Clone Sequence Records
BS06833.3prime Sequence
926 bp (826 high quality bases) assembled on 2005-12-04
> BS06833.3prime
ATGGTCTAGAAAGCTTTCACATGGACTCAGTTCCCTGCTCCAAAACCGCC
TGCCAATCGATGCCTTTGAAGAATGGATGAGCCTGCAATTGGTCGTAGTC
CAAACGTAGCTCCGGAGAAAGCTGCAGCAGTTGCTCCAGCAGATCCTTGG
CATGATCGGAAATCTCCAACGACTCACTAGGATACTGAACACAACCATAG
AGGTCCAGTTGCCCGGGATGCGTGACTTTGTAGGGAACTCCCAGCAGAAG
CTGATAGAGCACCACGCCGTAGCTCCACCAGTCCGAGCGAAAAGTGAGCG
GTCTTTCTGGTGCCACAAAGTGATTAGCCACTGCCTCCAAGTTCAGTGCC
TTGTGCACATAGTTGTCGTCCGAGGTTAGACCCTCGTTCTGATAGAAATA
CGTCAGGAGCAGCTGTCCCTTGGCGCCCAGTAAAATGTTGCCCATGTGCA
GATCGCGCAGAATAACGCCCTTGCCGTGCAGACTGTGTATGGCGATGGCC
AGTTCGCAAGCCCACTGACGCAGGCACTGCTCCGGAATGGGTTTACTTCG
GATGCGATTTTGATCCACCTTTTTATTTCTTTTGGGTGTAACGACTCCCG
CTTGCAAATTGCTCAGCGTGTTTGTTACGGACTTTAAAAGCTGCTGGGAG
CTGCGAACCAAATCGCTGACATCGCTGTCCGAAGTCAGAGGTGGCTCCTC
TGCCTCCTTCTCCTCCGGCTCCTGGTCCGAGGGAAAAAGCTCTCCATAAT
TGACACTCTTACTACTCGTGGGCGTGTAGCTCTGCAGGTAATCGTACAAC
ATGCCGCCCTCCGCCTGCCGCAGTAGCAGAAAAATCTTCTGCTCCGACTG
AAAGTAGGCCAGCAGTTGGACCCATGTAAGCACCTGCTGGGGCAGAAAGA
TGCTCTGGGTCAGCGAGTGACTGGGC
BS06833.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7156-PA | 2046 | CG7156-RA | 1191..2046 | 872..17 | 4280 | 100 | Minus |
| CG7156-PB | 1812 | CG7156-RB | 957..1812 | 872..17 | 4280 | 100 | Minus |
| CG7156-PA | 2046 | CG7156-RA | 1139..1183 | 924..880 | 225 | 100 | Minus |
| CG7156-PB | 1812 | CG7156-RB | 905..949 | 924..880 | 225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:46:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7156-RB | 2542 | CG7156-RB | 1163..2072 | 924..15 | 4505 | 99.8 | Minus |
| CG7156-RA | 2619 | CG7156-RA | 1240..2149 | 924..15 | 4505 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:46:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18240170..18240858 | 236..924 | 3355 | 99.1 | Plus |
| 3R | 32079331 | 3R | 18239890..18240110 | 15..235 | 1105 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:46:47 has no hits.
