Clone Sequence Records
BS06834.3prime Sequence
925 bp (855 high quality bases) assembled on 2005-12-04
> BS06834.3prime
ATGGTCTAGAAAGCTTCTAACCCATCATGCCCTTGCTGCGCTTGAAGGCT
GCTCCTGCCTTGCGATTATGATTGGCACGAGTGGACTTGTGGGCCTCCTT
TTGGCCACGACTGCGCTGCGTCTGCTGGGACTGCCCCTGGCCCTTGGGTG
CTCCGACCACAGAGGGACTCGCTCCATGTCCACCACTCTTTTGGCCGTAT
TTGGATAACTGGCGCTGCTCGTAGCGGGCGCGTATCACCTCTGGATTCTC
GCAAAAGTCTCTGTTGGTGCGCATCGACGGCTCCGGGTCCGAATGGCCGC
CGGAGCTCTCCTCGTCGTCGTTCTCCAGCTCATCCTGTGCGTTGTACGCC
GAACTGGAGGCGGCTTCCTGGAGCCTTCCGCGCAGCAGACTCACAGGCGG
CGCTTGACCCTCGTTTTGAGCCTCGTAGCTGTCGTCGTACTCGTCGTCAT
ACTCGCCCCTCTCGAGCGTGGTCTCCTCGACCATGGCGTACTTCTGGTAG
CGCTCCTTTAGCTGCTTCAGGTCGCGCTTGTCGTCCAGCAACTGTTCCGC
ATTGCGTGGCGCTCCCGGCAATCCCTTGCCCTGCTTGATAATGCACTCGG
GCTGGTCCCGCGTCAGCACGTCGTAGCGATCGCCGTCGTGAACGTTGAAG
TGTCGCAGGCCCGTTTGGCGTTGCTGTTTGTCCTGCGGGTCGGGCGGAAT
GTACACCTCCTGTCGGTCCATCTGCGCTAGATCCGGCGGCAGATTGTCGT
CCAGAATGGCGGCAATGACCTGCTCGCTGTTATCGTAGCGGATGAGGAGG
CGCCTTATGAAGCCACTGCCCAGATCGGGCAGCACTTCCAGCACGGCGGT
GACTTCCNNAGTCATGTCCCTTGTCGTTCCGTTGGGCGTCGGCGACGGCT
GTGGAGAAGTGCGCGAGGAGTCGCC
BS06834.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2701-PA | 2208 | CG2701-RA | 1368..2208 | 857..17 | 4205 | 100 | Minus |
CG2701-PA | 2208 | CG2701-RA | 1300..1361 | 925..864 | 285 | 98.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:22:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2701-RA | 2425 | CG2701-RA | 1452..2360 | 925..17 | 4474 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:22:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2717703..2718611 | 17..925 | 4448 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:22:06 has no hits.
BS06834.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:29 Download gff for
BS06834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2701-PA | 1300..2208 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:36:51 Download gff for
BS06834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2701-PA | 1300..2208 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:42:59 Download gff for
BS06834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2701-RA | 1452..2362 | 13..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:51:18 Download gff for
BS06834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2701-RA | 1452..2362 | 13..925 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:51:18 Download gff for
BS06834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2717699..2718611 | 13..925 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:42:59 Download gff for
BS06834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2611732..2612644 | 13..925 | 99 | | Plus |
BS06834.5prime Sequence
928 bp (776 high quality bases) assembled on 2005-12-04
> BS06834.5prime
GAAGTTATCAGTCGACATGCTGGACAACGACACCAGCAACAACAACAACT
GCAACCCACAGAATCTGCCACTGGACGAACTCAAGTTTGCACTTTCCGGC
AAGGATGGGGTGCGCAGGAACGTTCCGGCGCTGGACGAGCACTGGGTGCA
GCGCGAGAAGCCCTTTGCCAGCTATTTGTGCATGTTGAGCTCCTATGGAC
