Clone Sequence Records
BS06822.3prime Sequence
934 bp (906 high quality bases) assembled on 2005-12-04
> BS06822.3prime
ATGGTCTAGAAAGCTTTTAAGCATGATCCAGCCGGCAGATGGGGCCCTCC
TCCACCATCTTTAGATCCACTTTGGGTCCGACCAAATCGCGAATGTTGTT
GATGCCGTACTTGATCATGGTGGGTCGCTCCAGCGACAGACCCCAGGCGA
TTACATTCACGTTCTCCGGCAGTCCCATGGGCAGCAGCATCTCCGGCCGG
AAGACGCCCGAGTTGCCCACCTCGATCCACTTGGCCAGGCCGGGGTGATA
GCAGAAGATCTCCATGCTGGGCTCGGTGTACGGATTGTACGCCGGCTTGA
ATTCAAGCTGCGTGATGCCCAGCTTTCTGAAGAACTCGTACAGCGTGCCA
ATGAGATCGCCCAGCGTCAGACCAACATCTGCAATCACGCCCTCCACCTG
ATGGAACTCCGCCAGATGTGTGGCGTCCAGTGTTTCGTTGCGGAACACCT
TGTCGATGCTGAAGTACTTGGCTGCTTTGAAGCCGCCCTCCTGGTTGGCC
AGCTTGTACAGCATCCTCGCACTCACGGCCGTCGTATGCGTGCGCAGTAG
ATTCTTCTGCGCCTCCTCCAGCTTCCAGTCGTAGCCGTAACCCTTCGATC
CATAGCCACCCACAGAGTGCACCTTCTTCACGCGCTCCAGATAGTCCTGC
GGAAACTTGTGGCTTTTGGCCGGATGATTCACGAAGAAGGTGTCGTGGGC
ATCGCGAGCTGGATGCTGTTGCGGCTGATAGAGCGCATCGAAGTTCCAGA
ATGACGATTCCACATAGTTGTTCGTAGGCATCTCTGAGAAGCCCATCTCG
AGGAATATCTGCCGGAACTCAGTGCGCACTTTGAGCAAGGGATGGAGATG
TCCACGCGTTGGTGGTGCACCCAACGCATCAAAGTTATAGGCCTTGAACT
TGAGCTGGTCCCCACATCCATTTGCGAGCATTTC
BS06822.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2263-PA | 1497 | CG2263-RA | 602..1497 | 912..17 | 4480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:39:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2263-RA | 1699 | CG2263-RA | 687..1604 | 934..17 | 4545 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:39:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8143999..8144916 | 17..934 | 4545 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-01-31 16:39:53 has no hits.
BS06822.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:04 Download gff for
BS06822.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2263-PA | 580..1497 | 17..934 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:36:19 Download gff for
BS06822.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2263-PA | 580..1497 | 17..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:26:02 Download gff for
BS06822.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2263-RA | 687..1610 | 11..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:43:58 Download gff for
BS06822.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2263-RA | 687..1610 | 11..934 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:43:58 Download gff for
BS06822.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8143993..8144916 | 11..934 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:26:02 Download gff for
BS06822.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8038026..8038949 | 11..934 | 99 | | Plus |
BS06822.5prime Sequence
916 bp (755 high quality bases) assembled on 2005-12-04
> BS06822.5prime
GAAGTTATCAGTCGACATGCATCCCGATCTCACGGAGCGCATTCTCCAGC
ATTTGGAGACCACCGACAAGGCGGACACACTGGACCTGGCCGCACTCTTT
GCCGAGGATCACCAGAAGATTGTGGGCTCATTGAAGAGCATACAGGCGCA
TGGCGAACTAGTCACCGCGGAAACGGTCACCCACAAGAGTTTGGGCCTCA
CAGACGAGGGTCGCGCCGTCGTGGAGAATGGCAGTCATGAGGCACTGGTC
TACGACCTAGTTCCGCCGGAGGGAATCGCCCAGGCGGCTCTAATGGCAGC
CGGTGGCGCAAATGCCAAAGTGGGCTTTAGCAAAGCCATGTCGCACGGCT
