Clone Sequence Records
BS06827.3prime Sequence
915 bp (823 high quality bases) assembled on 2005-12-04
> BS06827.3prime
ATGGTCTAGAAAGCTTCTACAACTGTGCCGCGAGTCCGGAGGCAGAGATG
TTGTCGCCAGCCCCAGCCGTTTTTCTGGCTTCGCGACACACCAGCACCGG
GGCCACACAGATTTCCACCTCTAGCCGTTGCCGGTGACGACCGTACTGGA
TATACTCCCGCCAACAGGGCACGGGACTGGCTGCACCAATGCGCATTCGC
GGCGCATCCGCCTGAGCCGAGGTGGCGAAACTGTCATCTAGAACCTGCAG
CACTGCCTCCGGGTTAATAAATTGGGATTTGCAGACGTATCGGTGAGCAG
TGAGCGCTGCCTTTGCAGCGGCAGCACGTGTGTTTTTCCACTTGGAGCCC
GCTGTGGTAAGGATCGCCTGATAGGCCAACGTGTGCACATGTATGCGCGA
GATAGAGCGACGCTTGGCATCGCTTGAGCTTCGGTCTTCGTAATCTTCAA
GGAGACTAATGAAAACCTGCCGCATCTGGTCAAGGGTGTGAGCTATGCGC
GGATTCCAGTCGGTGGCTAAGGTCGTCCGTCCGTGAGCAAGAACCTGCTG
CAGGTTAGAGAGCTCTTGTTCGTTCATTCCCAGGGAGTCTACGTAGGGCA
GTACAAAGTGTCGAAGCTGTTGAAGCAGCTGCAACTCCACGTAAGAAGCC
ATCTCGAAGTGGTTCAGAGTGCCCTGCGGCTGGCTGGTTAGTTGCCTTTG
TACTTGCTGCAGGCGCGCCTCTCGCTCACCAGACTTAAAGGTGAACATGT
CCATCATTTGCAGCCCGCTGACAACCAACAGCTGTGGCTGATACATCTTC
AAAGCATCCGTCAACTGCTCCACGGNCCGCAGATGCGGATTATTTCGATC
GTTGTGCAGAATGTAGCGATTGGCGCGAGGTGCACATATGGGCCCCATTT
GTCACAGCCTTGTAC
BS06827.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6650-PA | 1506 | CG6650-RA | 640..1506 | 883..17 | 4316 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:47:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6650-RB | 2304 | CG6650-RB | 760..1660 | 915..17 | 4444 | 99.7 | Minus |
CG6650-RC | 2573 | CG6650-RC | 760..1660 | 915..17 | 4444 | 99.7 | Minus |
CG6650-RA | 2863 | CG6650-RA | 1319..2219 | 915..17 | 4444 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:47:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14033035..14033683 | 915..269 | 3134 | 99.5 | Minus |
3L | 28110227 | 3L | 14033745..14033996 | 268..17 | 1260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:47:05 has no hits.
BS06827.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:15 Download gff for
BS06827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6650-PA | 606..1506 | 17..915 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:36:32 Download gff for
BS06827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6650-PA | 606..1506 | 17..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:46:58 Download gff for
BS06827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6650-RA | 1319..2219 | 17..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:10:02 Download gff for
BS06827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6650-RA | 1319..2219 | 17..915 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:10:02 Download gff for
BS06827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14033035..14033683 | 269..915 | 99 | -> | Minus |
3L | 14033745..14033996 | 17..268 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:46:58 Download gff for
BS06827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14026135..14026783 | 269..915 | 99 | -> | Minus |
arm_3L | 14026845..14027096 | 17..268 | 100 | | Minus |
BS06827.5prime Sequence
861 bp (776 high quality bases) assembled on 2005-12-04
> BS06827.5prime
GAAGTTATCAGTCGACATGACCGCCCTGCGATACATGGGATGGATCACCG
GCTGTTCCGTCCTAACGGCCTTTGTTTCCATAATTTGGCAGGCATTCATC
GCCCTGCAGACGCTTAACAGGACGACTGTCCTGCTCACCGGTCTCCTGGC
AATCGAGGGATCCCTGAAGCGGACCGCGTTGGAACCGGCACCCAAGGTGG
CCATCGGCTACGGAGCCTGCACGGACTTGCAGATAAACGCCACTGAATTT
CTGGATCGCTACTATGGGCGCCGGATTCCAGTCGCAGCAGCCACTACAGG
ATCTCGGGCGGTCGTGAACAACGAGGACGAGCTCTTGCAGTCCTTTGCCT
ATTACTTTCAGAACGGCGCTGCAGCGGAGCGAGTGATGGCAAACAGTACC
CTCTTCACACAGCTGGTGGGCTACGCCAAGGTGATGGACAAGGAGAGGAT
CAATTGGTACATGGGTGGTAACGCCCCACTGATGGCCGTGCGCTTTTTTA
TGGAGGGAGCTCAAGTGCTACTGGGCGCCCACATGTCTAGAAAGCTGCGG
CCACTGCTGCCAAAGGAGATTCGTCTGGCTGGTGACGAGATTCCAAACGA
TGACATCCATCTTATTCTGGAGTACAAGGCTGGTGACAAATGGGGCCCAT
ATGTGGCACCTCGCGCCAATCGCTACATTCTGCACAACGATCGAAATAAT
CCGCATCTGCGGGCCGTGGAGCAGTTGACGGATGCTTTGAAGATGTATCA
GCCACAGCTGTTGGTTGTCAGCGGGCTGCAAATGATGGACATGTTCACCT
TTAAGTCTGGTGAGCGAGAGGCGCGCCTGCAGCAAGTACAAAGGCAACTA
ACCAGCCAGCC
BS06827.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6650-PA | 1506 | CG6650-RA | 1..845 | 17..861 | 4225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:11:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6650-RB | 2304 | CG6650-RB | 155..999 | 17..861 | 4225 | 100 | Plus |
CG6650-RC | 2573 | CG6650-RC | 155..999 | 17..861 | 4225 | 100 | Plus |
CG6650-RA | 2863 | CG6650-RA | 714..1558 | 17..861 | 4225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:11:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14032957..14033274 | 544..861 | 1590 | 100 | Plus |
3L | 28110227 | 3L | 14032424..14032644 | 159..379 | 1105 | 100 | Plus |
3L | 28110227 | 3L | 14032733..14032898 | 379..544 | 830 | 100 | Plus |
3L | 28110227 | 3L | 14032228..14032370 | 17..159 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 11:11:16 has no hits.
