Clone Sequence Records
BS06835.3prime Sequence
905 bp (780 high quality bases) assembled on 2005-12-04
> BS06835.3prime
ATGGTCTAGAAAGCTTTTACGTGAAAAGGTCCTTAAACTGCTGTAGATCC
TGCTGATGAACGGGTTTCTGACTAATAGAGCCCAAAAGTTTGCAGTCTTC
CAAGCGCACGCCATGCTCAACAAGAGCTGCTATCAGTCGCGAGGTGTAGA
GCACTGGTCCGCCCACCATGTGCAAGAAATCATAGTGCTTCTCCCGCCGC
GTGCTAAAAAGGATTCGCTTAGAGACAAAGTCTCCGTAGTTGCTGATACG
TCCCACACACACATAGCGCTGCAGTGAGGGGGCATAAACTTCGATGACTG
CCCGGATACTCTCCGCCGGAGTTAGATCTGCTGCTGTTGCATAAGAAATC
CTGAATGGTATGTCCAGTGCTTTGTAGAAATCAGTTGCCAGATTGAGAAT
ATGCTCTAGTTGGGAGTCCGCTTCGTTGTCCGTTTGCGTTGCCACAAAGA
TTTGTACCGCATTCGTTTGTGTCGCCGTATAAAGACTAGGAATGGGCCCA
TACAAATCCGCTTCCGCTCTGTTGTAGCTCCGACCACAGCAGACATACCG
AAGGGGCAGCACCGAGGGATACACGCACAGCTTGGTCATGGCACCAAGGT
AGCTCTCGAAGGACGCACCTCCAGTCAAATAGGCGGTATTGATCTTGTTT
TGCAGGTGCTCTTCCTGAACCAGATGATAGTCGGATAAGGGTGTCGCATT
TGCTTCCAGGAGAACGCAACGCACAAAGTCCGGATTGGCGGTTTGAATGA
AGTGCCCGTGGTTGACGAAATAGCGGGCCAGGGATTGCATGGCATTTACG
TCAAAAAGAGCAGCCTGCTCCATCAAGTAGTAACGATTTGTGTCTACAAA
ATGTACAAGTTCCCTGGCGTGCCAAGTGGGATGTAGTCTTATTTTCTGAT
TTGGG
BS06835.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31133-PA | 1395 | CG31133-RA | 549..1395 | 863..17 | 4185 | 99.7 | Minus |
| CG31133-PA | 1395 | CG31133-RA | 508..550 | 905..863 | 215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:11:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slimp-RA | 1532 | CG31133-RA | 574..1463 | 905..15 | 4400 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:11:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24147505..24148394 | 15..905 | 4375 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-09 01:11:49 has no hits.
BS06835.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:32 Download gff for
BS06835.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31133-PA | 508..1395 | 17..905 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:36:54 Download gff for
BS06835.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31133-PA | 508..1395 | 17..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:52:25 Download gff for
BS06835.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slimp-RA | 574..1470 | 9..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:07:02 Download gff for
BS06835.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slimp-RA | 574..1470 | 9..905 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:07:02 Download gff for
BS06835.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24147498..24148394 | 9..905 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:52:25 Download gff for
BS06835.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19973220..19974116 | 9..905 | 99 | | Plus |
BS06835.5prime Sequence
906 bp (829 high quality bases) assembled on 2005-12-04
> BS06835.5prime
GAAGTTATCAGTCGACATGTTGAGCCTGCGAAGTGTATTAAAACACTGCC
TTTCGGCAAAGAAAACGTGTAGCAGAAACATCTCCGCGCTGTACATAACC
GGCGATAAAGCGAACGAAAACTATGTGACTCTGCAGCCGTACATGGACTT
CAATAAAACCTTTGGAGAGCGGCAATTTTTGGAGCAGAGCATCTCCAGCC
GGGGATTGGACATTCGTTTGGAAACTGTGCTCAGCAAGTACGAGAAGTAT
AAAACACATCACGCTCAGCTGTCCAAGGTGGCGGAGGAACGCGAAAGGGT
GACCAAGCGCCTAAAGGAGCTAACGAAATCTGGTAGTAGTGCGGTTCAGC
