Clone Sequence Records
BS06829.3prime Sequence
845 bp (841 high quality bases) assembled on 2005-12-04
> BS06829.3prime
ATGGTCTAGAAAGCTTTTAACTCTCGTCATCGCTGCCGGCAGCCTGTCGC
ACCTTGGGACCTCCGGCGCGCTTGGCCATGATGATCTGGTCCACCTTCAA
GATGGTTGCGGCCGCGCCAACAGCGTACTTGAGACCCCAGAACTTGGACT
GGTACAGATCGAAGAGCTTTGCCTTCGTTGTGTCGATGGTGCTGGCCTTC
TCGGCCTCAATGTCGAAGCCGATTGTCTTTCCGGCCTCGTTGTTGTGGGC
CAAATACAACTGGTTGACGATTTCCGTGCCATTGATGCCGGAGTTCTCGG
CCAGAGCCTTGGGGAAAACTTCCAGCGCATTAGCGAACTTGCGCACGGCG
TACTGGTCCAGACCAGGCAGAGTATCAGCATAGGCGGACAGCTGGGTGGC
CAACTCGATCTCGGTGGCGCCAGCTCCGGGCAGATAGCGGCCATCCCGGG
TCAGGCACTTGAAGTTGTTAATAGCGTCATCCAGGGCACGCTCAATGTCA
TCCATGAAGTTGTCGGTAGCTCCACGGATCACCACGGTGGCAATGCGCGA
GTCCTTGCCCTCGTTCCTGAAGGCCACAATTGTGGTGTCTCCCAGTTCCT
CGATGCAAACTTTGTCGCAGTAGCCCAACTCCTCCTGACTGGGCGTGGTG
ATGCGCGGCAGGACAGTGGCGTTTACGGATCGGCTCAGGCGACGCAGGTC
GAACTTAGAGTTGAGACGCACGGCCATCAGACCGTATTTGTTAAGGAAGT
GCAGAGCCATGTCGCCAACCTTGCCGCCGGCCACAACCACCTTGACACCT
GCGTCGGCGATAGCCTTGATCTGGCTCTCAACAGGCTCTCTTCGC
BS06829.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8258-PA | 1641 | CG8258-RA | 829..1641 | 829..17 | 4065 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:39:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8258-RA | 1904 | CG8258-RA | 890..1719 | 845..17 | 4125 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:39:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8905029..8905581 | 17..569 | 2765 | 100 | Plus |
| 2R | 25286936 | 2R | 8905642..8905922 | 566..845 | 1355 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-01-31 16:39:41 has no hits.
BS06829.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:19 Download gff for
BS06829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8258-PA | 812..1641 | 17..845 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:36:38 Download gff for
BS06829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8258-PA | 812..1641 | 17..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:26:00 Download gff for
BS06829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8258-RA | 890..1721 | 13..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:43:57 Download gff for
BS06829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8258-RA | 890..1721 | 13..845 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:43:57 Download gff for
BS06829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8905027..8905578 | 13..566 | 99 | <- | Plus |
| 2R | 8905643..8905922 | 567..845 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:26:00 Download gff for
BS06829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4792532..4793083 | 13..566 | 99 | <- | Plus |
| arm_2R | 4793148..4793427 | 567..845 | 99 | | Plus |
BS06829.5prime Sequence
904 bp (789 high quality bases) assembled on 2005-12-04
> BS06829.5prime
GAAGTTATCAGTCGACATGGCTTTATCCGTTCCCAAGGCTCCCGGTGTGT
CGCAGATGCTGAAGGATGGCGCCCGGATGTACAGTGGGCTGGAGGAGGCG
GTGTTCCGCAACATCAGCGCCTGCAAGGAGTTTGCACAGACCATGCGCTC
TGCCTATGGGCCAAATGGCATGAACAAGATGATCATCAATCACATCGAGA
AGCAGTTCGTGACCAGCGATGCCGGCACCATCATGCGGGAGCTGGATGTT
GAGCATCCAGCCGCCAAGTTGATCGTCATGGCCAGCCAGATGCAGGATGC
CGAGGTGGGCGATGGTACAAACTTCGTGGTGGTGCTGGCCGGAGCTCTGT
TGGAGTCCGCTGAGGAGCTGCTGCGTCTAGGAATCACCACTGCCGAGATC
TCCGACGGCTATGAAAAGGCCTTGGAGAAGGCTCTGGAGATTCTGCCCAA
TCTGGTGAGCCACAAGATCGAGGACTATCGCAATGTGGAGAAGGTCAAGG
AGGTACTCCGCACATCGATCATGTCGAAGCAGTACGGCCAGGAGGACTTC
CTCAACGATTTGGTGAGCAAGGCCTGCGTCTCCATCTTGCCGGATGAGGG
CACCTTCAACGTGGACAACATTCGCATCTGTAAGATCTTGGGCAGCGGAC
TGACCAAGTCTGAGGTGGTTCGCGGCATGGTCTTCAAGCGCTTCGTAGAA
GGCGATGTGACCTATGCAGAGAAGGCCAAGATCGTGATTTTCTCCTGCCC
CGTCGATATTATCCAAACTGAGACCAAGGGCACAGTGCTGATNCAGTCGG
CCGACGAGCTATTGAGCTTTTCCTCCGGCGAAGAGAGCCTGTTGGAGAGC
CAGATCAAGGCTATCGCCGACGCANGTGTCAAGGTGGTTGTGGCCCGGCG
GCAG
BS06829.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8258-PA | 1641 | CG8258-RA | 1..879 | 17..895 | 4332 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:08:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8258-RA | 1904 | CG8258-RA | 79..964 | 17..903 | 4373 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:07:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8905855..8906674 | 895..76 | 4063 | 99.6 | Minus |
| 2R | 25286936 | 2R | 8906853..8906912 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:08:00 has no hits.