BS06827.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:16 Download gff for
BS06827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6650-PA | 1..845 | 17..861 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:36:33 Download gff for
BS06827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6650-PA | 1..845 | 17..861 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:36:52 Download gff for
BS06827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6650-RA | 714..1558 | 17..861 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:45:03 Download gff for
BS06827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6650-RA | 714..1558 | 17..861 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:45:03 Download gff for
BS06827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14032228..14032370 | 17..159 | 100 | -> | Plus |
3L | 14032425..14032643 | 160..378 | 100 | -> | Plus |
3L | 14032733..14032897 | 379..543 | 100 | -> | Plus |
3L | 14032957..14033274 | 544..861 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:36:52 Download gff for
BS06827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14025328..14025470 | 17..159 | 100 | -> | Plus |
arm_3L | 14025525..14025743 | 160..378 | 100 | -> | Plus |
arm_3L | 14025833..14025997 | 379..543 | 100 | -> | Plus |
arm_3L | 14026057..14026374 | 544..861 | 100 | | Plus |
BS06827.complete Sequence
1538 bp (1538 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635635
> BS06827.complete
GAAGTTATCAGTCGACATGACCGCCCTGCGATACATGGGATGGATCACCG
GCTGTTCCGTCCTAACGGCCTTTGTTTCCATAATTTGGCAGGCATTCATC
GCCCTGCAGACGCTTAACAGGACGACTGTCCTGCTCACCGGTCTCCTGGC
AATCGAGGGATCCCTGAAGCGGACCGCGTTGGAACCGGCACCCAAGGTGG
CCATCGGCTACGGAGCCTGCACGGACTTGCAGATAAACGCCACTGAATTT
CTGGATCGCTACTATGGGCGCCGGATTCCAGTCGCAGCAGCCACTACAGG
ATCTCGGGCGGTCGTGAACAACGAGGACGAGCTCTTGCAGTCCTTTGCCT
ATTACTTTCAGAACGGCGCTGCAGCGGAGCGAGTGATGGCAAACAGTACC
CTCTTCACACAGCTGGTGGGCTACGCCAAGGTGATGGACAAGGAGAGGAT
CAATTGGTACATGGGTGGTAACGCCCCACTGATGGCCGTGCGCTTTTTTA
TGGAGGGAGCTCAAGTGCTACTGGGCGCCCACATGTCTAGAAAGCTGCGG
CCACTGCTGCCAAAGGAGATTCGTCTGGCTGGTGACGAGATTCCAAACGA
TGACATCCATCTTATTCTGGAGTACAAGGCTGGTGACAAATGGGGCCCAT
ATGTGGCACCTCGCGCCAATCGCTACATTCTGCACAACGATCGAAATAAT
CCGCATCTGCGGGCCGTGGAGCAGTTGACGGATGCTTTGAAGATGTATCA
GCCACAGCTGTTGGTTGTCAGCGGGCTGCAAATGATGGACATGTTCACCT
TTAAGTCTGGTGAGCGAGAGGCGCGCCTGCAGCAAGTACAAAGGCAACTA
ACCAGCCAGCCGCAGGGCACTCTGAACCACTTCGAGATGGCTTCTTACGT
GGAGTTGCAGCTGCTTCAACAGCTTCGACACTTTGTACTGCCCTACGTAG
ACTCCCTGGGAATGAACGAACAAGAGCTCTCTAACCTGCAGCAGGTTCTT
GCTCACGGACGGACGACCTTAGCCACCGACTGGAATCCGCGCATAGCTCA
CACCCTTGACCAGATGCGGCAGGTTTTCATTAGTCTCCTTGAAGATTACG
AAGACCGAAGCTCAAGCGATGCCAAGCGTCGCTCTATCTCGCGCATACAT
GTGCACACGTTGGCCTATCAGGCGATCCTTACCACAGCGGGCTCCAAGTG
GAAAAACACACGTGCTGCCGCTGCAAAGGCAGCGCTCACTGCTCACCGAT
ACGTCTGCAAATCCCAATTTATTAACCCGGAGGCAGTGCTGCAGGTTCTA
GATGACAGTTTCGCCACCTCGGCTCAGGCGGATGCGCCGCGAATGCGCAT
TGGTGCAGCCAGTCCCGTGCCCTGTTGGCGGGAGTATATCCAGTACGGTC
GTCACCGGCAACGGCTAGAGGTGGAAATCTGTGTGGCCCCGGTGCTGGTG
TGTCGCGAAGCCAGAAAAACGGCTGGGGCTGGCGACAACATCTCTGCCTC
CGGACTCGCGGCACAGTTGTAGAAGCTTTCTAGACCAT
BS06827.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:37:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6650-RB | 1506 | CG6650-PB | 1..1506 | 17..1522 | 7530 | 100 | Plus |
CG6650-RC | 1506 | CG6650-PC | 1..1506 | 17..1522 | 7530 | 100 | Plus |
