Clone BS06824 Report

Search the DGRC for BS06824

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:68
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCG5027-RA
Protein status:BS06824.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06824.3prime Sequence

965 bp (771 high quality bases) assembled on 2005-12-04

> BS06824.3prime
ATGGTCTAGAAAGCTTTTACTCCTTCTTCTCGTGATCTTCATCGGGATCT
TCTTCTGTGACCAAGCAATCGCCGCAGAAAATAGAGTACATGATGAGCGA
TAAGAATCCCAATGGCAGGCCGAAGATGACAGTGGTCAGCACGGGATTTC
CCAGCCACATATCCCTTAATGCTCTTCGCACTTCGAACAGTGCCCGATTC
AAACGTACAAAGTACGTATCTCCTCCATAGGCAATGGCACTTTCGTTGCG
GATGGATTCTAGGAAAAGGTGCAGTGCCTGTGGAGTCATTTGCATTGGAT
CATCTTCGGGTATGAAGTGGTGTTGGGTGCTCGAATTAATCGCTATCAAG
TGAGGCGTGGGCAGTTGATCCAAGATAATGGAATGTGCTATTGATGGCTC
GCCAATCCATCCAAATTGGAATTTGTCATGATATCGCGCCCTATGCTTTC
TTATCACGCCCTCCACCATGTCCCGAAACTCCAGCTCATGCGTGGCTATC
TGATTGAGCTTATCCTCCTGTACCACAGCCAAAACCAAGTACTTGTTTGT
CTTGAGCAGCTGGTGGATGTTGAACCGAGTGACCTTTGGGAAGAGTGTGA
ACCTCTCCACGTTCACCCATTGGAAAACGGTTTCGTTCACTTCATTGGGG
TCCATTTCGTGCGCCAAATGCCCATGCGGATAGAAGTGGTGCTGCTCTTC
TTTGTAGACAATCACCGCTGGCAGTTTCTCAAAGTCAAAGTGTTGGGCAG
CGATATCCTCGCTGGTGGCATAGAAAAATCCATGCTCTTGGTAACCTTCA
GCTGCAGCATAGTATGTATCCCACACCACGCCCTCCTGTTGGCCTACGAA
AATGAAAAATATCGTATGGGATCCCTTTAGCATGTCCACACTCTCCGTTC
GCGTGACCAGCTGAACTGGAGGCCCAAAATCCTTAAGGCATAATCCACAG
CTCATCGCGACCGCG

BS06824.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5027-PA 1293 CG5027-RA 384..1293 926..17 4550 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5027-RA 1862 CG5027-RA 544..1495 965..16 4695 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:34:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16229764..16230324 965..407 2690 99.5 Minus
3L 28110227 3L 16230381..16230772 407..16 1960 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:34:57 has no hits.

BS06824.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:08 Download gff for BS06824.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5027-PA 343..1293 17..965 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:36:24 Download gff for BS06824.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5027-PA 343..1293 17..965 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:13:40 Download gff for BS06824.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5027-RA 544..1495 16..965 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:02 Download gff for BS06824.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5027-RA 544..1495 16..965 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:02 Download gff for BS06824.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16229764..16230324 407..965 99 -> Minus
3L 16230382..16230772 16..406 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:13:40 Download gff for BS06824.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16222864..16223424 407..965 99 -> Minus
arm_3L 16223482..16223872 16..406 100   Minus

