Clone Sequence Records
BS06826.complete Sequence
2027 bp assembled on 2009-12-07
GenBank Submission: KX801691
> BS06826.complete
GAAGTTATCAGTCGACATGAGATTTATAAATTGGGTACTTCCCCTGCTTC
TGGCCACGTTGGTCGCCCTGCAACAGCCCACACTAACGGACGCTCTGATC
GAGGATGTCCTGGACATCATACATGTGGTCAAAGAGGTCACCTCCGGCGT
CCTCAAGGCCTGGGACATTGTACAATCCTCCCCGTTGGCGGCCAACATTG
ATTTCCCACTGATGCGCGAGAAACAGAAGAAGGTGTTGCAGCGCCTCAAA
GAAGTCAGCAAGCAAATAGACAATACCGAAGATCAGCACGCTCAATATGT
TGCCTTGGCCATCGAATCGGTGACTAGCTTCATGCACAACAACGCTCCAA
TTATGGCTAAGATGAATGATATCTCGGACACGATCAATAGGATCTCATCG
CGCTATCAGCAGATGCAGAAGTACGAGGCTTACAAGGACAAGTTGGAGAT
GTCCACGCTGATAACGTTTGCGGAGTGGACAGTGTCGCCGAATGCACATT
CGGTGCACCATCTGATGGATCGTCTGCATATCACTCTACTTGGCAACGAG
GATCGATCTTCCAACACAACGTCCACCAATCTACTCCAACAGCTGGCCAC
TGCCTATGAGGTGTCTACCGATCAAATTTGCAATACCATGCAATCGGCCC
AGCAGTTTATATACTCACTATATGCGGATATAGCCCTGACCGAACTGAAA
GCCTACACCATGATGGAATTCTCGTGGATGATGTTGCGGGTCTACGGGAA
GGGCAACTACACCCAGGAGGCGGAAATCATGCGTTCCGAATATGAGAAGA
GGACGGAACGCACACTAAAAATACTCAAGGATGTGATGCTACGAGCTGAT
CGTATCGTTTACCGCTGTGATCCGACGAAACATGTACGGGGAGTCACCTA
TGACGAGGTCACGCGCCTCCTTCAAGGCTACATTGAAAACGAGGTGGATT
TGAATAAAGAGGAAACTTGCCGAGAGACGTGTGACTTTTATCAGTCCACC
CGCAGTGAAGGCTGCTTTAAGGATCTCTACTGTTCCCGTCAGCCGAAATG
TAGTGGTCGTCTGTACAACTGCAGGTTCGTAGACTCCGACATGTGGGTGT
GCCCGTCGCCACAGAATAGCACGCGGCGCTATGAGTTCATCGAGTACGAA
AACGGACGCGTCCTTGGCCAGCGGGGTAAGTGCACCAGGGGCACCACCAA
GGTGGACAGCTGGTGGCGTTACCTTCTCTGGCACTGCAGCTACTGCTTCT
GCCTGTGCGACGAGGAGGGTCTGAAGTCTGATCGTTTCTTCAATCTGCGG
GACACGATCGCCGATGTCAAGCGCAACCGAGTCGTGACTGGTTTGCGTTT
TGTAAAGCAAAATCGCATTTTCCATCTGCAAATCCAGGAGGGCGAACTCC
TGCCTCGTGGTATTGTCAATCAAAGCACTCTGGAATGGAAACCCGTGGAA
AAGTACAACGTCTTTGATCGTCATGTGAAGAATGGCGTTGATTATCATAA
GTTGAGCTACGAGAAACGCACCATCGATCTGGACGATGTGGATACGGATG
ACAATTCCTTTGTCGTTACCGGCGTGCGATTCCGTGTGGTGGGCACACAT
CTGAATTTGGAGGCCTACTACAGTGAGTTTGATTTCCGGACGGGTCAGCT
CATCCGGCCGGAGTACAATAGCTATTGGAAGTCCAACGACAATACCGATG
TCAGCGGCGCACGCAGGGAGAAACTGCGTCTGAGCAACGCCGACGTGTCT
ACGCGGACAATAGCACACTCGATACCTCTGTCGCGCCACAATCAGTACAT
CGACTTCACTAACACTGGACTGGACAAGGATGCCGCCCAGAGCACAGTGC
CGTTTATGGACATCCAGGACGTGGTCTCGAATCCACCAGTACCACTAGCC
GGCATTGGCATTTACTACAAGGGCCGCAACGGCTACGGCGGCTTCCTGGG
CCCCAAGATCATCACCTACGACTTCATGCCCCACGTTCAGGTGCCAAAGA
ATAGATTCTAAAAGCTTTCTAGACCAT
BS06826.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:26:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0193-RA | 1995 | CG2206-PA | 1..1995 | 17..2011 | 9975 | 100 | Plus |
| l(1)G0193-RB | 1941 | CG2206-PB | 541..1941 | 611..2011 | 7005 | 100 | Plus |
| CG31664-RC | 1590 | CG31664-PC | 1370..1558 | 1788..1976 | 255 | 75.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:26:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0193-RA | 2453 | CG2206-RA | 233..2228 | 17..2012 | 9980 | 100 | Plus |
| l(1)G0193-RB | 2559 | CG2206-RB | 933..2334 | 611..2012 | 7010 | 100 | Plus |
| CG31664-RC | 2075 | CG31664-RC | 1623..1811 | 1788..1976 | 255 | 75.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:26:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7942509..7943229 | 1329..609 | 3605 | 100 | Minus |
| X | 23542271 | X | 7942057..7942445 | 1717..1329 | 1945 | 100 | Minus |
| X | 23542271 | X | 7945894..7946223 | 612..283 | 1650 | 100 | Minus |
| X | 23542271 | X | 7941703..7942001 | 2012..1714 | 1495 | 100 | Minus |
| X | 23542271 | X | 7946407..7946676 | 286..17 | 1350 | 100 | Minus |
