Clone BS06827 Report

Search the DGRC for BS06827

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:68
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG6650-RA
Protein status:BS06827.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06827.3prime Sequence

915 bp (823 high quality bases) assembled on 2005-12-04

> BS06827.3prime
ATGGTCTAGAAAGCTTCTACAACTGTGCCGCGAGTCCGGAGGCAGAGATG
TTGTCGCCAGCCCCAGCCGTTTTTCTGGCTTCGCGACACACCAGCACCGG
GGCCACACAGATTTCCACCTCTAGCCGTTGCCGGTGACGACCGTACTGGA
TATACTCCCGCCAACAGGGCACGGGACTGGCTGCACCAATGCGCATTCGC
GGCGCATCCGCCTGAGCCGAGGTGGCGAAACTGTCATCTAGAACCTGCAG
CACTGCCTCCGGGTTAATAAATTGGGATTTGCAGACGTATCGGTGAGCAG
TGAGCGCTGCCTTTGCAGCGGCAGCACGTGTGTTTTTCCACTTGGAGCCC
GCTGTGGTAAGGATCGCCTGATAGGCCAACGTGTGCACATGTATGCGCGA
GATAGAGCGACGCTTGGCATCGCTTGAGCTTCGGTCTTCGTAATCTTCAA
GGAGACTAATGAAAACCTGCCGCATCTGGTCAAGGGTGTGAGCTATGCGC
GGATTCCAGTCGGTGGCTAAGGTCGTCCGTCCGTGAGCAAGAACCTGCTG
CAGGTTAGAGAGCTCTTGTTCGTTCATTCCCAGGGAGTCTACGTAGGGCA
GTACAAAGTGTCGAAGCTGTTGAAGCAGCTGCAACTCCACGTAAGAAGCC
ATCTCGAAGTGGTTCAGAGTGCCCTGCGGCTGGCTGGTTAGTTGCCTTTG
TACTTGCTGCAGGCGCGCCTCTCGCTCACCAGACTTAAAGGTGAACATGT
CCATCATTTGCAGCCCGCTGACAACCAACAGCTGTGGCTGATACATCTTC
AAAGCATCCGTCAACTGCTCCACGGNCCGCAGATGCGGATTATTTCGATC
GTTGTGCAGAATGTAGCGATTGGCGCGAGGTGCACATATGGGCCCCATTT
GTCACAGCCTTGTAC

BS06827.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6650-PA 1506 CG6650-RA 640..1506 883..17 4316 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG6650-RB 2304 CG6650-RB 760..1660 915..17 4444 99.7 Minus
CG6650-RC 2573 CG6650-RC 760..1660 915..17 4444 99.7 Minus
CG6650-RA 2863 CG6650-RA 1319..2219 915..17 4444 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14033035..14033683 915..269 3134 99.5 Minus
3L 28110227 3L 14033745..14033996 268..17 1260 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:47:05 has no hits.

BS06827.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:15 Download gff for BS06827.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6650-PA 606..1506 17..915 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:36:32 Download gff for BS06827.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6650-PA 606..1506 17..915 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:46:58 Download gff for BS06827.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6650-RA 1319..2219 17..915 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:10:02 Download gff for BS06827.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6650-RA 1319..2219 17..915 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:10:02 Download gff for BS06827.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14033035..14033683 269..915 99 -> Minus
3L 14033745..14033996 17..268 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:46:58 Download gff for BS06827.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14026135..14026783 269..915 99 -> Minus
arm_3L 14026845..14027096 17..268 100   Minus

BS06827.5prime Sequence

861 bp (776 high quality bases) assembled on 2005-12-04

> BS06827.5prime
GAAGTTATCAGTCGACATGACCGCCCTGCGATACATGGGATGGATCACCG
GCTGTTCCGTCCTAACGGCCTTTGTTTCCATAATTTGGCAGGCATTCATC
GCCCTGCAGACGCTTAACAGGACGACTGTCCTGCTCACCGGTCTCCTGGC
AATCGAGGGATCCCTGAAGCGGACCGCGTTGGAACCGGCACCCAAGGTGG
CCATCGGCTACGGAGCCTGCACGGACTTGCAGATAAACGCCACTGAATTT
CTGGATCGCTACTATGGGCGCCGGATTCCAGTCGCAGCAGCCACTACAGG
ATCTCGGGCGGTCGTGAACAACGAGGACGAGCTCTTGCAGTCCTTTGCCT
ATTACTTTCAGAACGGCGCTGCAGCGGAGCGAGTGATGGCAAACAGTACC
CTCTTCACACAGCTGGTGGGCTACGCCAAGGTGATGGACAAGGAGAGGAT
CAATTGGTACATGGGTGGTAACGCCCCACTGATGGCCGTGCGCTTTTTTA
TGGAGGGAGCTCAAGTGCTACTGGGCGCCCACATGTCTAGAAAGCTGCGG
CCACTGCTGCCAAAGGAGATTCGTCTGGCTGGTGACGAGATTCCAAACGA
TGACATCCATCTTATTCTGGAGTACAAGGCTGGTGACAAATGGGGCCCAT
ATGTGGCACCTCGCGCCAATCGCTACATTCTGCACAACGATCGAAATAAT
CCGCATCTGCGGGCCGTGGAGCAGTTGACGGATGCTTTGAAGATGTATCA
GCCACAGCTGTTGGTTGTCAGCGGGCTGCAAATGATGGACATGTTCACCT
TTAAGTCTGGTGAGCGAGAGGCGCGCCTGCAGCAAGTACAAAGGCAACTA
ACCAGCCAGCC