BS06824.5prime Sequence

925 bp (823 high quality bases) assembled on 2005-12-04

> BS06824.5prime
GAAGTTATCAGTCGACATGTCGCCAAATTCTATGTGGATTTTCGGCCTCA
TAAGTGCTCTGCTTCTGACTCTGGGTTCGACGGGGCTATCCTCGAAGGTT
TTGGAGCTCAGTGACCGGTTCATCGATGTGCGACACGAGGGCCAATGGTT
GGTCATGTTCTATGCCCCGTGGTGCGGCTACTGCAAGAAAACGGAGCCCA
TTTTTGCTCTGGTGGCTCAGGCTTTGCATGCCACCAACGTTCGAGTGGGT
CGCCTAGATTGTACCAAGTATCCGGCGGCGGCGAAGGAGTTCAAGGTTCG
TGGCTATCCCACCATTATGTTCATCAAGGGCAACATGGAGTTCACCTACA
ACGGAGACCGCGGTCGCGATGAGCTGGTGGATTATGCCTTAAGGATGTCT
GGGCCTCCAGTTCAGCTGGTCACGCGAACGGAGAGTGTGGACATGCTAAA
GGGATCCCATACGATATTTTTCATTTTCGTAGGCCAACAGGAGGGCGTGG
TGTGGGATACATACTATGCTGCAGCTGAAGGTTACCAAGAGCATGGATTT
TTCTATGCCACCAGCGAGGATATCGCTGCCCAACACTTTGACTTTGAGAA
ACTGCCAGCGGTGATTGTCTACAAAGAAGAGCAGCACCACTTCTATCCGC
ATGGGCATTTGGCGCACGAAATGGACCCCAATGAAGTGAACGAAACCGTT
TTCCAATGGGTGAACGTGGAGAGGTTCACACTCTTCCCAAAGGTCACTCG
GTTCAACATCCACCAGCTGCTCAAGACAAACAAGTACTTGGTTTTGGCTG
TGGTACAGGAGGATAAGCTCAATCAGATAGCCACGCATGAGCTGGAGTTT
CGGGACATGGTGGAGGGCGTGATAAGAAAGCATAGGGCGCGATATCATGA
CAAATTCCATTTTGGATGGATGGGC

BS06824.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG5027-PA 1293 CG5027-RA 1..905 17..921 4500 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:51:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG5027-RA 1862 CG5027-RA 202..1110 17..925 4515 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16229699..16230324 294..919 3115 99.8 Plus
3L 28110227 3L 16229404..16229645 56..297 1210 100 Plus
3L 28110227 3L 16229301..16229340 17..56 200 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:51:14 has no hits.

BS06824.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:09 Download gff for BS06824.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5027-PA 1..909 17..925 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:36:25 Download gff for BS06824.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5027-PA 1..909 17..925 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:28:59 Download gff for BS06824.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5027-RA 199..1110 10..925 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:00:29 Download gff for BS06824.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5027-RA 199..1110 10..925 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:00:29 Download gff for BS06824.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16229298..16229340 10..56 91 -> Plus
3L 16229405..16229643 57..295 100 -> Plus
3L 16229701..16230329 296..925 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:28:59 Download gff for BS06824.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16222398..16222440 10..56 91 -> Plus
arm_3L 16222505..16222743 57..295 100 -> Plus
arm_3L 16222801..16223429 296..925 99   Plus

BS06824.complete Sequence

1325 bp (1325 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635634

> BS06824.complete
GAAGTTATCAGTCGACATGTCGCCAAATTCTATGTGGATTTTCGGCCTCA
TAAGTGCTCTGCTTCTGACTCTGGGTTCGACGGGGCTATCCTCGAAGGTT
TTGGAGCTCAGTGACCGGTTCATCGATGTGCGACACGAGGGCCAATGGTT
GGTCATGTTCTATGCCCCGTGGTGCGGCTACTGCAAGAAAACGGAGCCCA
TTTTTGCTCTGGTGGCTCAGGCTTTGCATGCCACCAACGTTCGAGTGGGT
CGCCTAGATTGTACCAAGTATCCGGCGGCGGCGAAGGAGTTCAAGGTTCG
TGGCTATCCCACCATTATGTTCATCAAGGGCAACATGGAGTTCACCTACA
ACGGAGACCGCGGTCGCGATGAGCTGGTGGATTATGCCTTAAGGATGTCT
GGGCCTCCAGTTCAGCTGGTCACGCGAACGGAGAGTGTGGACATGCTAAA
GGGATCCCATACGATATTTTTCATTTTCGTAGGCCAACAGGAGGGCGTGG
TGTGGGATACATACTATGCTGCAGCTGAAGGTTACCAAGAGCATGGATTT
TTCTATGCCACCAGCGAGGATATCGCTGCCCAACACTTTGACTTTGAGAA
ACTGCCAGCGGTGATTGTCTACAAAGAAGAGCAGCACCACTTCTATCCGC
ATGGGCATTTGGCGCACGAAATGGACCCCAATGAAGTGAACGAAACCGTT
TTCCAATGGGTGAACGTGGAGAGGTTCACACTCTTCCCAAAGGTCACTCG
GTTCAACATCCACCAGCTGCTCAAGACAAACAAGTACTTGGTTTTGGCTG
TGGTACAGGAGGATAAGCTCAATCAGATAGCCACGCATGAGCTGGAGTTT
CGGGACATGGTGGAGGGCGTGATAAGAAAGCATAGGGCGCGATATCATGA
CAAATTCCAATTTGGATGGATTGGCGAGCCATCAATAGCACATTCCATTA
TCTTGGATCAACTGCCCACGCCTCACTTGATAGCGATTAATTCGAGCACC
CAACACCACTTCATACCCGAAGATGATCCAATGCAAATGACTCCACAGGC
ACTGCACCTTTTCCTAGAATCCATCCGCAACGAAAGTGCCATTGCCTATG
GAGGAGATACGTACTTTGTACGTTTGAATCGGGCACTGTTCGAAGTGCGA
AGAGCATTAAGGGATATGTGGCTGGGAAATCCCGTGCTGACCACTGTCAT
CTTCGGCCTGCCATTGGGATTCTTATCGCTCATCATGTACTCTATTTTCT
GCGGCGATTGCTTGGTCACAGAAGAAGATCCCGATGAAGATCACGAGAAG
AAGGAGTAAAAGCTTTCTAGACCAT

