Clone Sequence Records
BS06824.3prime Sequence
965 bp (771 high quality bases) assembled on 2005-12-04
> BS06824.3prime
ATGGTCTAGAAAGCTTTTACTCCTTCTTCTCGTGATCTTCATCGGGATCT
TCTTCTGTGACCAAGCAATCGCCGCAGAAAATAGAGTACATGATGAGCGA
TAAGAATCCCAATGGCAGGCCGAAGATGACAGTGGTCAGCACGGGATTTC
CCAGCCACATATCCCTTAATGCTCTTCGCACTTCGAACAGTGCCCGATTC
AAACGTACAAAGTACGTATCTCCTCCATAGGCAATGGCACTTTCGTTGCG
GATGGATTCTAGGAAAAGGTGCAGTGCCTGTGGAGTCATTTGCATTGGAT
CATCTTCGGGTATGAAGTGGTGTTGGGTGCTCGAATTAATCGCTATCAAG
TGAGGCGTGGGCAGTTGATCCAAGATAATGGAATGTGCTATTGATGGCTC
GCCAATCCATCCAAATTGGAATTTGTCATGATATCGCGCCCTATGCTTTC
TTATCACGCCCTCCACCATGTCCCGAAACTCCAGCTCATGCGTGGCTATC
TGATTGAGCTTATCCTCCTGTACCACAGCCAAAACCAAGTACTTGTTTGT
CTTGAGCAGCTGGTGGATGTTGAACCGAGTGACCTTTGGGAAGAGTGTGA
ACCTCTCCACGTTCACCCATTGGAAAACGGTTTCGTTCACTTCATTGGGG
TCCATTTCGTGCGCCAAATGCCCATGCGGATAGAAGTGGTGCTGCTCTTC
TTTGTAGACAATCACCGCTGGCAGTTTCTCAAAGTCAAAGTGTTGGGCAG
CGATATCCTCGCTGGTGGCATAGAAAAATCCATGCTCTTGGTAACCTTCA
GCTGCAGCATAGTATGTATCCCACACCACGCCCTCCTGTTGGCCTACGAA
AATGAAAAATATCGTATGGGATCCCTTTAGCATGTCCACACTCTCCGTTC
GCGTGACCAGCTGAACTGGAGGCCCAAAATCCTTAAGGCATAATCCACAG
CTCATCGCGACCGCG
BS06824.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5027-PA | 1293 | CG5027-RA | 384..1293 | 926..17 | 4550 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5027-RA | 1862 | CG5027-RA | 544..1495 | 965..16 | 4695 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:34:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16229764..16230324 | 965..407 | 2690 | 99.5 | Minus |
3L | 28110227 | 3L | 16230381..16230772 | 407..16 | 1960 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:34:57 has no hits.
BS06824.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:08 Download gff for
BS06824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5027-PA | 343..1293 | 17..965 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:36:24 Download gff for
BS06824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5027-PA | 343..1293 | 17..965 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:13:40 Download gff for
BS06824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5027-RA | 544..1495 | 16..965 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:02 Download gff for
BS06824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5027-RA | 544..1495 | 16..965 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:02 Download gff for
BS06824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16229764..16230324 | 407..965 | 99 | -> | Minus |
3L | 16230382..16230772 | 16..406 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:13:40 Download gff for
BS06824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16222864..16223424 | 407..965 | 99 | -> | Minus |
arm_3L | 16223482..16223872 | 16..406 | 100 | | Minus |
BS06824.5prime Sequence
925 bp (823 high quality bases) assembled on 2005-12-04
> BS06824.5prime
GAAGTTATCAGTCGACATGTCGCCAAATTCTATGTGGATTTTCGGCCTCA
TAAGTGCTCTGCTTCTGACTCTGGGTTCGACGGGGCTATCCTCGAAGGTT
TTGGAGCTCAGTGACCGGTTCATCGATGTGCGACACGAGGGCCAATGGTT
GGTCATGTTCTATGCCCCGTGGTGCGGCTACTGCAAGAAAACGGAGCCCA
TTTTTGCTCTGGTGGCTCAGGCTTTGCATGCCACCAACGTTCGAGTGGGT
CGCCTAGATTGTACCAAGTATCCGGCGGCGGCGAAGGAGTTCAAGGTTCG
TGGCTATCCCACCATTATGTTCATCAAGGGCAACATGGAGTTCACCTACA
ACGGAGACCGCGGTCGCGATGAGCTGGTGGATTATGCCTTAAGGATGTCT
GGGCCTCCAGTTCAGCTGGTCACGCGAACGGAGAGTGTGGACATGCTAAA
GGGATCCCATACGATATTTTTCATTTTCGTAGGCCAACAGGAGGGCGTGG
TGTGGGATACATACTATGCTGCAGCTGAAGGTTACCAAGAGCATGGATTT