GCCTAAAATCCGGAGCTGCACTGGAGGAATGGACCTTCGCGGCGAACAAT
TTCCGTGGGGACATGGAGTTCCTGCTGAGCCTGACGCAGCACGAATTCTG
GTCCTACATGGTGTACGATGAATCGGCCATGGCGGCCGTTGTCACATTCC
TGCAGCGCGCTAATCCCTACTACAGACAGACAGATGTCAGCCGGGACAAG
GAGTTGGACCAGGCCCATCTGCTGTACGGACAGCTGCTCGATCTCGTCGT
GCGTCTGATAATGCGACTGTGCACCGGTAAGGAATCGGACTCGGAGTGGA
TTAGCCCGAAGCAACACGGCAGCCTGCTGTACAGCAACTACCTGATCTCT
GTGCCACTGCTCTTTGATCTGCTCATCGCTGTTGGCGATGCGGAGCCGGA
GAACGTGGAACTGTTGCGCCAGATCTTCGACAAGGTGCTGGAAGTGCAGC
CGGAGTACCAAAAGGATCTGAAGGAGGCGCTGATCTTCTACGAGAGCGCT
TTCCTCAGCATGCAGATCCAGGTGGAGAACGAGGGCTGCGAAGGTGCTGG
CGGCGGGGCGTCTCTGGACGTCGACTTGGAGACGCCCTACGACGATGTGG
TGCTCTTCGCCATGGACTGCGCATACACGCTGCGCCTGCTGCTGCTCCTC
TGTCCCCAGCTATTGGAAACCATCGAACAGCTGCGTTTGGCCCCAAGCAT
GCCAATTTCTATGACATGACTGTGCCCC
BS06834.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2701-PA | 2208 | CG2701-RA | 1..884 | 17..900 | 4420 | 100 | Plus |
CG2701-PA | 2208 | CG2701-RA | 885..912 | 900..927 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:24:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2701-RA | 2425 | CG2701-RA | 149..1064 | 13..927 | 4555 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:23:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2719165..2719767 | 897..295 | 3015 | 100 | Minus |
X | 23542271 | X | 2719827..2719988 | 294..133 | 810 | 100 | Minus |
X | 23542271 | X | 2720058..2720179 | 134..13 | 610 | 100 | Minus |
Blast to na_te.dros performed 2015-02-09 22:23:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2391..2451 | 25..80 | 114 | 68.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2801..2861 | 24..85 | 109 | 66.1 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7944..7988 | 11..55 | 108 | 71.1 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 9388..9432 | 11..55 | 108 | 71.1 | Plus |
BS06834.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:30 Download gff for
BS06834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2701-PA | 1..912 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:36:52 Download gff for
BS06834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2701-PA | 1..912 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:25:01 Download gff for
BS06834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2701-RA | 149..1064 | 13..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:44:08 Download gff for
BS06834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2701-RA | 149..1064 | 13..928 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:44:08 Download gff for
BS06834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2719060..2719091 | 898..928 | 93 | <- | Minus |
X | 2719165..2719767 | 295..897 | 100 | <- | Minus |
X | 2719827..2719987 | 134..294 | 100 | <- | Minus |
X | 2720059..2720179 | 13..133 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:25:01 Download gff for
BS06834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2613093..2613124 | 898..928 | 93 | <- | Minus |
