Clone BS06834 Report

Search the DGRC for BS06834

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:68
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCG2701-RA
Protein status:BS06834.pep: full length peptide match
Sequenced Size:2240

Clone Sequence Records

BS06834.3prime Sequence

925 bp (855 high quality bases) assembled on 2005-12-04

> BS06834.3prime
ATGGTCTAGAAAGCTTCTAACCCATCATGCCCTTGCTGCGCTTGAAGGCT
GCTCCTGCCTTGCGATTATGATTGGCACGAGTGGACTTGTGGGCCTCCTT
TTGGCCACGACTGCGCTGCGTCTGCTGGGACTGCCCCTGGCCCTTGGGTG
CTCCGACCACAGAGGGACTCGCTCCATGTCCACCACTCTTTTGGCCGTAT
TTGGATAACTGGCGCTGCTCGTAGCGGGCGCGTATCACCTCTGGATTCTC
GCAAAAGTCTCTGTTGGTGCGCATCGACGGCTCCGGGTCCGAATGGCCGC
CGGAGCTCTCCTCGTCGTCGTTCTCCAGCTCATCCTGTGCGTTGTACGCC
GAACTGGAGGCGGCTTCCTGGAGCCTTCCGCGCAGCAGACTCACAGGCGG
CGCTTGACCCTCGTTTTGAGCCTCGTAGCTGTCGTCGTACTCGTCGTCAT
ACTCGCCCCTCTCGAGCGTGGTCTCCTCGACCATGGCGTACTTCTGGTAG
CGCTCCTTTAGCTGCTTCAGGTCGCGCTTGTCGTCCAGCAACTGTTCCGC
ATTGCGTGGCGCTCCCGGCAATCCCTTGCCCTGCTTGATAATGCACTCGG
GCTGGTCCCGCGTCAGCACGTCGTAGCGATCGCCGTCGTGAACGTTGAAG
TGTCGCAGGCCCGTTTGGCGTTGCTGTTTGTCCTGCGGGTCGGGCGGAAT
GTACACCTCCTGTCGGTCCATCTGCGCTAGATCCGGCGGCAGATTGTCGT
CCAGAATGGCGGCAATGACCTGCTCGCTGTTATCGTAGCGGATGAGGAGG
CGCCTTATGAAGCCACTGCCCAGATCGGGCAGCACTTCCAGCACGGCGGT
GACTTCCNNAGTCATGTCCCTTGTCGTTCCGTTGGGCGTCGGCGACGGCT
GTGGAGAAGTGCGCGAGGAGTCGCC

BS06834.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG2701-PA 2208 CG2701-RA 1368..2208 857..17 4205 100 Minus
CG2701-PA 2208 CG2701-RA 1300..1361 925..864 285 98.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:22:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG2701-RA 2425 CG2701-RA 1452..2360 925..17 4474 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:22:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2717703..2718611 17..925 4448 99.2 Plus
Blast to na_te.dros performed on 2015-02-06 12:22:06 has no hits.

BS06834.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:29 Download gff for BS06834.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2701-PA 1300..2208 17..925 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:36:51 Download gff for BS06834.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2701-PA 1300..2208 17..925 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:42:59 Download gff for BS06834.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2701-RA 1452..2362 13..925 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:51:18 Download gff for BS06834.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2701-RA 1452..2362 13..925 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:51:18 Download gff for BS06834.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2717699..2718611 13..925 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:42:59 Download gff for BS06834.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2611732..2612644 13..925 99   Plus