TTCTATGCCACCAGCGAGGATATCGCTGCCCAACACTTTGACTTTGAGAA
ACTGCCAGCGGTGATTGTCTACAAAGAAGAGCAGCACCACTTCTATCCGC
ATGGGCATTTGGCGCACGAAATGGACCCCAATGAAGTGAACGAAACCGTT
TTCCAATGGGTGAACGTGGAGAGGTTCACACTCTTCCCAAAGGTCACTCG
GTTCAACATCCACCAGCTGCTCAAGACAAACAAGTACTTGGTTTTGGCTG
TGGTACAGGAGGATAAGCTCAATCAGATAGCCACGCATGAGCTGGAGTTT
CGGGACATGGTGGAGGGCGTGATAAGAAAGCATAGGGCGCGATATCATGA
CAAATTCCATTTTGGATGGATGGGC
BS06824.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5027-PA | 1293 | CG5027-RA | 1..905 | 17..921 | 4500 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:51:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5027-RA | 1862 | CG5027-RA | 202..1110 | 17..925 | 4515 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:51:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16229699..16230324 | 294..919 | 3115 | 99.8 | Plus |
3L | 28110227 | 3L | 16229404..16229645 | 56..297 | 1210 | 100 | Plus |
3L | 28110227 | 3L | 16229301..16229340 | 17..56 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:51:14 has no hits.
BS06824.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:09 Download gff for
BS06824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5027-PA | 1..909 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:36:25 Download gff for
BS06824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5027-PA | 1..909 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:28:59 Download gff for
BS06824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5027-RA | 199..1110 | 10..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:00:29 Download gff for
BS06824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5027-RA | 199..1110 | 10..925 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:00:29 Download gff for
BS06824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16229298..16229340 | 10..56 | 91 | -> | Plus |
3L | 16229405..16229643 | 57..295 | 100 | -> | Plus |
3L | 16229701..16230329 | 296..925 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:28:59 Download gff for
BS06824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16222398..16222440 | 10..56 | 91 | -> | Plus |
arm_3L | 16222505..16222743 | 57..295 | 100 | -> | Plus |
arm_3L | 16222801..16223429 | 296..925 | 99 | | Plus |
BS06824.complete Sequence
1325 bp (1325 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635634
> BS06824.complete
GAAGTTATCAGTCGACATGTCGCCAAATTCTATGTGGATTTTCGGCCTCA
TAAGTGCTCTGCTTCTGACTCTGGGTTCGACGGGGCTATCCTCGAAGGTT
TTGGAGCTCAGTGACCGGTTCATCGATGTGCGACACGAGGGCCAATGGTT
GGTCATGTTCTATGCCCCGTGGTGCGGCTACTGCAAGAAAACGGAGCCCA
TTTTTGCTCTGGTGGCTCAGGCTTTGCATGCCACCAACGTTCGAGTGGGT
CGCCTAGATTGTACCAAGTATCCGGCGGCGGCGAAGGAGTTCAAGGTTCG
TGGCTATCCCACCATTATGTTCATCAAGGGCAACATGGAGTTCACCTACA
ACGGAGACCGCGGTCGCGATGAGCTGGTGGATTATGCCTTAAGGATGTCT
GGGCCTCCAGTTCAGCTGGTCACGCGAACGGAGAGTGTGGACATGCTAAA
GGGATCCCATACGATATTTTTCATTTTCGTAGGCCAACAGGAGGGCGTGG
TGTGGGATACATACTATGCTGCAGCTGAAGGTTACCAAGAGCATGGATTT
TTCTATGCCACCAGCGAGGATATCGCTGCCCAACACTTTGACTTTGAGAA
ACTGCCAGCGGTGATTGTCTACAAAGAAGAGCAGCACCACTTCTATCCGC
ATGGGCATTTGGCGCACGAAATGGACCCCAATGAAGTGAACGAAACCGTT
TTCCAATGGGTGAACGTGGAGAGGTTCACACTCTTCCCAAAGGTCACTCG
GTTCAACATCCACCAGCTGCTCAAGACAAACAAGTACTTGGTTTTGGCTG
TGGTACAGGAGGATAAGCTCAATCAGATAGCCACGCATGAGCTGGAGTTT
CGGGACATGGTGGAGGGCGTGATAAGAAAGCATAGGGCGCGATATCATGA
CAAATTCCAATTTGGATGGATTGGCGAGCCATCAATAGCACATTCCATTA
TCTTGGATCAACTGCCCACGCCTCACTTGATAGCGATTAATTCGAGCACC