| 2L | 23513712 | 2L | 1824436..1824624 | 1976..1788 | 255 | 75.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:26:39 has no hits.
BS06826.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:04 Download gff for
BS06826.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0193-RA | 331..2323 | 17..2009 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:20 Download gff for
BS06826.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0193-RA | 233..2225 | 17..2009 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:01:38 Download gff for
BS06826.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0193-RA | 331..2323 | 17..2009 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:33 Download gff for
BS06826.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0193-RA | 233..2225 | 17..2009 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:33 Download gff for
BS06826.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7941706..7941998 | 1717..2009 | 100 | <- | Minus |
| X | 7942058..7942444 | 1330..1716 | 100 | <- | Minus |
| X | 7942509..7943227 | 611..1329 | 100 | <- | Minus |
| X | 7945896..7946219 | 287..610 | 100 | <- | Minus |
| X | 7946407..7946676 | 17..286 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:20 Download gff for
BS06826.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7835739..7836031 | 1717..2009 | 100 | <- | Minus |
| arm_X | 7836091..7836477 | 1330..1716 | 100 | <- | Minus |
| arm_X | 7836542..7837260 | 611..1329 | 100 | <- | Minus |
| arm_X | 7839929..7840252 | 287..610 | 100 | <- | Minus |
| arm_X | 7840440..7840709 | 17..286 | 100 | | Minus |
BS06826.3prime Sequence
896 bp (796 high quality bases) assembled on 2005-12-04
> BS06826.3prime
ATGGTCTAGAAAGCTTTTAGAATCTATTCTTTGGCACCTGAACGTGGGGC
ATGAAGTCGTAGGTGATGATCTTGGGGCCCAGGAAGCCGCCGTAGCCGTT
GCGGCCCTTGTAGTAAATGCCAATGCCGGCTAGTGGTACTGGTGGATTCG
AGACCACGTCCTGGATGTCCATAAACGGCACTGTGCTCTGGGCGGCATCC
TTGTCCAGTCCAGTGTTAGTGAAGTCGATGTACTGATTGTGGCGCGACAG
AGGTATCGAGTGTGCTATTGTCCGCGTAGACACGTCGGCGTTGCTCAGAC
GCAGTTTCTCCCTGCGTGCGCCGCTGACATCGGTATTGTCGTTGGACTTC
CAATAGCTATTGTACTCCGGCCGGATGAGCTGACCCGTCCGGAAATCAAA
CTCACTGTAGTAGGCCTCCAAATTCAGATGTGTGCCCACCACACGGAATC
GCACGCCGGTAACGACAAAGGAATTGTCATCCGTATCCACATCGTCCAGA
TCGATGGTGCGTTTCTCGTAGCTCAACTTATGATAATCAACGCCATTCTT
CACATGACGATCAAAGACGTTGTACTTTTCCACGGGTTTCCATTCCAGAG
TGCTTTGATTGACAATACCACGAGGCAGGAGTTCGCCCTCCTGGATTTGC
AGATGGAAAATGCGATTTTGCTTTACAAAACGCAAACCAGTCACGACTCG
GTTGCGCTTGACATCGGCGATCGTGTCCCGCAGATTGAAGAAACGATCAG
ACTTCAGACCCTCCTCGTCGCACAGGCAGAAGCAGTAGCTGCAGTGCCAG
AGAAGGTAACGCCACCAGCTGTCCACCTTGGTGGTGCCCCTGGTGCACTT
ACCCCGCTGGCCAAGGACGCCGTCGTTTTCGTACTCGATGAACTCA
BS06826.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2206-PA | 1995 | l(1)G0193-RA | 1142..1995 | 870..17 | 4270 | 100 | Minus |
| CG2206-PB | 1941 | l(1)G0193-RB | 1088..1941 | 870..17 | 4270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:47:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0193-RB | 2559 | CG2206-RB | 1454..2334 | 896..16 | 4360 | 99.8 | Minus |
| l(1)G0193-RA | 2453 | CG2206-RA | 1348..2228 | 896..16 | 4360 | 99.8 | Minus |
| CG31664-RC | 2075 | CG31664-RC | 1623..1811 | 240..52 | 270 | 76.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:46:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7942057..7942445 | 311..699 | 1945 | 100 | Plus |
