Clone Sequence Records
BS06838.complete Sequence
2249 bp assembled on 2009-12-07
GenBank Submission: KX800938
> BS06838.complete
GAAGTTATCAGTCGACATGGATTTACAGCAGCTGGAGGAGCAGGCTCGCC
AGGCAGCGCTCAAGGACATACAGAACATGTTGCAGCGACCAGGTCAACTG
GAGAAGGTGGAACAATATCGCCACCGAATCGCCCGGAAGAAGGCATCCGT
TGAGGCGCTCCTTAAGACCGGAATGCAAGGACAGCTGGACGGGGTCAGGG
TGGGACTTAAGCAGTTGGAGACCTGCATGCAGGACGTGCGCGAGGTAAGG
CGTCGAATGGACGAGGTGGAGCGCCTGCTGAGGGGCGTTCCCGAAGTCTA
CGACGCTTTGGAAGTTGTGCGGGAGGAAAACACAAAGCACTCCCAGTACG
CCACCGCCATGGAGAATCTGAAGCACATCTTCAACGTAGATGCCAGCGTA
CAAAAGACGATGGCGCTGATCGAGGATGATAAGCTGCTTAATGCCCATCA
GTGCCTGGCGGATCTGGAGAATTCGCGGGATGATCTTCTCTACGAACTGC
ACAAGCAGCCCAAGCAGCATGCGTCCGACAAGATCACCCTAAAGCGTCAC
TTCGAGAAGGTTGACACGGTATCCCAAGAGCTGGAGAAAAAGCTGCGACT
CATTCTTAGCCGCACGCTGAACACTCTGCGCAAGAAGCCCACCATCATCG
TTACCGCCCTACGCATCATAGAGCGGGAAGAGAAAAACGACCAGTTCGCG
TTGCAGCAGCAAAAGGTCACAGGATTCCTGCCGCCTGGAAGACCAAAGGC
TTGGCGCCGCATGATCATGGACGTGCTACAACAGTCGGTGATAACGCGCA
TAGAGGGATCCAAGCTAGAGGAGCGGGCCGATAACAAGATGTGGTTAGTA
CGAGACCTGGAGATATTGCGTCAAATCATTCTCGAGGATCTGCGCGTTGT
GAAGTCCCTTTGTGTGCCCTGCTTCCCGCCGCACTACGACATTTTCGGCG
AATATGTCAAGTTCTATCACGAAGGACTTTCTAGCTATCTTGACAACATT
GTGCGCTCGGGCTTGGAGGGCAATGAATATGTATCAATGATGGCTTGGGT
TACACACACCTATCCTGGCGTCGAGCTGATGTCCCATCCGGATCTTAATG
TGGATGTACACCGACAGATAGGTACTCTGCTGCGTCCGGAACATCTCAAA
GCGCTGGAAGATGAATATCTGCAAAATATGCAGAGAAACTTCCAGGAATG
GATGACCAAGGCCGCAGAAACGGAGAAGCAGGAGTGGTTTACTGAGACGG
TGCCCGATCAGGATGAGGAGTACTACCACACTTCAGCGCCTGTCATCATA
TTCCAGATGATCGACCAGCATCTGCAGGTGACCAACACAATTCATCAGGA
ACTGACGTTCAAGGCGTTGGTAATGAGCATTCAGCAGGTGGAGATCTTTG
GCCAGACATATCTTAAGAACGTAATCGAGCTGAAGGAACACCATTTTCGC
AATCGGGACCAGATCAAATACTTCACTCACTACATCATCACCATCGTGAA
TAACAGTCAGCAAATGGTTGAACTGGCGCAGCAGATGAAACAACTCTACT
GGCCCAAGTCACGTACTGAGCATTATGAGGATTTCGAACGTTTGCTTGCC
ACATTCCAGCGGATCCGGGCTCATGCCGCAAGTTACTTGCTGGAGGAAGC
CTTCCTGGACATGGAGTGTCACTTTAACGACCTATTCACTGCCAAGTGGC
TGGCCAGTAACATTGCCGTGGACACCATTTGTGTAACGCTGGACGATTAC
TTCCAGGACTATAATCACCTGCGACCCAATAACTTCGAGATGGTCATCAA
CGAGGCCCAGAAGCTGCTGGCCAAGCGCTACATTAGGGCACTGCTATCCA
AGCGACTGTCTAAGCCACGGGCCGAGTGCGATGCCATTACGCGAAAAATC
AAGACCGAAGCCAAGCGGTTTAAGCTCTTCTTTGAGAAAATCGCGCCGAA
GATTTCCCTCAGCGACTCTCCATTGGATCTTATATCCACGCTATCGGCAC
TGCTTAGCTCGGATATCGAACTGCTCGTCTTGGACCTGCACACCTTGCTG
GGCAGCTATCCGTCTCTGAACGAGGACCACCTGGTACGGCTCTTTTACAT
TCGCAACGATGTGAAGGCGGCCGAGGTGCGCGAGAAGGTGCAGGATGCCA
TGAAGTCGAAGAAGGCAATGGTCAGCATCGCCAAGCAGGATTGCATCTTC
AAGGAGATCGTGTTCAGCGACAAACTGTGGTAGAAGCTTTCTAGACCAT
BS06838.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:05:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec6-RA | 2217 | CG5341-PA | 1..2217 | 17..2233 | 11085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:05:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec6-RA | 2405 | CG5341-RA | 95..2312 | 17..2234 | 11090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:05:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18626380..18627625 | 989..2234 | 6230 | 100 | Plus |