BS06834.5prime Sequence

928 bp (776 high quality bases) assembled on 2005-12-04

> BS06834.5prime
GAAGTTATCAGTCGACATGCTGGACAACGACACCAGCAACAACAACAACT
GCAACCCACAGAATCTGCCACTGGACGAACTCAAGTTTGCACTTTCCGGC
AAGGATGGGGTGCGCAGGAACGTTCCGGCGCTGGACGAGCACTGGGTGCA
GCGCGAGAAGCCCTTTGCCAGCTATTTGTGCATGTTGAGCTCCTATGGAC
GCCTAAAATCCGGAGCTGCACTGGAGGAATGGACCTTCGCGGCGAACAAT
TTCCGTGGGGACATGGAGTTCCTGCTGAGCCTGACGCAGCACGAATTCTG
GTCCTACATGGTGTACGATGAATCGGCCATGGCGGCCGTTGTCACATTCC
TGCAGCGCGCTAATCCCTACTACAGACAGACAGATGTCAGCCGGGACAAG
GAGTTGGACCAGGCCCATCTGCTGTACGGACAGCTGCTCGATCTCGTCGT
GCGTCTGATAATGCGACTGTGCACCGGTAAGGAATCGGACTCGGAGTGGA
TTAGCCCGAAGCAACACGGCAGCCTGCTGTACAGCAACTACCTGATCTCT
GTGCCACTGCTCTTTGATCTGCTCATCGCTGTTGGCGATGCGGAGCCGGA
GAACGTGGAACTGTTGCGCCAGATCTTCGACAAGGTGCTGGAAGTGCAGC
CGGAGTACCAAAAGGATCTGAAGGAGGCGCTGATCTTCTACGAGAGCGCT
TTCCTCAGCATGCAGATCCAGGTGGAGAACGAGGGCTGCGAAGGTGCTGG
CGGCGGGGCGTCTCTGGACGTCGACTTGGAGACGCCCTACGACGATGTGG
TGCTCTTCGCCATGGACTGCGCATACACGCTGCGCCTGCTGCTGCTCCTC
TGTCCCCAGCTATTGGAAACCATCGAACAGCTGCGTTTGGCCCCAAGCAT
GCCAATTTCTATGACATGACTGTGCCCC

BS06834.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG2701-PA 2208 CG2701-RA 1..884 17..900 4420 100 Plus
CG2701-PA 2208 CG2701-RA 885..912 900..927 140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:24:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG2701-RA 2425 CG2701-RA 149..1064 13..927 4555 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:23:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2719165..2719767 897..295 3015 100 Minus
X 23542271 X 2719827..2719988 294..133 810 100 Minus
X 23542271 X 2720058..2720179 134..13 610 100 Minus
Blast to na_te.dros performed 2015-02-09 22:23:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2391..2451 25..80 114 68.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2801..2861 24..85 109 66.1 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7944..7988 11..55 108 71.1 Plus
TART-C 11124 TART-C TARTC 11124bp 9388..9432 11..55 108 71.1 Plus

BS06834.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:30 Download gff for BS06834.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2701-PA 1..912 17..928 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:36:52 Download gff for BS06834.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2701-PA 1..912 17..928 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:25:01 Download gff for BS06834.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2701-RA 149..1064 13..928 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:44:08 Download gff for BS06834.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2701-RA 149..1064 13..928 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:44:08 Download gff for BS06834.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2719060..2719091 898..928 93 <- Minus
X 2719165..2719767 295..897 100 <- Minus
X 2719827..2719987 134..294 100 <- Minus
X 2720059..2720179 13..133 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:25:01 Download gff for BS06834.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2613093..2613124 898..928 93 <- Minus
arm_X 2613198..2613800 295..897 100 <- Minus
arm_X 2613860..2614020 134..294 100 <- Minus
arm_X 2614092..2614212 13..133 100   Minus