| X | 23542271 | X | 7941703..7942001 | 16..314 | 1495 | 100 | Plus |
| X | 23542271 | X | 7942509..7942706 | 699..896 | 945 | 98.5 | Plus |
| 2L | 23513712 | 2L | 1824436..1824624 | 52..240 | 255 | 75.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:47:00 has no hits.
BS06826.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:13 Download gff for
BS06826.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2206-PB | 1063..1941 | 17..895 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:36:29 Download gff for
BS06826.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2206-PB | 1063..1941 | 17..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:45:30 Download gff for
BS06826.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0193-RA | 1349..2230 | 13..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:50 Download gff for
BS06826.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0193-RA | 1349..2230 | 13..895 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:50 Download gff for
BS06826.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7941701..7941998 | 13..311 | 99 | <- | Plus |
| X | 7942058..7942444 | 312..698 | 100 | <- | Plus |
| X | 7942509..7942705 | 699..895 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:45:30 Download gff for
BS06826.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7835734..7836031 | 13..311 | 99 | <- | Plus |
| arm_X | 7836091..7836477 | 312..698 | 100 | <- | Plus |
| arm_X | 7836542..7836738 | 699..895 | 98 | | Plus |
BS06826.5prime Sequence
915 bp (766 high quality bases) assembled on 2005-12-04
> BS06826.5prime
GAAGTTATCAGTCGACATGAGATTTATAAATTGGGTACTTCCCCTGCTTC
TGGCCACGTTGGTCGCCCTGCAACAGCCCACACTAACGGACGCTCTGATC
GAGGATGTCCTGGACATCATACATGTGGTCAAAGAGGTCACCTCCGGCGT
CCTCAAGGCCTGGGACATTGTACAATCCTCCCCGTTGGCGGCCAACATTG
ATTTCCCACTGATGCGCGAGAAACAGAAGAAGGTGTTGCAGCGCCTCAAA
GAAGTCAGCAAGCAAATAGACAATACCGAAGATCAGCACGCTCAATATGT
TGCCTTGGCCATCGAATCGGTGACTAGCTTCATGCACAACAACGCTCCAA
TTATGGCTAAGATGAATGATATCTCGGACACGATCAATAGGATCTCATCG
CGCTATCAGCAGATGCAGAAGTACGAGGCTTACAAGGACAAGTTGGAGAT
GTCCACGCTGATAACGTTTGCGGAGTGGACAGTGTCGCCGAATGCACATT
CGGTGCACCATCTGATGGATCGTCTGCATATCACTCTACTTGGCAACGAG
GATCGATCTTCCAACACAACGTCCACCAATCTACTCCAACAGCTGGCCAC
TGCCTATGAGGTGTCTACCGATCAAATTTGCAATACCATGCAATCGGCCC
AGCAGTTTATATACTCACTATATGCGGATATAGCCCTGACCGAACTGAAA
GCCTACACCATGATGGAATTCTCGTGGATGATGTTGCGGGTCTACGGGAA
GGGCAACTACACCCAGGAGGCGGAAATCATGCGTTCCGAATATGAGAAGA
GGACGGAACGCACACTAAAAATACTCAAGGATGTGATGCTACGAGCTGAT
CGTATCGTTTACCGCTGTGATCCGACGAAACATGTACGGGGAGTCACCTA
TGACGAGGTCACGCG
BS06826.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2206-PA | 1995 | l(1)G0193-RA | 1..899 | 17..915 | 4495 | 100 | Plus |
| CG2206-PB | 1941 | l(1)G0193-RB | 541..845 | 611..915 | 1525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:30:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0193-RA | 2453 | CG2206-RA | 233..1131 | 17..915 | 4495 | 100 | Plus |
| l(1)G0193-RB | 2559 | CG2206-RB | 933..1237 | 611..915 | 1525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:30:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7945894..7946223 | 612..283 | 1650 | 100 | Minus |
| X | 23542271 | X | 7942923..7943229 | 915..609 | 1535 | 100 | Minus |
| X | 23542271 | X | 7946407..7946676 | 286..17 | 1350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 22:30:26 has no hits.