BS06829.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:20 Download gff for
BS06829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8258-PA | 1..886 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:36:39 Download gff for
BS06829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8258-PA | 1..886 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:13:17 Download gff for
BS06829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8258-RA | 79..964 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:40:05 Download gff for
BS06829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8258-RA | 79..964 | 17..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:40:05 Download gff for
BS06829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8905846..8906673 | 77..904 | 99 | <- | Minus |
| 2R | 8906853..8906912 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:13:17 Download gff for
BS06829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4793351..4794178 | 77..904 | 99 | <- | Minus |
| arm_2R | 4794358..4794417 | 17..76 | 100 | | Minus |
BS06829.complete Sequence
1673 bp (1673 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635636
> BS06829.complete
GAAGTTATCAGTCGACATGGCTTTATCCGTTCCCAAGGCTCCCGGTGTGT
CGCAGATGCTGAAGGATGGCGCCCGGATGTACAGTGGGCTGGAGGAGGCG
GTGTTCCGCAACATCAGCGCCTGCAAGGAGTTTGCACAGACCATGCGCTC
TGCCTATGGGCCAAATGGCATGAACAAGATGATCATCAATCACATCGAGA
AGCAGTTCGTGACCAGCGATGCCGGCACCATCATGCGGGAGCTGGATGTT
GAGCATCCAGCCGCCAAGTTGATCGTCATGGCCAGCCAGATGCAGGATGC
CGAGGTGGGCGATGGTACAAACTTCGTGGTGGTGCTGGCCGGAGCTCTGT
TGGAGTCCGCTGAGGAGCTGCTGCGTCTAGGAATCACCACTGCCGAGATC
TCCGACGGCTATGAAAAGGCCTTGGAGAAGGCTCTGGAGATTCTGCCCAA
TCTGGTGAGCCACAAGATCGAGGACTATCGCAATGTGGAGAAGGTCAAGG
AGGTACTCCGCACATCGATCATGTCGAAGCAGTACGGCCAGGAGGACTTC
CTCAACGATTTGGTGAGCAAGGCCTGCGTCTCCATCTTGCCGGATGAGGG
CACCTTCAACGTGGACAACATTCGCATCTGTAAGATCTTGGGCAGCGGAC
TGACCAAGTCTGAGGTGGTTCGCGGCATGGTCTTCAAGCGCTTCGTAGAA
GGCGATGTGACCTATGCAGAGAAGGCCAAGATCGTGATTTTCTCCTGCCC
CGTCGATATTATCCAAACTGAGACCAAGGGCACAGTGCTGATCAAGTCGG
CCGACGAGCTATTGAGCTTTTCCTCCGGCGAAGAGAGCCTGTTGGAGAGC
CAGATCAAGGCTATCGCCGACGCAGGTGTCAAGGTGGTTGTGGCCGGCGG
CAAGGTTGGCGACATGGCTCTGCACTTCCTTAACAAATACGGTCTGATGG
CCGTGCGTCTCAACTCTAAGTTCGACCTGCGTCGCCTGAGCCGATCCGTA
AACGCCACTGTCCTGCCGCGCATCACCACGCCCAGTCAGGAGGAGTTGGG
CTACTGCGACAAAGTTTGCATCGAGGAACTGGGAGACACCACAATTGTGG
CCTTCAGGAACGAGGGCAAGGACTCGCGCATTGCCACCGTGGTGATCCGT
GGAGCTACCGACAACTTCATGGATGACATTGAGCGTGCCCTGGATGACGC
TATTAACAACTTCAAGTGCCTGACCCGGGATGGCCGCTATCTGCCCGGAG
CTGGCGCCACCGAGATCGAGTTGGCCACCCAGCTGTCCGCCTATGCTGAT
ACTCTGCCTGGTCTGGACCAGTACGCCGTGCGCAAGTTCGCTAATGCGCT
GGAAGTTTTCCCCAAGGCTCTGGCCGAGAACTCCGGCATCAATGGCACGG
AAATCGTCAACCAGTTGTATTTGGCCCACAACAACGAGGCCGGAAAGACA
ATCGGCTTCGACATTGAGGCCGAGAAGGCCAGCACCATCGACACAACGAA
GGCAAAGCTCTTCGATCTGTACCAGTCCAAGTTCTGGGGTCTCAAGTACG
CTGTTGGCGCGGCCGCAACCATCTTGAAGGTGGACCAGATCATCATGGCC
AAGCGCGCCGGAGGTCCCAAGGTGCGACAGGCTGCCGGCAGCGATGACGA
GAGTTAAAAGCTTTCTAGACCAT