BS06827.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6650-PA 1506 CG6650-RA 1..845 17..861 4225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:11:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG6650-RB 2304 CG6650-RB 155..999 17..861 4225 100 Plus
CG6650-RC 2573 CG6650-RC 155..999 17..861 4225 100 Plus
CG6650-RA 2863 CG6650-RA 714..1558 17..861 4225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:11:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14032957..14033274 544..861 1590 100 Plus
3L 28110227 3L 14032424..14032644 159..379 1105 100 Plus
3L 28110227 3L 14032733..14032898 379..544 830 100 Plus
3L 28110227 3L 14032228..14032370 17..159 715 100 Plus
Blast to na_te.dros performed on 2015-02-02 11:11:16 has no hits.

BS06827.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:16 Download gff for BS06827.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6650-PA 1..845 17..861 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:36:33 Download gff for BS06827.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6650-PA 1..845 17..861 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:36:52 Download gff for BS06827.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6650-RA 714..1558 17..861 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:45:03 Download gff for BS06827.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6650-RA 714..1558 17..861 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:45:03 Download gff for BS06827.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14032228..14032370 17..159 100 -> Plus
3L 14032425..14032643 160..378 100 -> Plus
3L 14032733..14032897 379..543 100 -> Plus
3L 14032957..14033274 544..861 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:36:52 Download gff for BS06827.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14025328..14025470 17..159 100 -> Plus
arm_3L 14025525..14025743 160..378 100 -> Plus
arm_3L 14025833..14025997 379..543 100 -> Plus
arm_3L 14026057..14026374 544..861 100   Plus

BS06827.complete Sequence

1538 bp (1538 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635635

> BS06827.complete
GAAGTTATCAGTCGACATGACCGCCCTGCGATACATGGGATGGATCACCG
GCTGTTCCGTCCTAACGGCCTTTGTTTCCATAATTTGGCAGGCATTCATC
GCCCTGCAGACGCTTAACAGGACGACTGTCCTGCTCACCGGTCTCCTGGC
AATCGAGGGATCCCTGAAGCGGACCGCGTTGGAACCGGCACCCAAGGTGG
CCATCGGCTACGGAGCCTGCACGGACTTGCAGATAAACGCCACTGAATTT
CTGGATCGCTACTATGGGCGCCGGATTCCAGTCGCAGCAGCCACTACAGG
ATCTCGGGCGGTCGTGAACAACGAGGACGAGCTCTTGCAGTCCTTTGCCT
ATTACTTTCAGAACGGCGCTGCAGCGGAGCGAGTGATGGCAAACAGTACC
CTCTTCACACAGCTGGTGGGCTACGCCAAGGTGATGGACAAGGAGAGGAT
CAATTGGTACATGGGTGGTAACGCCCCACTGATGGCCGTGCGCTTTTTTA
TGGAGGGAGCTCAAGTGCTACTGGGCGCCCACATGTCTAGAAAGCTGCGG
CCACTGCTGCCAAAGGAGATTCGTCTGGCTGGTGACGAGATTCCAAACGA
TGACATCCATCTTATTCTGGAGTACAAGGCTGGTGACAAATGGGGCCCAT
ATGTGGCACCTCGCGCCAATCGCTACATTCTGCACAACGATCGAAATAAT
CCGCATCTGCGGGCCGTGGAGCAGTTGACGGATGCTTTGAAGATGTATCA
GCCACAGCTGTTGGTTGTCAGCGGGCTGCAAATGATGGACATGTTCACCT
TTAAGTCTGGTGAGCGAGAGGCGCGCCTGCAGCAAGTACAAAGGCAACTA
ACCAGCCAGCCGCAGGGCACTCTGAACCACTTCGAGATGGCTTCTTACGT
GGAGTTGCAGCTGCTTCAACAGCTTCGACACTTTGTACTGCCCTACGTAG
ACTCCCTGGGAATGAACGAACAAGAGCTCTCTAACCTGCAGCAGGTTCTT
GCTCACGGACGGACGACCTTAGCCACCGACTGGAATCCGCGCATAGCTCA
CACCCTTGACCAGATGCGGCAGGTTTTCATTAGTCTCCTTGAAGATTACG
AAGACCGAAGCTCAAGCGATGCCAAGCGTCGCTCTATCTCGCGCATACAT
GTGCACACGTTGGCCTATCAGGCGATCCTTACCACAGCGGGCTCCAAGTG
GAAAAACACACGTGCTGCCGCTGCAAAGGCAGCGCTCACTGCTCACCGAT
ACGTCTGCAAATCCCAATTTATTAACCCGGAGGCAGTGCTGCAGGTTCTA
GATGACAGTTTCGCCACCTCGGCTCAGGCGGATGCGCCGCGAATGCGCAT
TGGTGCAGCCAGTCCCGTGCCCTGTTGGCGGGAGTATATCCAGTACGGTC
GTCACCGGCAACGGCTAGAGGTGGAAATCTGTGTGGCCCCGGTGCTGGTG
TGTCGCGAAGCCAGAAAAACGGCTGGGGCTGGCGACAACATCTCTGCCTC
CGGACTCGCGGCACAGTTGTAGAAGCTTTCTAGACCAT