GGATTTTGGTGGACAAGAGCGTCACGCCGCCGCTGGTGCGCCGCAAGGTG
GACACCATTACGGATGTGGTGCGCAATCAACTGCAGCAGGTGGCGCTGGG
AAAGGGTGACCAGCTGCCTGCCAAGGAGGTGGCCGACTTCAAGAAACGCA
AGCTCCTCCAGGAAACGACCACCAAGAGCTTCGTGCTGGCACGCGGCCCT
GAATTTGCCACCACTCTCACCAAGTTGGAGACGGATCTCACGGTGGAAAT
GCTCGCAAATGGATTGTGGGACCAGCTCAAGTTCAAGGCCTATAACTTTG
ATGCGTTGGGTGCACCACCAACGCGTGGACATCTCCATCCCTTGCTCAAA
GTGCGCACTGAGTTCCGGCAGATATTCCTCGAGATGGGCTTCTCAGAGAT
GCCTACGAACAACTATGTGGAATCGTCATTCTGGAACTTCGATGCGCTCT
ATCAGCCGCAACAGCATCCAGCTCGCGATGCCCACGACACCTTCTTCGTG
AATCATCCGGCCAAAAGCCACAAGTTTCCGCAGGACTATCTGGAGCGCGT
GAAGAAGGTGCACTCT
BS06822.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2263-PA | 1497 | CG2263-RA | 1..900 | 17..916 | 4500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:51:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2263-RA | 1699 | CG2263-RA | 108..1007 | 17..916 | 4500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:51:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8144596..8145495 | 916..17 | 4500 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:51:26 has no hits.
BS06822.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:05 Download gff for
BS06822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2263-PA | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:36:21 Download gff for
BS06822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2263-PA | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:29:01 Download gff for
BS06822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2263-RA | 103..1007 | 9..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:00:30 Download gff for
BS06822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2263-RA | 103..1007 | 9..916 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:00:30 Download gff for
BS06822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8144596..8145500 | 9..916 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:29:01 Download gff for
BS06822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8038629..8039533 | 9..916 | 99 | | Minus |
BS06822.complete Sequence
1529 bp (1529 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635633
> BS06822.complete
GAAGTTATCAGTCGACATGCATCCCGATCTCACGGAGCGCATTCTCCAGC
ATTTGGAGACCACCGACAAGGCGGACACACTGGACCTGGCCGCACTCTTT
GCCGAGGATCACCAGAAGATTGTGGGCTCATTGAAGAGCATACAGGCGCA
TGGCGAACTAGTCACCGCGGAAACGGTCACCCACAAGAGTTTGGGCCTCA
CAGACGAGGGTCGCGCCGTCGTGGAGAATGGCAGTCATGAGGCACTGGTC
TACGACCTAGTTCCGCCGGAGGGAATCGCCCAGGCGGCTCTAATGGCAGC
CGGTGGCGCAAATGCCAAAGTGGGCTTTAGCAAAGCCATGTCGCACGGCT
GGATTTTGGTGGACAAGAGCGTCACGCCGCCGCTGGTGCGCCGCAAGGTG
GACACCATTACGGATGTGGTGCGCAATCAACTGCAGCAGGTGGCGCTGGG
AAAGGGTGACCAGCTGCCTGCCAAGGAGGTGGCCGACTTCAAGAAACGCA
AGCTCCTCCAGGAAACGACCACCAAGAGCTTCGTGCTGGCACGCGGCCCT
GAATTTGCCACCACTCTCACCAAGTTGGAGACGGATCTCACGGTGGAAAT
GCTCGCAAATGGATTGTGGGACCAGCTCAAGTTCAAGGCCTATAACTTTG
ATGCGTTGGGTGCACCACCAACGCGTGGACATCTCCATCCCTTGCTCAAA
GTGCGCACTGAGTTCCGGCAGATATTCCTCGAGATGGGCTTCTCAGAGAT
GCCTACGAACAACTATGTGGAATCGTCATTCTGGAACTTCGATGCGCTCT
ATCAGCCGCAACAGCATCCAGCTCGCGATGCCCACGACACCTTCTTCGTG
AATCATCCGGCCAAAAGCCACAAGTTTCCGCAGGACTATCTGGAGCGCGT