TGGAGGAGTTGAAAGAGCATGGGAAATCGTTGCGCAATGAGCTAAAGGCT
CTGAAGCAGACTCTCTATCCCATAGAGGATGACTTTATTCATGACTATCT
GCACTTGCCCAACCTTCTGCATGTCCAGTGCCCTGTTGGAGGGGAGGAAA
AGCTTCTCTATCGTCATGGGATACCCAAATCAGAAAATAAGACTACATCC
CACTTGGCACGCCAGGAACTTGTACATTTTGTAGACAACAATCGTTACTA
CTTGATGGAGCAGGCTGCTCTTTTTGACGTAAATGCCATGCAATCCCTGG
CCCGCTATTTCGTCAACCACGGGCACTTCATTCAAACCGCCAATCCGGAC
TTTGTGCGTTGCGTTCTCCTGGAAGCAAATGCGACACCCTTATCCGACTA
TCATCTGGTTCAGGAAGAGCACCTGCAAAACAAGATCAATACCGCCTATT
TGACTGGAGGTGCGTCCTTCGAGAGCTACCTTGGTGCCATGACCAAGCTG
TGCGTGTATCCCTCGGTGCTGCCCCTTCGGTATGTCTGCTGTGGTCGGAG
CTACAA
BS06835.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31133-PA | 1395 | CG31133-RA | 1..890 | 17..906 | 4450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:47:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slimp-RA | 1532 | CG31133-RA | 67..956 | 17..906 | 4450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:47:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24148012..24148901 | 906..17 | 4450 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:47:23 has no hits.
BS06835.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:33 Download gff for
BS06835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31133-PA | 1..888 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:36:55 Download gff for
BS06835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31133-PA | 1..888 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:36:30 Download gff for
BS06835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slimp-RA | 67..954 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:21:34 Download gff for
BS06835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slimp-RA | 67..954 | 17..904 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:21:34 Download gff for
BS06835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24148014..24148901 | 17..904 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:36:30 Download gff for
BS06835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19973736..19974623 | 17..904 | 100 | | Minus |
BS06835.complete Sequence
1427 bp (1427 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635638
> BS06835.complete
GAAGTTATCAGTCGACATGTTGAGCCTGCGAAGTGTATTAAAACACTGCC
TTTCGGCAAAGAAAACGTGTAGCAGAAACATCTCCGCGCTGTACATAACC
GGCGATAAAGCGAACGAAAACTATGTGACTCTGCAGCCGTACATGGACTT
CAATAAAACCTTTGGAGAGCGGCAATTTTTGGAGCAGAGCATCTCCAGCC
GGGGATTGGACATTCGTTTGGAAACTGTGCTCAGCAAGTACGAGAAGTAT
AAAACACATCACGCTCAGCTGTCCAAGGTGGCGGAGGAACGCGAAAGGGT
GACCAAGCGCCTAAAGGAGCTAACGAAATCTGGTAGTAGTGCGGTTCAGC
TGGAGGAGTTGAAAGAGCATGGGAAATCGTTGCGCAATGAGCTAAAGGCT
CTGAAGCAGACTCTCTATCCCATAGAGGATGACTTTATTCATGACTATCT
GCACTTGCCCAACCTTCTGCATGTCCAGTGCCCTGTTGGAGGGGAGGAAA
AGCTTCTCTATCGTCATGGGATACCCAAATCAGAAAATAAGACTACATCC
CACTTGGCACGCCAGGAACTTGTACATTTTGTAGACAACAATCGTTACTA
CTTGATGGAGCAGGCTGCTCTTTTTGACGTAAATGCCATGCAATCCCTGG
CCCGCTATTTCGTCAACCACGGGCACTTCATTCAAACCGCCAATCCGGAC
TTTGTGCGTTGCGTTCTCCTGGAAGCAAATGCGACACCCTTATCCGACTA
TCATCTGGTTCAGGAAGAGCACCTGCAAAACAAGATCAATACCGCCTATT
TGACTGGAGGTGCGTCCTTCGAGAGCTACCTTGGTGCCATGACCAAGCTG
TGCGTGTATCCCTCGGTGCTGCCCCTTCGGTATGTCTGCTGTGGTCGGAG