BS06833.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:27 Download gff for
BS06833.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7156-PB | 903..1812 | 17..926 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:36:49 Download gff for
BS06833.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7156-PB | 903..1812 | 17..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:45:28 Download gff for
BS06833.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7156-RA | 1263..2174 | 15..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:48 Download gff for
BS06833.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7156-RA | 1238..2149 | 15..926 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:48 Download gff for
BS06833.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18239890..18240110 | 15..235 | 100 | <- | Plus |
| 3R | 18240170..18240859 | 236..926 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:45:28 Download gff for
BS06833.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14065612..14065832 | 15..235 | 100 | <- | Plus |
| arm_3R | 14065892..14066581 | 236..926 | 99 | | Plus |
BS06833.5prime Sequence
896 bp (847 high quality bases) assembled on 2005-12-04
> BS06833.5prime
GAAGTTATCAGTCGACATGACTCTCAACCTGGGCGGCTGGATCCACAGCT
TCACAGTGACGGACACCCAGGAGCACAAGGGCGGGTACACAATATACAAA
ATCACCTCGATTGTCTTCCCAAGGTCGGTACCTCAAGCTCTGACCTGCCT
GGTGGTGTGGAAACGGTTCCACGATGTCAAGCGGCTGCATCGCGAGCTTA
GCCGGCGCCACAAGAGTCTCCAACTACCCGGCAAGTTGCCAGTGCCCACA
GATAGCACATATTTCAAGAGATTCGATGCGGCAGTCATCCAACGGCGTAA
GGAGTACATCCTGCAATTATTAGACTTTGCAGCGCAGCATCCGGCGCTGT
ACAAGTGCTCAACCTTCACACAGTTCTTCCAGGAGACACCCTCGCCAAAC
GGATCGCCACTTAAGAAGCTATATGTGGAGCGATCCCTGCGGCTGCAGAC
GGAAGACAATGGCTGCGGAAGTGGCGGTTCGGAAACAGGAACTTGCGCTG
GTGCCATAGCCGACATTTGCGATAAACTAGACTTGCCCTATGACCCACAC
GACGCGGGGGGCATCACGCCTCTAGATCCGCGCTGTGATAAGGAGCAAAC
GAACAACGAATCCCAGGCCAAAGAAACTGAAATCGAATTAGAAACGAAAC
AGGAGCCCAAGACAGACGTAGCGCTGACCAAGAGGGATTATCTCCGCCTT
CTGACGCCCATGGCTTCCATAGAAAGCGACGACAGCGACTACATATATGA
GGCGGCTCTAGAGTTCAGTCATGCCGTCCAAGCGGAGGTTAACCTGGAGT
ATGCCGAAGCCCACGAGAGGTACAAGCATGGTGTGGACCTGCTGCTCATG
GGGCCAAGCAGGATAGCAGTGAGGAGCGTAGATTTATAGCCCAGGC
BS06833.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7156-PA | 2046 | CG7156-RA | 1..832 | 17..848 | 4160 | 100 | Plus |
| CG7156-PB | 1812 | CG7156-RB | 124..598 | 374..848 | 2375 | 100 | Plus |
| CG7156-PB | 1812 | CG7156-RB | 1..123 | 174..296 | 615 | 100 | Plus |
| CG7156-PA | 2046 | CG7156-RA | 833..876 | 848..891 | 220 | 100 | Plus |
| CG7156-PB | 1812 | CG7156-RB | 599..642 | 848..891 | 220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:33:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7156-RA | 2619 | CG7156-RA | 102..982 | 17..896 | 4365 | 99.8 | Plus |
| CG7156-RB | 2542 | CG7156-RB | 382..905 | 374..896 | 2580 | 99.6 | Plus |
| CG7156-RB | 2542 | CG7156-RB | 102..381 | 17..296 | 1400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:33:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18241116..18241900 | 896..113 | 3860 | 99.7 | Minus |
| 3R | 32079331 | 3R | 18241961..18242058 | 114..17 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:33:02 has no hits.
BS06833.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:29 Download gff for
BS06833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7156-PA | 1..881 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:36:50 Download gff for
BS06833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7156-PA | 1..881 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:41:17 Download gff for
BS06833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7156-RA | 123..1007 | 9..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:01:39 Download gff for