BS06829.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:02:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8258-RA | 1641 | CG8258-PA | 1..1641 | 17..1657 | 8205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:02:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8258-RA | 1904 | CG8258-RA | 79..1719 | 17..1657 | 8205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:02:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8905642..8906674 | 1108..76 | 5165 | 100 | Minus |
| 2R | 25286936 | 2R | 8905029..8905581 | 1657..1105 | 2765 | 100 | Minus |
| 2R | 25286936 | 2R | 8906853..8906912 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:02:32 has no hits.
BS06829.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:18 Download gff for
BS06829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8258-RA | 1..1641 | 17..1657 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:00 Download gff for
BS06829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8258-RA | 90..1732 | 17..1661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:38:53 Download gff for
BS06829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8258-RA | 79..1717 | 17..1655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:18 Download gff for
BS06829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8258-RA | 90..1732 | 17..1661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:31 Download gff for
BS06829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8258-RA | 79..1717 | 17..1655 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:31 Download gff for
BS06829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8905031..8905578 | 1108..1655 | 100 | <- | Minus |
| 2R | 8905643..8906673 | 77..1107 | 100 | <- | Minus |
| 2R | 8906853..8906912 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:38:53 Download gff for
BS06829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4792536..4793083 | 1108..1655 | 100 | <- | Minus |
| arm_2R | 4793148..4794178 | 77..1107 | 100 | <- | Minus |
| arm_2R | 4794358..4794417 | 17..76 | 100 | | Minus |
BS06829.pep Sequence
Translation from 16 to 1656
> BS06829.pep
MALSVPKAPGVSQMLKDGARMYSGLEEAVFRNISACKEFAQTMRSAYGPN
GMNKMIINHIEKQFVTSDAGTIMRELDVEHPAAKLIVMASQMQDAEVGDG
TNFVVVLAGALLESAEELLRLGITTAEISDGYEKALEKALEILPNLVSHK
IEDYRNVEKVKEVLRTSIMSKQYGQEDFLNDLVSKACVSILPDEGTFNVD
NIRICKILGSGLTKSEVVRGMVFKRFVEGDVTYAEKAKIVIFSCPVDIIQ
TETKGTVLIKSADELLSFSSGEESLLESQIKAIADAGVKVVVAGGKVGDM
ALHFLNKYGLMAVRLNSKFDLRRLSRSVNATVLPRITTPSQEELGYCDKV
CIEELGDTTIVAFRNEGKDSRIATVVIRGATDNFMDDIERALDDAINNFK
CLTRDGRYLPGAGATEIELATQLSAYADTLPGLDQYAVRKFANALEVFPK
ALAENSGINGTEIVNQLYLAHNNEAGKTIGFDIEAEKASTIDTTKAKLFD
LYQSKFWGLKYAVGAAATILKVDQIIMAKRAGGPKVRQAAGSDDES*
BS06829.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8258-PA | 546 | CG8258-PA | 1..546 | 1..546 | 2729 | 100 | Plus |
| T-cp1-PA | 557 | CG5374-PA | 23..534 | 31..526 | 551 | 28.8 | Plus |
| T-cp1-PB | 557 | CG5374-PB | 23..534 | 31..526 | 551 | 28.8 | Plus |
| CG5525-PA | 533 | CG5525-PA | 3..529 | 6..526 | 545 | 29.5 | Plus |
| Tcp-1eta-PA | 544 | CG8351-PA | 7..527 | 14..534 | 541 | 27.4 | Plus |