CTACAACAGAGCGGAAGCGGATTTGTATGGGCCCATTCCTAGTCTTTATA
CGGCGACACAAACGAATGCGGTACAAATCTTTGTGGCAACGCAAACGGAC
AACGAAGCGGACTCCCAACTAGAGCATATTCTCAATCTGGCAACTGATTT
CTACAAAGCACTGGACATACCATTCAGGATTTCTTATGCAACAGCAGCAG
ATCTAACTCCGGCGGAGAGTATCCGGGCAGTCATCGAAGTTTATGCCCCC
TCACTGCAGCGCTATGTGTGTGTGGGACGTATCAGCAACTACGGAGACTT
TGTCTCTAAGCGAATCCTTTTTAGCACGCGGCGGGAGAAGCACTATGATT
TCTTGCACATGGTGGGCGGACCAGTGCTCTACACCTCGCGACTGATAGCA
GCTCTTGTTGAGCATGGCGTGCGCTTGGAAGACTGCAAACTTTTGGGCTC
TATTAGTCAGAAACCCGTTCATCAGCAGGATCTACAGCAGTTTAAGGACC
TTTTCACGTAAAAGCTTTCTAGACCAT
BS06835.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:32:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slimp-RA | 1395 | CG31133-PA | 1..1395 | 17..1411 | 6975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:32:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slimp-RA | 1532 | CG31133-RA | 67..1463 | 17..1413 | 6985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:32:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24147505..24148901 | 1413..17 | 6985 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:32:07 has no hits.
BS06835.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:20 Download gff for
BS06835.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31133-RA | 1..1395 | 17..1411 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:03 Download gff for
BS06835.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31133-RA | 23..1426 | 17..1419 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:02 Download gff for
BS06835.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slimp-RA | 72..1459 | 22..1409 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:21 Download gff for
BS06835.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31133-RA | 23..1426 | 17..1419 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:38 Download gff for
BS06835.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slimp-RA | 72..1459 | 22..1409 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:38 Download gff for
BS06835.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24147509..24148896 | 22..1409 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:02 Download gff for
BS06835.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19973231..19974618 | 22..1409 | 100 | | Minus |
BS06835.pep Sequence
Translation from 16 to 1410
> BS06835.pep
MLSLRSVLKHCLSAKKTCSRNISALYITGDKANENYVTLQPYMDFNKTFG
ERQFLEQSISSRGLDIRLETVLSKYEKYKTHHAQLSKVAEERERVTKRLK
ELTKSGSSAVQLEELKEHGKSLRNELKALKQTLYPIEDDFIHDYLHLPNL
LHVQCPVGGEEKLLYRHGIPKSENKTTSHLARQELVHFVDNNRYYLMEQA
ALFDVNAMQSLARYFVNHGHFIQTANPDFVRCVLLEANATPLSDYHLVQE
EHLQNKINTAYLTGGASFESYLGAMTKLCVYPSVLPLRYVCCGRSYNRAE
ADLYGPIPSLYTATQTNAVQIFVATQTDNEADSQLEHILNLATDFYKALD
IPFRISYATAADLTPAESIRAVIEVYAPSLQRYVCVGRISNYGDFVSKRI
LFSTRREKHYDFLHMVGGPVLYTSRLIAALVEHGVRLEDCKLLGSISQKP
VHQQDLQQFKDLFT*
BS06835.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slimp-PA | 464 | CG31133-PA | 1..464 | 1..464 | 2401 | 100 | Plus |
| Aats-ser-PB | 417 | CG4938-PB | 85..376 | 147..432 | 180 | 25 | Plus |
| Aats-ser-PA | 417 | CG4938-PA | 85..376 | 147..432 | 180 | 25 | Plus |