CG6650-RA | 1506 | CG6650-PA | 1..1506 | 17..1522 | 7530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:37:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6650-RB | 2304 | CG6650-RB | 155..1660 | 17..1522 | 7530 | 100 | Plus |
CG6650-RC | 2573 | CG6650-RC | 155..1660 | 17..1522 | 7530 | 100 | Plus |
CG6650-RA | 2863 | CG6650-RA | 714..2219 | 17..1522 | 7530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:37:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14032957..14033683 | 544..1270 | 3635 | 100 | Plus |
3L | 28110227 | 3L | 14033745..14033996 | 1271..1522 | 1260 | 100 | Plus |
3L | 28110227 | 3L | 14032424..14032644 | 159..379 | 1105 | 100 | Plus |
3L | 28110227 | 3L | 14032733..14032898 | 379..544 | 830 | 100 | Plus |
3L | 28110227 | 3L | 14032228..14032370 | 17..159 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:37:20 has no hits.
BS06827.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:14 Download gff for
BS06827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6650-RA | 1..1506 | 17..1522 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:56 Download gff for
BS06827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6650-RA | 671..2176 | 17..1522 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:29 Download gff for
BS06827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6650-RA | 714..2219 | 17..1522 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:14 Download gff for
BS06827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6650-RA | 671..2176 | 17..1522 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:05 Download gff for
BS06827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6650-RA | 714..2219 | 17..1522 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:05 Download gff for
BS06827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14032425..14032643 | 160..378 | 100 | -> | Plus |
3L | 14032733..14032897 | 379..543 | 100 | -> | Plus |
3L | 14032228..14032370 | 17..159 | 100 | -> | Plus |
3L | 14032957..14033683 | 544..1270 | 100 | -> | Plus |
3L | 14033745..14033996 | 1271..1522 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:29 Download gff for
BS06827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14025328..14025470 | 17..159 | 100 | -> | Plus |
arm_3L | 14025525..14025743 | 160..378 | 100 | -> | Plus |
arm_3L | 14025833..14025997 | 379..543 | 100 | -> | Plus |
arm_3L | 14026057..14026783 | 544..1270 | 100 | -> | Plus |
arm_3L | 14026845..14027096 | 1271..1522 | 100 | | Plus |
BS06827.pep Sequence
Translation from 16 to 1521
> BS06827.pep
MTALRYMGWITGCSVLTAFVSIIWQAFIALQTLNRTTVLLTGLLAIEGSL
KRTALEPAPKVAIGYGACTDLQINATEFLDRYYGRRIPVAAATTGSRAVV
NNEDELLQSFAYYFQNGAAAERVMANSTLFTQLVGYAKVMDKERINWYMG
GNAPLMAVRFFMEGAQVLLGAHMSRKLRPLLPKEIRLAGDEIPNDDIHLI
LEYKAGDKWGPYVAPRANRYILHNDRNNPHLRAVEQLTDALKMYQPQLLV
VSGLQMMDMFTFKSGEREARLQQVQRQLTSQPQGTLNHFEMASYVELQLL
QQLRHFVLPYVDSLGMNEQELSNLQQVLAHGRTTLATDWNPRIAHTLDQM
RQVFISLLEDYEDRSSSDAKRRSISRIHVHTLAYQAILTTAGSKWKNTRA
AAAKAALTAHRYVCKSQFINPEAVLQVLDDSFATSAQADAPRMRIGAASP
VPCWREYIQYGRHRQRLEVEICVAPVLVCREARKTAGAGDNISASGLAAQ
L*
BS06827.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6650-PB | 501 | CG6650-PB | 1..501 | 1..501 | 2569 | 100 | Plus |
CG6650-PC | 501 | CG6650-PC | 1..501 | 1..501 | 2569 | 100 | Plus |
CG6650-PA | 501 | CG6650-PA | 1..501 | 1..501 | 2569 | 100 | Plus |