| 2R | 25286936 | 2R | 18625343..18626314 | 17..988 | 4860 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:05:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G6 | 2042 | G6 G6_DM 2042bp | 512..578 | 624..693 | 127 | 69 | Plus |
BS06838.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:33 Download gff for
BS06838.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sec6-RA | 77..2293 | 17..2233 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:05:49 Download gff for
BS06838.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sec6-RA | 95..2311 | 17..2233 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:04:11 Download gff for
BS06838.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sec6-RA | 77..2293 | 17..2233 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:53 Download gff for
BS06838.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec6-RA | 95..2311 | 17..2233 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:53 Download gff for
BS06838.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18625343..18626314 | 17..988 | 100 | -> | Plus |
| 2R | 18626380..18627624 | 989..2233 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:05:49 Download gff for
BS06838.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14512848..14513819 | 17..988 | 100 | -> | Plus |
| arm_2R | 14513885..14515129 | 989..2233 | 100 | | Plus |
BS06838.3prime Sequence
924 bp (799 high quality bases) assembled on 2005-12-04
> BS06838.3prime
ATGGTCTAGAAAGCTTCTACCACAGTTTGTCGCTGAACACGATCTCCTTG
AAGATGCAATCCTGCTTGGCGATGCTGACCATTGCCTTCTTCGACTTCAT
GGCATCCTGCACCTTCTCGCGCACCTCGGCCGCCTTCACATCGTTGCGAA
TGTAAAAGAGCCGTACCAGGTGGTCCTCGTTCAGAGACGGATAGCTGCCC
AGCAAGGTGTGCAGGTCCAAGACGAGCAGTTCGATATCCGAGCTAAGCAG
TGCCGATAGCGTGGATATAAGATCCAATGGAGAGTCGCTGAGGGAAATCT
TCGGCGCGATTTTCTCAAAGAAGAGCTTAAACCGCTTGGCTTCGGTCTTG
ATTTTTCGCGTAATGGCATCGCACTCGGCCCGTGGCTTAGACAGTCGCTT
GGATAGCAGTGCCCTAATGTAGCGCTTGGCCAGCAGCTTCTGGGCCTCGT
TGATGACCATCTCGAAGTTATTGGGTCGCAGGTGATTATAGTCCTGGAAG
TAATCGTCCAGCGTTACACAAATGGTGTCCACGGCAATGTTACTGGCCAG
CCACTTGGCAGTGAATAGGTCGTTAAAGTGACACTCCATGTCCAGGAAGG
CTTCCTCCAGCAAGTAACTTGCGGCATGAGCCCGGATCCGCTGGAATGTG
GCAAGCAAACGTTCGAAATCCTCATAATGCTCAGTACGTGACTTGGGCCA
GTAGAGTTGTTTCATCTGCTGCGCCAGTTCAACCATTTGCTGACTGTTAT
TCACGATGGTGATGATGTAGTGAGTGAAGTATTTGATCTGGTCCCGATTG
CGAAAATGGTGTTCCTTCAGCTCGATTACGTTCTTAAGATATGTCTGGCC
AAAGATCTCCACCTGCTGAATGCTCATTACCAACGCCTTGAACGTCAGTT
CCTGATGAATTTGTGTGGTCACCT
BS06838.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5341-PA | 2217 | sec6-RA | 1323..2217 | 911..17 | 4475 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:13:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec6-RA | 2405 | CG5341-RA | 1404..2312 | 924..16 | 4500 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:13:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18626717..18627625 | 924..16 | 4485 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:13:03 has no hits.