BS06827.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:37:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG6650-RB 1506 CG6650-PB 1..1506 17..1522 7530 100 Plus
CG6650-RC 1506 CG6650-PC 1..1506 17..1522 7530 100 Plus
CG6650-RA 1506 CG6650-PA 1..1506 17..1522 7530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG6650-RB 2304 CG6650-RB 155..1660 17..1522 7530 100 Plus
CG6650-RC 2573 CG6650-RC 155..1660 17..1522 7530 100 Plus
CG6650-RA 2863 CG6650-RA 714..2219 17..1522 7530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:37:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14032957..14033683 544..1270 3635 100 Plus
3L 28110227 3L 14033745..14033996 1271..1522 1260 100 Plus
3L 28110227 3L 14032424..14032644 159..379 1105 100 Plus
3L 28110227 3L 14032733..14032898 379..544 830 100 Plus
3L 28110227 3L 14032228..14032370 17..159 715 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:37:20 has no hits.

BS06827.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:14 Download gff for BS06827.complete
Subject Subject Range Query Range Percent Splice Strand
CG6650-RA 1..1506 17..1522 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:56 Download gff for BS06827.complete
Subject Subject Range Query Range Percent Splice Strand
CG6650-RA 671..2176 17..1522 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:29 Download gff for BS06827.complete
Subject Subject Range Query Range Percent Splice Strand
CG6650-RA 714..2219 17..1522 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:14 Download gff for BS06827.complete
Subject Subject Range Query Range Percent Splice Strand
CG6650-RA 671..2176 17..1522 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:05 Download gff for BS06827.complete
Subject Subject Range Query Range Percent Splice Strand
CG6650-RA 714..2219 17..1522 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:05 Download gff for BS06827.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14032425..14032643 160..378 100 -> Plus
3L 14032733..14032897 379..543 100 -> Plus
3L 14032228..14032370 17..159 100 -> Plus
3L 14032957..14033683 544..1270 100 -> Plus
3L 14033745..14033996 1271..1522 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:29 Download gff for BS06827.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14025328..14025470 17..159 100 -> Plus
arm_3L 14025525..14025743 160..378 100 -> Plus
arm_3L 14025833..14025997 379..543 100 -> Plus
arm_3L 14026057..14026783 544..1270 100 -> Plus
arm_3L 14026845..14027096 1271..1522 100   Plus

BS06827.pep Sequence

Translation from 16 to 1521

> BS06827.pep
MTALRYMGWITGCSVLTAFVSIIWQAFIALQTLNRTTVLLTGLLAIEGSL
KRTALEPAPKVAIGYGACTDLQINATEFLDRYYGRRIPVAAATTGSRAVV
NNEDELLQSFAYYFQNGAAAERVMANSTLFTQLVGYAKVMDKERINWYMG
GNAPLMAVRFFMEGAQVLLGAHMSRKLRPLLPKEIRLAGDEIPNDDIHLI
LEYKAGDKWGPYVAPRANRYILHNDRNNPHLRAVEQLTDALKMYQPQLLV
VSGLQMMDMFTFKSGEREARLQQVQRQLTSQPQGTLNHFEMASYVELQLL
QQLRHFVLPYVDSLGMNEQELSNLQQVLAHGRTTLATDWNPRIAHTLDQM
RQVFISLLEDYEDRSSSDAKRRSISRIHVHTLAYQAILTTAGSKWKNTRA
AAAKAALTAHRYVCKSQFINPEAVLQVLDDSFATSAQADAPRMRIGAASP
VPCWREYIQYGRHRQRLEVEICVAPVLVCREARKTAGAGDNISASGLAAQ
L*

BS06827.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG6650-PB 501 CG6650-PB 1..501 1..501 2569 100 Plus
CG6650-PC 501 CG6650-PC 1..501 1..501 2569 100 Plus
CG6650-PA 501 CG6650-PA 1..501 1..501 2569 100 Plus