GAAGAAGGTGCACTCTGTGGGTGGCTATGGATCGAAGGGTTACGGCTACG
ACTGGAAGCTGGAGGAGGCGCAGAAGAATCTACTGCGCACGCATACGACG
GCCGTGAGTGCGAGGATGCTGTACAAGCTGGCCAACCAGGAGGGCGGCTT
CAAAGCAGCCAAGTACTTCAGCATCGACAAGGTGTTCCGCAACGAAACAC
TGGACGCCACACATCTGGCGGAGTTCCATCAGGTGGAGGGCGTGATTGCA
GATGTTGGTCTGACGCTGGGCGATCTCATTGGCACGCTGTACGAGTTCTT
CAGAAAGCTGGGCATCACGCAGCTTGAATTCAAGCCGGCGTACAATCCGT
ACACCGAGCCCAGCATGGAGATCTTCTGCTATCACCCCGGCCTGGCCAAG
TGGATCGAGGTGGGCAACTCGGGCGTCTTCCGGCCGGAGATGCTGCTGCC
CATGGGACTGCCGGAGAACGTGAATGTAATCGCCTGGGGTCTGTCGCTGG
AGCGACCCACCATGATCAAGTACGGCATCAACAACATTCGCGATTTGGTC
GGACCCAAAGTGGATCTAAAGATGGTGGAGGAGGGCCCCATCTGCCGGCT
GGATCATGCTTAAAAGCTTTCTAGACCAT
BS06822.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:27:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2263-RA | 1497 | CG2263-PA | 1..1497 | 17..1513 | 7485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:27:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2263-RA | 1699 | CG2263-RA | 108..1604 | 17..1513 | 7485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:27:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8143999..8145495 | 1513..17 | 7485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:27:53 has no hits.
BS06822.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:28 Download gff for
BS06822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2263-RA | 1..1497 | 17..1513 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:13 Download gff for
BS06822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2263-RA | 102..1609 | 9..1519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:33 Download gff for
BS06822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2263-RA | 108..1602 | 17..1511 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:28 Download gff for
BS06822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2263-RA | 102..1609 | 9..1519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:26:04 Download gff for
BS06822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2263-RA | 108..1602 | 17..1511 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:26:04 Download gff for
BS06822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8144001..8145495 | 17..1511 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:33 Download gff for
BS06822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8038034..8039528 | 17..1511 | 100 | | Minus |
BS06822.pep Sequence
Translation from 16 to 1512
> BS06822.pep
MHPDLTERILQHLETTDKADTLDLAALFAEDHQKIVGSLKSIQAHGELVT
AETVTHKSLGLTDEGRAVVENGSHEALVYDLVPPEGIAQAALMAAGGANA
KVGFSKAMSHGWILVDKSVTPPLVRRKVDTITDVVRNQLQQVALGKGDQL
PAKEVADFKKRKLLQETTTKSFVLARGPEFATTLTKLETDLTVEMLANGL
WDQLKFKAYNFDALGAPPTRGHLHPLLKVRTEFRQIFLEMGFSEMPTNNY
VESSFWNFDALYQPQQHPARDAHDTFFVNHPAKSHKFPQDYLERVKKVHS
VGGYGSKGYGYDWKLEEAQKNLLRTHTTAVSARMLYKLANQEGGFKAAKY
FSIDKVFRNETLDATHLAEFHQVEGVIADVGLTLGDLIGTLYEFFRKLGI
TQLEFKPAYNPYTEPSMEIFCYHPGLAKWIEVGNSGVFRPEMLLPMGLPE
NVNVIAWGLSLERPTMIKYGINNIRDLVGPKVDLKMVEEGPICRLDHA*
BS06822.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2263-PA | 498 | CG2263-PA | 1..498 | 1..498 | 2606 | 100 | Plus |