arm_X | 2613198..2613800 | 295..897 | 100 | <- | Minus |
arm_X | 2613860..2614020 | 134..294 | 100 | <- | Minus |
arm_X | 2614092..2614212 | 13..133 | 100 | | Minus |
BS06834.complete Sequence
2240 bp assembled on 2008-08-14
GenBank Submission: FJ635637
> BS06834.complete
GAAGTTATCAGTCGACATGCTGGACAACGACACCAGCAACAACAACAACT
GCAACCCACAGAATCTGCCACTGGACGAACTCAAGTTTGCACTTTCCGGC
AAGGATGGGGTGCGCAGGAACGTTCCGGCGCTGGACGAGCACTGGGTGCA
GCGCGAGAAGCCCTTTGCCAGCTATTTGTGCATGTTGAGCTCCTATGGAC
GCCTAAAATCCGGAGCTGCACTGGAGGAATGGACCTTCGCGGCGAACAAT
TTCCGTGGGGACATGGAGTTCCTGCTGAGCCTGACGCAGCACGAATTCTG
GTCCTACATGGTGTACGATGAATCGGCCATGGCGGCCGTTGTCACATTCC
TGCAGCGCGCTAATCCCTACTACAGACAGACAGATGTCAGCCGGGACAAG
GAGTTGGACCAGGCCCATCTGCTGTACGGACAGCTGCTCGATCTCGTCGT
GCGTCTGATAATGCGACTGTGCACCGGTAAGGAATCGGACTCGGAGTGGA
TTAGCCCGAAGCAACACGGCAGCCTGCTGTACAGCAACTACCTGATCTCT
GTGCCACTGCTCTTTGATCTGCTCATCGCTGTTGGCGATGCGGAGCCGGA
GAACGTGGAACTGTTGCGCCAGATCTTCGACAAGGTGCTGGAAGTGCAGC
CGGAGTACCAAAAGGATCTGAAGGAGGCGCTGATCTTCTACGAGAGCGCT
TTCCTCAGCATGCAGATCCAGGTGGAGAACGAGGGCTGCGAAGGTGCTGG
CGGCGGGGCGTCTCTGGACGTCGACTTGGAGACGCCCTACGACGATGTGG
TGCTCTTCGCCATGGACTGCGCATACACGCTGCGCCTGCTGCTGCTCCTC
TGTCCCCAGCTATTGGAAACCATCGAACAGCTGCGTTTGGCCCCAAGCAT
TGCCAATTTCTATGACATGACTGTGCCCATGTTGTACAAGAACATCTACT
TGGTGAACCCGGGTGCGAGTTCGCTGCGCTGGCTAAATGAGACGCGCCAG
CAATATATCTTCATCGTTCGTCGCGTGGTCAGCCTGCAGATGGAGTCGGG
ACGGGGACAGCAGCTGGTGGAAGTGATGCAGGAGTGCCTTTCCGCCCAGA
ACTTCGTTGTGGACTACCAGCGGCAGTTTCCGCTGGAGCACGACATGAAG
CTGCTGATCCAACGTTGCCCAAATATCAAGAACTACGAGGTGGACTTCGT
GGTGTCCGGTTATCAGAAGGCACTGGCCAGCTGCCCCAACGGCATAATGG
CCGACGATATGGCCAGTAACGGTGTCCAAGTTACGGGGAACGTCCAGGAC
GAGGAATTCAAGAACGGCGACTCCTCGCGCACTTCTCCACAGCCGTCGCC
GACGGCCAACGGAACGACAAGGGACATTGACTTGGAAGTCACCGCCGTGC
TGGAAGTGCTGCCCGATCTGGGCAGTGGCTTCATAAGGCGCCTCCTCATC
CGCTACGATAACAGCGAGCAGGTCATTGCCGCCATTCTGGACGACAATCT
GCCGCCGGATCTAGCGCAGATGGACCGACAGGAGGTGTACATTCCGCCCG
ACCCGCAGGACAAACAGCAACGCCAAACGGGCCTGCGACACTTCAACGTT
CACGACGGCGATCGCTACGACGTGCTGACGCGGGACCAGCCCGAGTGCAT
TATCAAGCAGGGCAAGGGATTGCCGGGAGCGCCACGCAATGCGGAACAGT
TGCTGGACGACAAGCGCGACCTGAAGCAGCTAAAGGAGCGCTACCAGAAG
TACGCCATGGTCGAGGAGACCACGCTCGAGAGGGGCGAGTATGACGACGA
GTACGACGACAGCTACGAGGCTCAAAACGAGGGTCAAGCGCCGCCTGTGA
GTCTGCTGCGCGGAAGGCTCCAGGAAGCCGCCTCCAGTTCGGCGTACAAC
GCACAGGATGAGCTGGAGAACGACGACGAGGAGAGCTCCGGCGGCCATTC
GGACCCGGAGCCGTCGATGCGCACCAACAGAGACTTTTGCGAGAATCCAG
AGGTGATACGCGCCCGCTACGAGCAGCGCCAGTTATCCAAATACGGCCAA
AAGAGTGGTGGACATGGAGCGAGTCCCTCTGTGGTCGGAGCACCCAAGGG
CCAGGGGCAGTCCCAGCAGACGCAGCGCAGTCGTGGCCAAAAGGAGGCCC
ACAAGTCCACTCGTGCCAATCATAATCGCAAGGCAGGAGCAGCCTTCAAG
CGCAGCAAGGGCATGATGGGTTAGAAGCTTTCTAGACCAT
BS06834.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:18:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2701-RA | 2208 | CG2701-PA | 1..2208 | 17..2224 | 11040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:18:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2701-RA | 2425 | CG2701-RA | 149..2360 | 13..2224 | 11060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:18:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2717703..2718750 | 2224..1177 | 5240 | 100 | Minus |