BS06833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7156-RA | 98..982 | 9..896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:01:39 Download gff for
BS06833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18241116..18241900 | 113..896 | 99 | <- | Minus |
| 3R | 18241963..18242062 | 9..112 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:41:17 Download gff for
BS06833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14066838..14067622 | 113..896 | 99 | <- | Minus |
| arm_3R | 14067685..14067784 | 9..112 | 96 | | Minus |
BS06833.complete Sequence
2078 bp assembled on 2012-04-25
GenBank Submission: KX804779
> BS06833.complete
GAAGTTATCAGTCGACATGACTCTCAACCTGGGCGGCTGGATCCACAGCT
TCACAGTGACGGACACCCAGGAGCACAAGGGCGGGTACACAATATACAAA
ATCACCTCGATTGTCTTCCCAAGGTCGGTACCTCAAGCTCTGACCTGCCT
GGTGGTGTGGAAACGGTTCCACGATGTCAAGCGGCTGCATCGCGAGCTTA
GCCGGCGCCACAAGAGTCTCCAACTACCCGGCAAGTTGCCAGTGCCCACA
GATAGCACATATTTCAAGAGATTCGATGCGGCAGTCATCCAACGGCGTAA
GGAGTACATCCTGCAATTATTAGACTTTGCAGCGCAGCATCCGGCGCTGT
ACAAGTGCTCAACCTTCACACAGTTCTTCCAGGAGACACCCTCGCCAAAC
GGATCGCCACTTAAGAAGCTATATGTGGAGCGATCCCTGCGGCTGCAGAC
GGAAGACAATGGCTGCGGAAGTGGCGGTTCGGAAACAGGAACTTGCGCTG
GTGCCATAGCCGACATTTGCGATAAACTAGACTTGCCCTATGACCCACAC
GACGCGGGGGGCATCACGCCTCTAGATCCGCGCTGTGATAAGGAGCAAAC
GAACAACGAATCCCAGGCCAAAGAAACTGAAATCGAATTAGAAACGAAAC
AGGAGCCCAAGACAGACGTAGCGCTGACCAAGAGGGATTATCTCCGCCTT
CTGACGCCCATGGCTTCCATAGAAAGCGACGACAGCGACTACATATATGA
GGCGGCTCTAGAGTTCAGTCATGCCGTCCAAGCGGAGGTTAACCTGGAGT
ATGCCGAAGCCCACGAGAGGTACAAGCATGGTGTGGACCTGCTGCTCAAT
GGGGCCAAGCAGGATAGCAGTGAGGAGCGTAGATTTATAGCCAAGGCGAA
GATAGCCAAATACTTGGCGCGGGCTGAGGAGATTCACGCCAATTTCCTGG
CCAACGATTGTCCGACGAAGAAGCTGCAGTTCCAGCTCTCGCTGGACACG
ACAGACGGCGGTAGCGTGAGCCATTTGGAGTGCCCCTGGAATCAGTTGGC
ACGCTACAAGGTGCTGCAGATTCTCCAGGACCGTGTGATGCAGGTGCAGT
GTGTGACGAAATCCCAGCAGCCGGCTGCCATTATGAAGGGCGTCGAGAAG
CCGGCCAGTCACTCGCTGACCCAGAGCATCTTTCTGCCCCAGCAGGTGCC
TTACATGGTCCAACTGCTGGCCTACTTTCAGTCGGAGCAGAAGATTTTTC
TGCTACTGCGGCAGGCGGAGGGCGGCATGTTGTACGATTACCTGCAGAGC
TACACGCCCACGAGTAGTAAGAGTGTCAATTATGGAGAGCTTTTTCCCTC
GGACCAGGAGCCGGAGGAGAAGGAGGCAGAGGAGCCACCTCTGACTTCGG
ACAGCGATGTCAGCGATTTGGTTCGCAGCTCCCAGCAGCTTTTAAAGTCC
GTAACAAACACGCTGAGCAATTTGCAAGCGGGAGTCGTTACACCCAAAAG
AAATAAAAAGGTGGATCAAAATCGCATCCGAAGTAAACCCATTCCGGAGC
AGTGCCTGCGTCAGTGGGCTTGCGAACTGGCCATCGCCATACACAGTCTG
CACGGCAAGGGCGTTATTCTGCGCGATCTGCACATGGGCAACATTTTACT
GGGCGCCAAGGGACAGCTGCTCCTGACGTATTTCTATCAGAACGAGGGTC
TAACCTCGGACGACAACTATGTGCACAAGGCACTGAACTTGGAGGCAGTG
GCTAATCACTTTGTGGCACCAGAAAGACCGCTCACTTTTCGCTCGGACTG
GTGGAGCTACGGCGTGGTGCTCTATCAGCTTCTGCTGGGAGTTCCCTACA
AAGTCACGCATCCCGGGCAACTGGACCTCTATGGTTGTGTTCAGTATCCT
AGTGAGTCGTTGGAGATTTCCGATCATGCCAAGGATCTGCTGGAGCAACT
GCTGCAGCTTTCTCCGGAGCTACGTTTGGACTACGACCAATTGCAGGCTC
ATCCATTCTTCAAAGGCATCGATTGGCAGGCGGTTTTGGAGCAGGGAACT
GAGTCCATGTGAAAGCTTTCTAGACCAT
BS06833.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:06:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7156-RA | 2046 | CG7156-PA | 1..2046 | 17..2062 | 10230 | 100 | Plus |
| CG7156-RB | 321 | CG7156-PB | 1..280 | 17..296 | 1400 | 100 | Plus |
| CG7156-RB | 321 | CG7156-PB | 281..321 | 374..414 | 205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:06:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7156-RA | 2619 | CG7156-RA | 102..2149 | 17..2064 | 10240 | 100 | Plus |
| CG7156-RB | 2542 | CG7156-RB | 382..2072 | 374..2064 | 8455 | 100 | Plus |
| CG7156-RB | 2542 | CG7156-RB | 102..381 | 17..296 | 1400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:06:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18240170..18241900 | 1843..113 | 8655 | 100 | Minus |
| 3R | 32079331 | 3R | 18239890..18240110 | 2064..1844 | 1105 | 100 | Minus |
| 3R | 32079331 | 3R | 18241961..18242058 | 114..17 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:06:38 has no hits.