BS06838.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:38 Download gff for
BS06838.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sec6-PA | 1310..2217 | 17..924 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:37:03 Download gff for
BS06838.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5341-PA | 1310..2217 | 17..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:02:31 Download gff for
BS06838.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sec6-RA | 1404..2316 | 11..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:46 Download gff for
BS06838.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec6-RA | 1404..2316 | 11..924 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:46 Download gff for
BS06838.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18626717..18627629 | 11..924 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:02:31 Download gff for
BS06838.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14514222..14515134 | 11..924 | 99 | | Minus |
BS06838.5prime Sequence
893 bp (857 high quality bases) assembled on 2005-12-04
> BS06838.5prime
GAAGTTATCAGTCGACATGGATTTACAGCAGCTGGAGGAGCAGGCTCGCC
AGGCAGCGCTCAAGGACATACAGAACATGTTGCAGCGACCAGGTCAACTG
GAGAAGGTGGAACAATATCGCCACCGAATCGCCCGGAAGAAGGCATCCGT
TGAGGCGCTCCTTAAGACCGGAATGCAAGGACAGCTGGACGGGGTCAGGG
TGGGACTTAAGCAGTTGGAGACCTGCATGCAGGACGTGCGCGAGGTAAGG
CGTCGAATGGACGAGGTGGAGCGCCTGCTGAGGGGCGTTCCCGAAGTCTA
CGACGCTTTGGAAGTTGTGCGGGAGGAAAACACAAAGCACTCCCAGTACG
CCACCGCCATGGAGAATCTGAAGCACATCTTCAACGTAGATGCCAGCGTA
CAAAAGACGATGGCGCTGATCGAGGATGATAAGCTGCTTAATGCCCATCA
GTGCCTGGCGGATCTGGAGAATTCGCGGGATGATCTTCTCTACGAACTGC
ACAAGCAGCCCAAGCAGCATGCGTCCGACAAGATCACCCTAAAGCGTCAC
TTCGAGAAGGTTGACACGGTATCCCAAGAGCTGGAGAAAAAGCTGCGACT
CATTCTTAGCCGCACGCTGAACACTCTGCGCAAGAAGCCCACCATCATCG
TTACCGCCCTACGCATCATAGAGCGGGAAGAGAAAAACGACCAGTTCGCG
TTGCAGCAGCAAAAGGTCACAGGATTCCTGCCGCCTGGAAGACCAAAGGC
TTGGCGCCGCATGATCATGGACGTGCTACAACAGTCGGTGATAACGCGCA
TAGAGGGATCCAAGCTAGAGGAGCGGGCCGATAACAAGATGTGGTTAGTA
CGAGACCTGNAGATATTGCGTCAAATCATTCTCGAGGATCTGC
BS06838.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5341-PA | 2217 | sec6-RA | 1..877 | 17..893 | 4366 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:48:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec6-RA | 2405 | CG5341-RA | 95..971 | 17..893 | 4374 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:48:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18625343..18626219 | 17..893 | 4374 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-12 12:48:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G6 | 2042 | G6 G6_DM 2042bp | 512..578 | 624..693 | 127 | 69 | Plus |
BS06838.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:39 Download gff for
BS06838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sec6-PA | 1..877 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:37:04 Download gff for
BS06838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5341-PA | 1..877 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:04:12 Download gff for
BS06838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sec6-RA | 95..971 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:31:39 Download gff for
BS06838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec6-RA | 95..971 | 17..893 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:31:39 Download gff for
BS06838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18625343..18626219 | 17..893 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:04:12 Download gff for
BS06838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14512848..14513724 | 17..893 | 99 | | Plus |
BS06838.pep Sequence
Translation from 16 to 2232
> BS06838.pep
MDLQQLEEQARQAALKDIQNMLQRPGQLEKVEQYRHRIARKKASVEALLK
TGMQGQLDGVRVGLKQLETCMQDVREVRRRMDEVERLLRGVPEVYDALEV
VREENTKHSQYATAMENLKHIFNVDASVQKTMALIEDDKLLNAHQCLADL
ENSRDDLLYELHKQPKQHASDKITLKRHFEKVDTVSQELEKKLRLILSRT
LNTLRKKPTIIVTALRIIEREEKNDQFALQQQKVTGFLPPGRPKAWRRMI
MDVLQQSVITRIEGSKLEERADNKMWLVRDLEILRQIILEDLRVVKSLCV
PCFPPHYDIFGEYVKFYHEGLSSYLDNIVRSGLEGNEYVSMMAWVTHTYP
GVELMSHPDLNVDVHRQIGTLLRPEHLKALEDEYLQNMQRNFQEWMTKAA
ETEKQEWFTETVPDQDEEYYHTSAPVIIFQMIDQHLQVTNTIHQELTFKA
LVMSIQQVEIFGQTYLKNVIELKEHHFRNRDQIKYFTHYIITIVNNSQQM
VELAQQMKQLYWPKSRTEHYEDFERLLATFQRIRAHAASYLLEEAFLDME
CHFNDLFTAKWLASNIAVDTICVTLDDYFQDYNHLRPNNFEMVINEAQKL
LAKRYIRALLSKRLSKPRAECDAITRKIKTEAKRFKLFFEKIAPKISLSD
SPLDLISTLSALLSSDIELLVLDLHTLLGSYPSLNEDHLVRLFYIRNDVK
AAEVREKVQDAMKSKKAMVSIAKQDCIFKEIVFSDKLW*
BS06838.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:05:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec6-PA | 738 | CG5341-PA | 1..738 | 1..738 | 3789 | 100 | Plus |