BS06826.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:14 Download gff for
BS06826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2206-PA | 1..899 | 17..915 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:36:31 Download gff for
BS06826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2206-PA | 1..899 | 17..915 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:25:54 Download gff for
BS06826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0193-RA | 229..1131 | 9..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:45:20 Download gff for
BS06826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0193-RA | 229..1131 | 9..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:45:20 Download gff for
BS06826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7942923..7943227 | 611..915 | 100 | <- | Minus |
| X | 7945896..7946219 | 287..610 | 100 | <- | Minus |
| X | 7946407..7946680 | 9..286 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:25:54 Download gff for
BS06826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7836956..7837260 | 611..915 | 100 | <- | Minus |
| arm_X | 7839929..7840252 | 287..610 | 100 | <- | Minus |
| arm_X | 7840440..7840713 | 9..286 | 98 | | Minus |
BS06826.pep Sequence
Translation from 16 to 2010
> BS06826.pep
MRFINWVLPLLLATLVALQQPTLTDALIEDVLDIIHVVKEVTSGVLKAWD
IVQSSPLAANIDFPLMREKQKKVLQRLKEVSKQIDNTEDQHAQYVALAIE
SVTSFMHNNAPIMAKMNDISDTINRISSRYQQMQKYEAYKDKLEMSTLIT
FAEWTVSPNAHSVHHLMDRLHITLLGNEDRSSNTTSTNLLQQLATAYEVS
TDQICNTMQSAQQFIYSLYADIALTELKAYTMMEFSWMMLRVYGKGNYTQ
EAEIMRSEYEKRTERTLKILKDVMLRADRIVYRCDPTKHVRGVTYDEVTR
LLQGYIENEVDLNKEETCRETCDFYQSTRSEGCFKDLYCSRQPKCSGRLY
NCRFVDSDMWVCPSPQNSTRRYEFIEYENGRVLGQRGKCTRGTTKVDSWW
RYLLWHCSYCFCLCDEEGLKSDRFFNLRDTIADVKRNRVVTGLRFVKQNR
IFHLQIQEGELLPRGIVNQSTLEWKPVEKYNVFDRHVKNGVDYHKLSYEK
RTIDLDDVDTDDNSFVVTGVRFRVVGTHLNLEAYYSEFDFRTGQLIRPEY
NSYWKSNDNTDVSGARREKLRLSNADVSTRTIAHSIPLSRHNQYIDFTNT
GLDKDAAQSTVPFMDIQDVVSNPPVPLAGIGIYYKGRNGYGGFLGPKIIT
YDFMPHVQVPKNRF*
BS06826.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:33:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0193-PA | 664 | CG2206-PA | 1..664 | 1..664 | 3511 | 100 | Plus |
| l(1)G0193-PB | 646 | CG2206-PB | 98..646 | 129..664 | 2524 | 88.4 | Plus |
| CG31664-PC | 529 | CG31664-PC | 4..526 | 122..660 | 1402 | 50.5 | Plus |
| CG31664-PB | 528 | CG31664-PB | 4..525 | 122..660 | 1396 | 50.1 | Plus |
| CG30409-PB | 98 | CG30409-PB | 29..96 | 293..358 | 156 | 39.7 | Plus |