BS06833.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:28:49 Download gff for
BS06833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7156-RA | 123..2174 | 9..2064 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:19 Download gff for
BS06833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7156-RA | 127..2171 | 17..2061 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:25 Download gff for
BS06833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7156-RA | 127..2171 | 17..2061 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:16:18 Download gff for
BS06833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7156-RA | 127..2171 | 17..2061 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:57:17 Download gff for
BS06833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7156-RA | 102..2146 | 17..2061 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:57:17 Download gff for
BS06833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18239893..18240110 | 1844..2061 | 100 | <- | Minus |
| 3R | 18240170..18241900 | 113..1843 | 100 | <- | Minus |
| 3R | 18241963..18242058 | 17..112 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:25 Download gff for
BS06833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14067685..14067780 | 17..112 | 100 | | Minus |
| arm_3R | 14065615..14065832 | 1844..2061 | 100 | <- | Minus |
| arm_3R | 14065892..14067622 | 113..1843 | 100 | <- | Minus |
BS06833.pep Sequence
Translation from 16 to 2061
> BS06833.pep
MTLNLGGWIHSFTVTDTQEHKGGYTIYKITSIVFPRSVPQALTCLVVWKR
FHDVKRLHRELSRRHKSLQLPGKLPVPTDSTYFKRFDAAVIQRRKEYILQ
LLDFAAQHPALYKCSTFTQFFQETPSPNGSPLKKLYVERSLRLQTEDNGC
GSGGSETGTCAGAIADICDKLDLPYDPHDAGGITPLDPRCDKEQTNNESQ
AKETEIELETKQEPKTDVALTKRDYLRLLTPMASIESDDSDYIYEAALEF
SHAVQAEVNLEYAEAHERYKHGVDLLLNGAKQDSSEERRFIAKAKIAKYL
ARAEEIHANFLANDCPTKKLQFQLSLDTTDGGSVSHLECPWNQLARYKVL
QILQDRVMQVQCVTKSQQPAAIMKGVEKPASHSLTQSIFLPQQVPYMVQL
LAYFQSEQKIFLLLRQAEGGMLYDYLQSYTPTSSKSVNYGELFPSDQEPE
EKEAEEPPLTSDSDVSDLVRSSQQLLKSVTNTLSNLQAGVVTPKRNKKVD
QNRIRSKPIPEQCLRQWACELAIAIHSLHGKGVILRDLHMGNILLGAKGQ
LLLTYFYQNEGLTSDDNYVHKALNLEAVANHFVAPERPLTFRSDWWSYGV
VLYQLLLGVPYKVTHPGQLDLYGCVQYPSESLEISDHAKDLLEQLLQLSP
ELRLDYDQLQAHPFFKGIDWQAVLEQGTESM*
BS06833.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:20:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7156-PA | 681 | CG7156-PA | 1..681 | 1..681 | 3560 | 100 | Plus |
| CG7156-PB | 106 | CG7156-PB | 1..93 | 1..93 | 496 | 100 | Plus |
| aPKC-PI | 511 | CG42783-PI | 218..461 | 459..676 | 205 | 26.8 | Plus |
| aPKC-PB | 526 | CG10261-PB | 218..461 | 459..676 | 205 | 26.8 | Plus |
| aPKC-PD | 608 | CG10261-PD | 300..543 | 459..676 | 205 | 26.8 | Plus |
