331 | 3R | 19850011..19850153 | 274..416 | 715 | 100 | Plus |
3R | 32079331 | 3R | 19850209..19850320 | 417..528 | 560 | 100 | Plus |
3R | 32079331 | 3R | 19851832..19851918 | 725..811 | 435 | 100 | Plus |
3R | 32079331 | 3R | 19850870..19850956 | 576..662 | 420 | 98.9 | Plus |
3R | 32079331 | 3R | 19851064..19851130 | 658..724 | 335 | 100 | Plus |
3R | 32079331 | 3R | 19850763..19850811 | 527..575 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:11:41 has no hits.
BS06819.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:25 Download gff for
BS06819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4662-RA | 1..1494 | 17..1510 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:10 Download gff for
BS06819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4662-RA | 47..1554 | 8..1515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:47:18 Download gff for
BS06819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4662-RA | 68..1560 | 17..1509 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:26 Download gff for
BS06819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4662-RA | 47..1554 | 8..1515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:06 Download gff for
BS06819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4662-RA | 68..1560 | 17..1509 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:06 Download gff for
BS06819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19851832..19851918 | 725..811 | 100 | -> | Plus |
3R | 19847378..19847635 | 17..274 | 100 | -> | Plus |
3R | 19850012..19850153 | 275..416 | 100 | -> | Plus |
3R | 19850209..19850319 | 417..527 | 100 | -> | Plus |
3R | 19850764..19850811 | 528..575 | 100 | -> | Plus |
3R | 19850870..19850952 | 576..658 | 100 | -> | Plus |
3R | 19851065..19851130 | 659..724 | 100 | -> | Plus |
3R | 19852023..19852425 | 812..1214 | 100 | -> | Plus |
3R | 19852483..19852777 | 1215..1509 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:47:18 Download gff for
BS06819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15677554..15677640 | 725..811 | 100 | -> | Plus |
arm_3R | 15673100..15673357 | 17..274 | 100 | -> | Plus |
arm_3R | 15675734..15675875 | 275..416 | 100 | -> | Plus |
arm_3R | 15675931..15676041 | 417..527 | 100 | -> | Plus |
arm_3R | 15676486..15676533 | 528..575 | 100 | -> | Plus |
arm_3R | 15676592..15676674 | 576..658 | 100 | -> | Plus |
arm_3R | 15676787..15676852 | 659..724 | 100 | -> | Plus |
arm_3R | 15677745..15678147 | 812..1214 | 100 | -> | Plus |
arm_3R | 15678205..15678499 | 1215..1509 | 100 | | Plus |
BS06819.pep Sequence
Translation from 16 to 1509
> BS06819.pep
MAGLAARLTVKNCTIIAQRSSVIVGVGRSARFSSSSSQMGRIPGHKTRRL
LTIVGGSAVSLAALAAFIKLRSAENPVNAVSLKRRMRDDSELENVKLTAR
ERRFIKFASVEYDDQLYMTPQDFLDSVVEQEPRPRLKRRQLSSDEVDKYK
ENTPALKKGSTRLFRNLRDKGIVSYTEYLFLLSILTKPKSGFRIAFNMFD
TDGNQRVDKDEFLVIISILAGALKDTQNVDPQTKRIMERIFSGAWKEKHG
EQEPEEELATPTPLENYVNDGEGLQRRHMVATTLQLHFFGKRGTGVINYD
NFYRFMDNLQTEVLELEFHEFSKGNSVISELDFAKILLRYTYLATDEYDV
FLERLLERVKDEKGISFHDFRDFCHFLNNLDDFTIAMRMYTLADRAISKD
EFSRAVKICTGYKLSPHLIDTVFAIFDADGDGLLSYKEFIAIMKDRLHRG
FKVSGRFFDYNEALDAYDEPDYPLFVAWRHRVCRHLDYFIDSDALWH*
BS06819.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4662-PA | 497 | CG4662-PA | 1..497 | 1..497 | 2563 | 100 | Plus |
CG4662-PD | 524 | CG4662-PD | 1..524 | 1..497 | 2514 | 94.8 | Plus |
CG4662-PE | 494 | CG4662-PE | 1..494 | 1..497 | 2396 | 95 | Plus |
CG4662-PB | 479 | CG4662-PB | 1..452 | 1..452 | 2302 | 100 | Plus |
CG4662-PF | 505 | CG4662-PF | 1..478 | 1..452 | 2265 | 94.6 | Plus |