CAACACCACTTCATACCCGAAGATGATCCAATGCAAATGACTCCACAGGC
ACTGCACCTTTTCCTAGAATCCATCCGCAACGAAAGTGCCATTGCCTATG
GAGGAGATACGTACTTTGTACGTTTGAATCGGGCACTGTTCGAAGTGCGA
AGAGCATTAAGGGATATGTGGCTGGGAAATCCCGTGCTGACCACTGTCAT
CTTCGGCCTGCCATTGGGATTCTTATCGCTCATCATGTACTCTATTTTCT
GCGGCGATTGCTTGGTCACAGAAGAAGATCCCGATGAAGATCACGAGAAG
AAGGAGTAAAAGCTTTCTAGACCAT
BS06824.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:06:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5027-RA | 1293 | CG5027-PA | 1..1293 | 17..1309 | 6465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:06:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5027-RA | 1862 | CG5027-RA | 202..1495 | 17..1310 | 6470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:06:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16229699..16230324 | 294..919 | 3130 | 100 | Plus |
3L | 28110227 | 3L | 16230381..16230772 | 919..1310 | 1960 | 100 | Plus |
3L | 28110227 | 3L | 16229404..16229645 | 56..297 | 1210 | 100 | Plus |
3L | 28110227 | 3L | 16229301..16229340 | 17..56 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:06:49 has no hits.
BS06824.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:29 Download gff for
BS06824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5027-RA | 1..1293 | 17..1309 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:16 Download gff for
BS06824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5027-RA | 193..1489 | 10..1310 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:45 Download gff for
BS06824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5027-RA | 202..1492 | 17..1307 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:39 Download gff for
BS06824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5027-RA | 202..1492 | 17..1307 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:39 Download gff for
BS06824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16229301..16229340 | 17..56 | 100 | -> | Plus |
3L | 16229405..16229643 | 57..295 | 100 | -> | Plus |
3L | 16229701..16230324 | 296..919 | 100 | -> | Plus |
3L | 16230382..16230769 | 920..1307 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:45 Download gff for
BS06824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16222401..16222440 | 17..56 | 100 | -> | Plus |
arm_3L | 16222505..16222743 | 57..295 | 100 | -> | Plus |
arm_3L | 16222801..16223424 | 296..919 | 100 | -> | Plus |
arm_3L | 16223482..16223869 | 920..1307 | 100 | | Plus |
BS06824.pep Sequence
Translation from 16 to 1308
> BS06824.pep
MSPNSMWIFGLISALLLTLGSTGLSSKVLELSDRFIDVRHEGQWLVMFYA
PWCGYCKKTEPIFALVAQALHATNVRVGRLDCTKYPAAAKEFKVRGYPTI
MFIKGNMEFTYNGDRGRDELVDYALRMSGPPVQLVTRTESVDMLKGSHTI
FFIFVGQQEGVVWDTYYAAAEGYQEHGFFYATSEDIAAQHFDFEKLPAVI
VYKEEQHHFYPHGHLAHEMDPNEVNETVFQWVNVERFTLFPKVTRFNIHQ
LLKTNKYLVLAVVQEDKLNQIATHELEFRDMVEGVIRKHRARYHDKFQFG
WIGEPSIAHSIILDQLPTPHLIAINSSTQHHFIPEDDPMQMTPQALHLFL
ESIRNESAIAYGGDTYFVRLNRALFEVRRALRDMWLGNPVLTTVIFGLPL
GFLSLIMYSIFCGDCLVTEEDPDEDHEKKE*
BS06824.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5027-PA | 430 | CG5027-PA | 1..430 | 1..430 | 2294 | 100 | Plus |
Pdi-PE | 496 | CG6988-PE | 48..196 | 45..190 | 191 | 28.2 | Plus |
Pdi-PA | 496 | CG6988-PA | 48..196 | 45..190 | 191 | 28.2 | Plus |
CG9302-PA | 510 | CG9302-PA | 395..509 | 25..139 | 182 | 38.7 | Plus |
CaBP1-PB | 433 | CG5809-PB | 148..261 | 20..124 | 177 | 37.4 | Plus |
CG9302-PA | 510 | CG9302-PA | 266..380 | 21..131 | 163 | 32.8 | Plus |