BS06824.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG5027-RA 1293 CG5027-PA 1..1293 17..1309 6465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5027-RA 1862 CG5027-RA 202..1495 17..1310 6470 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:06:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16229699..16230324 294..919 3130 100 Plus
3L 28110227 3L 16230381..16230772 919..1310 1960 100 Plus
3L 28110227 3L 16229404..16229645 56..297 1210 100 Plus
3L 28110227 3L 16229301..16229340 17..56 200 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:06:49 has no hits.

BS06824.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:29 Download gff for BS06824.complete
Subject Subject Range Query Range Percent Splice Strand
CG5027-RA 1..1293 17..1309 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:16 Download gff for BS06824.complete
Subject Subject Range Query Range Percent Splice Strand
CG5027-RA 193..1489 10..1310 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:45 Download gff for BS06824.complete
Subject Subject Range Query Range Percent Splice Strand
CG5027-RA 202..1492 17..1307 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:39 Download gff for BS06824.complete
Subject Subject Range Query Range Percent Splice Strand
CG5027-RA 202..1492 17..1307 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:39 Download gff for BS06824.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16229301..16229340 17..56 100 -> Plus
3L 16229405..16229643 57..295 100 -> Plus
3L 16229701..16230324 296..919 100 -> Plus
3L 16230382..16230769 920..1307 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:45 Download gff for BS06824.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16222401..16222440 17..56 100 -> Plus
arm_3L 16222505..16222743 57..295 100 -> Plus
arm_3L 16222801..16223424 296..919 100 -> Plus
arm_3L 16223482..16223869 920..1307 100   Plus

BS06824.pep Sequence

Translation from 16 to 1308

> BS06824.pep
MSPNSMWIFGLISALLLTLGSTGLSSKVLELSDRFIDVRHEGQWLVMFYA
PWCGYCKKTEPIFALVAQALHATNVRVGRLDCTKYPAAAKEFKVRGYPTI
MFIKGNMEFTYNGDRGRDELVDYALRMSGPPVQLVTRTESVDMLKGSHTI
FFIFVGQQEGVVWDTYYAAAEGYQEHGFFYATSEDIAAQHFDFEKLPAVI
VYKEEQHHFYPHGHLAHEMDPNEVNETVFQWVNVERFTLFPKVTRFNIHQ
LLKTNKYLVLAVVQEDKLNQIATHELEFRDMVEGVIRKHRARYHDKFQFG
WIGEPSIAHSIILDQLPTPHLIAINSSTQHHFIPEDDPMQMTPQALHLFL
ESIRNESAIAYGGDTYFVRLNRALFEVRRALRDMWLGNPVLTTVIFGLPL
GFLSLIMYSIFCGDCLVTEEDPDEDHEKKE*

BS06824.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG5027-PA 430 CG5027-PA 1..430 1..430 2294 100 Plus
Pdi-PE 496 CG6988-PE 48..196 45..190 191 28.2 Plus
Pdi-PA 496 CG6988-PA 48..196 45..190 191 28.2 Plus
CG9302-PA 510 CG9302-PA 395..509 25..139 182 38.7 Plus
CaBP1-PB 433 CG5809-PB 148..261 20..124 177 37.4 Plus
CG9302-PA 510 CG9302-PA 266..380 21..131 163 32.8 Plus