X | 23542271 | X | 2719165..2719767 | 897..295 | 3015 | 100 | Minus |
X | 23542271 | X | 2718813..2719093 | 1176..896 | 1405 | 100 | Minus |
X | 23542271 | X | 2719827..2719988 | 294..133 | 810 | 100 | Minus |
X | 23542271 | X | 2720058..2720179 | 134..13 | 610 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 13:18:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2391..2451 | 25..80 | 114 | 68.9 | Plus |
BS06834.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:50:58 Download gff for
BS06834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2701-RA | 147..2360 | 13..2228 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:44 Download gff for
BS06834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2701-RA | 153..2360 | 17..2224 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:10:58 Download gff for
BS06834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2701-RA | 151..2358 | 17..2224 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:24 Download gff for
BS06834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2701-RA | 153..2360 | 17..2224 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:24 Download gff for
BS06834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2718813..2719091 | 898..1176 | 100 | <- | Minus |
X | 2717703..2718750 | 1177..2224 | 100 | <- | Minus |
X | 2719165..2719767 | 295..897 | 100 | <- | Minus |
X | 2719827..2719987 | 134..294 | 100 | <- | Minus |
X | 2720059..2720175 | 17..133 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:44 Download gff for
BS06834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2611736..2612783 | 1177..2224 | 100 | <- | Minus |
arm_X | 2612846..2613124 | 898..1176 | 100 | <- | Minus |
arm_X | 2613198..2613800 | 295..897 | 100 | <- | Minus |
arm_X | 2613860..2614020 | 134..294 | 100 | <- | Minus |
arm_X | 2614092..2614208 | 17..133 | 100 | | Minus |
BS06834.pep Sequence
Translation from 16 to 2223
> BS06834.pep
MLDNDTSNNNNCNPQNLPLDELKFALSGKDGVRRNVPALDEHWVQREKPF
ASYLCMLSSYGRLKSGAALEEWTFAANNFRGDMEFLLSLTQHEFWSYMVY
DESAMAAVVTFLQRANPYYRQTDVSRDKELDQAHLLYGQLLDLVVRLIMR
LCTGKESDSEWISPKQHGSLLYSNYLISVPLLFDLLIAVGDAEPENVELL
RQIFDKVLEVQPEYQKDLKEALIFYESAFLSMQIQVENEGCEGAGGGASL
DVDLETPYDDVVLFAMDCAYTLRLLLLLCPQLLETIEQLRLAPSIANFYD
MTVPMLYKNIYLVNPGASSLRWLNETRQQYIFIVRRVVSLQMESGRGQQL
VEVMQECLSAQNFVVDYQRQFPLEHDMKLLIQRCPNIKNYEVDFVVSGYQ
KALASCPNGIMADDMASNGVQVTGNVQDEEFKNGDSSRTSPQPSPTANGT
TRDIDLEVTAVLEVLPDLGSGFIRRLLIRYDNSEQVIAAILDDNLPPDLA
QMDRQEVYIPPDPQDKQQRQTGLRHFNVHDGDRYDVLTRDQPECIIKQGK
GLPGAPRNAEQLLDDKRDLKQLKERYQKYAMVEETTLERGEYDDEYDDSY
EAQNEGQAPPVSLLRGRLQEAASSSAYNAQDELENDDEESSGGHSDPEPS
MRTNRDFCENPEVIRARYEQRQLSKYGQKSGGHGASPSVVGAPKGQGQSQ
QTQRSRGQKEAHKSTRANHNRKAGAAFKRSKGMMG*
BS06834.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2701-PA | 735 | CG2701-PA | 1..735 | 1..735 | 3825 | 100 | Plus |