BS06834.complete Sequence

2240 bp assembled on 2008-08-14

GenBank Submission: FJ635637

> BS06834.complete
GAAGTTATCAGTCGACATGCTGGACAACGACACCAGCAACAACAACAACT
GCAACCCACAGAATCTGCCACTGGACGAACTCAAGTTTGCACTTTCCGGC
AAGGATGGGGTGCGCAGGAACGTTCCGGCGCTGGACGAGCACTGGGTGCA
GCGCGAGAAGCCCTTTGCCAGCTATTTGTGCATGTTGAGCTCCTATGGAC
GCCTAAAATCCGGAGCTGCACTGGAGGAATGGACCTTCGCGGCGAACAAT
TTCCGTGGGGACATGGAGTTCCTGCTGAGCCTGACGCAGCACGAATTCTG
GTCCTACATGGTGTACGATGAATCGGCCATGGCGGCCGTTGTCACATTCC
TGCAGCGCGCTAATCCCTACTACAGACAGACAGATGTCAGCCGGGACAAG
GAGTTGGACCAGGCCCATCTGCTGTACGGACAGCTGCTCGATCTCGTCGT
GCGTCTGATAATGCGACTGTGCACCGGTAAGGAATCGGACTCGGAGTGGA
TTAGCCCGAAGCAACACGGCAGCCTGCTGTACAGCAACTACCTGATCTCT
GTGCCACTGCTCTTTGATCTGCTCATCGCTGTTGGCGATGCGGAGCCGGA
GAACGTGGAACTGTTGCGCCAGATCTTCGACAAGGTGCTGGAAGTGCAGC
CGGAGTACCAAAAGGATCTGAAGGAGGCGCTGATCTTCTACGAGAGCGCT
TTCCTCAGCATGCAGATCCAGGTGGAGAACGAGGGCTGCGAAGGTGCTGG
CGGCGGGGCGTCTCTGGACGTCGACTTGGAGACGCCCTACGACGATGTGG
TGCTCTTCGCCATGGACTGCGCATACACGCTGCGCCTGCTGCTGCTCCTC
TGTCCCCAGCTATTGGAAACCATCGAACAGCTGCGTTTGGCCCCAAGCAT
TGCCAATTTCTATGACATGACTGTGCCCATGTTGTACAAGAACATCTACT
TGGTGAACCCGGGTGCGAGTTCGCTGCGCTGGCTAAATGAGACGCGCCAG
CAATATATCTTCATCGTTCGTCGCGTGGTCAGCCTGCAGATGGAGTCGGG
ACGGGGACAGCAGCTGGTGGAAGTGATGCAGGAGTGCCTTTCCGCCCAGA
ACTTCGTTGTGGACTACCAGCGGCAGTTTCCGCTGGAGCACGACATGAAG
CTGCTGATCCAACGTTGCCCAAATATCAAGAACTACGAGGTGGACTTCGT
GGTGTCCGGTTATCAGAAGGCACTGGCCAGCTGCCCCAACGGCATAATGG
CCGACGATATGGCCAGTAACGGTGTCCAAGTTACGGGGAACGTCCAGGAC
GAGGAATTCAAGAACGGCGACTCCTCGCGCACTTCTCCACAGCCGTCGCC
GACGGCCAACGGAACGACAAGGGACATTGACTTGGAAGTCACCGCCGTGC
TGGAAGTGCTGCCCGATCTGGGCAGTGGCTTCATAAGGCGCCTCCTCATC
CGCTACGATAACAGCGAGCAGGTCATTGCCGCCATTCTGGACGACAATCT
GCCGCCGGATCTAGCGCAGATGGACCGACAGGAGGTGTACATTCCGCCCG
ACCCGCAGGACAAACAGCAACGCCAAACGGGCCTGCGACACTTCAACGTT
CACGACGGCGATCGCTACGACGTGCTGACGCGGGACCAGCCCGAGTGCAT
TATCAAGCAGGGCAAGGGATTGCCGGGAGCGCCACGCAATGCGGAACAGT
TGCTGGACGACAAGCGCGACCTGAAGCAGCTAAAGGAGCGCTACCAGAAG
TACGCCATGGTCGAGGAGACCACGCTCGAGAGGGGCGAGTATGACGACGA
GTACGACGACAGCTACGAGGCTCAAAACGAGGGTCAAGCGCCGCCTGTGA
GTCTGCTGCGCGGAAGGCTCCAGGAAGCCGCCTCCAGTTCGGCGTACAAC
GCACAGGATGAGCTGGAGAACGACGACGAGGAGAGCTCCGGCGGCCATTC
GGACCCGGAGCCGTCGATGCGCACCAACAGAGACTTTTGCGAGAATCCAG
AGGTGATACGCGCCCGCTACGAGCAGCGCCAGTTATCCAAATACGGCCAA
AAGAGTGGTGGACATGGAGCGAGTCCCTCTGTGGTCGGAGCACCCAAGGG
CCAGGGGCAGTCCCAGCAGACGCAGCGCAGTCGTGGCCAAAAGGAGGCCC
ACAAGTCCACTCGTGCCAATCATAATCGCAAGGCAGGAGCAGCCTTCAAG
CGCAGCAAGGGCATGATGGGTTAGAAGCTTTCTAGACCAT

BS06834.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:18:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG2701-RA 2208 CG2701-PA 1..2208 17..2224 11040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:18:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG2701-RA 2425 CG2701-RA 149..2360 13..2224 11060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:18:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2717703..2718750 2224..1177 5240 100 Minus
X 23542271 X 2719165..2719767 897..295 3015 100 Minus
X 23542271 X 2718813..2719093 1176..896 1405 100 Minus
X 23542271 X 2719827..2719988 294..133 810 100 Minus
X 23542271 X 2720058..2720179 134..13 610 100 Minus
Blast to na_te.dros performed 2014-11-27 13:18:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2391..2451 25..80 114 68.9 Plus

BS06834.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:50:58 Download gff for BS06834.complete
Subject Subject Range Query Range Percent Splice Strand
CG2701-RA 147..2360 13..2228 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:44 Download gff for BS06834.complete
Subject Subject Range Query Range Percent Splice Strand
CG2701-RA 153..2360 17..2224 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:10:58 Download gff for BS06834.complete
Subject Subject Range Query Range Percent Splice Strand
CG2701-RA 151..2358 17..2224 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:24 Download gff for BS06834.complete
Subject Subject Range Query Range Percent Splice Strand
CG2701-RA 153..2360 17..2224 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:24 Download gff for BS06834.complete
Subject Subject Range Query Range Percent Splice Strand
X 2718813..2719091 898..1176 100 <- Minus
X 2717703..2718750 1177..2224 100 <- Minus
X 2719165..2719767 295..897 100 <- Minus
X 2719827..2719987 134..294 100 <- Minus
X 2720059..2720175 17..133 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:44 Download gff for BS06834.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2611736..2612783 1177..2224 100 <- Minus
arm_X 2612846..2613124 898..1176 100 <- Minus
arm_X 2613198..2613800 295..897 100 <- Minus
arm_X 2613860..2614020 134..294 100 <- Minus
arm_X 2614092..2614208 17..133 100   Minus

BS06834.pep Sequence

Translation from 16 to 2223

> BS06834.pep
MLDNDTSNNNNCNPQNLPLDELKFALSGKDGVRRNVPALDEHWVQREKPF
ASYLCMLSSYGRLKSGAALEEWTFAANNFRGDMEFLLSLTQHEFWSYMVY
DESAMAAVVTFLQRANPYYRQTDVSRDKELDQAHLLYGQLLDLVVRLIMR
LCTGKESDSEWISPKQHGSLLYSNYLISVPLLFDLLIAVGDAEPENVELL
RQIFDKVLEVQPEYQKDLKEALIFYESAFLSMQIQVENEGCEGAGGGASL
DVDLETPYDDVVLFAMDCAYTLRLLLLLCPQLLETIEQLRLAPSIANFYD
MTVPMLYKNIYLVNPGASSLRWLNETRQQYIFIVRRVVSLQMESGRGQQL
VEVMQECLSAQNFVVDYQRQFPLEHDMKLLIQRCPNIKNYEVDFVVSGYQ
KALASCPNGIMADDMASNGVQVTGNVQDEEFKNGDSSRTSPQPSPTANGT
TRDIDLEVTAVLEVLPDLGSGFIRRLLIRYDNSEQVIAAILDDNLPPDLA
QMDRQEVYIPPDPQDKQQRQTGLRHFNVHDGDRYDVLTRDQPECIIKQGK
GLPGAPRNAEQLLDDKRDLKQLKERYQKYAMVEETTLERGEYDDEYDDSY
EAQNEGQAPPVSLLRGRLQEAASSSAYNAQDELENDDEESSGGHSDPEPS
MRTNRDFCENPEVIRARYEQRQLSKYGQKSGGHGASPSVVGAPKGQGQSQ
QTQRSRGQKEAHKSTRANHNRKAGAAFKRSKGMMG*

BS06834.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG2701-PA 735 CG2701-PA 1..735 1..735 3825 100 Plus