Clone BS06840 Report

Search the DGRC for BS06840

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:68
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptIlk-RA
Protein status:BS06840.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06840.3prime Sequence

951 bp (804 high quality bases) assembled on 2005-12-04

> BS06840.3prime
ATGGTCTAGAAAGCTTTCAGCGGCGCATCTTCTCCAGAATGGGAACCACC
ATGTCGAACTTGGGCCGCTTGCCGGGATCCTCGTTCATGCAGATTGAAAT
CAGCTTGGCCATGTGCGTCGATGTGCCTGGCGGAATCTTGACCCGCAGAC
CTTCCAACGCAATTTTCATGCCGCACTCCATGGGCGACCACTCGGCGAAG
GGTACCTCGCGCGTAGTCAGCTCCCAAATAAGAATAGCAAAGCTCCACAT
GTCACAGGCCTCCCAGTTTCGATCCGCCTGCTTGCGCTGCAATGTTTCCG
GCGACATCCAAGCCGGTTGATAGATGCGTCCCTTCTCTTGGAAAGAGAAT
TTGGCATCGCCCATGTTGATTCTCGCCGTCAGATCATCGTCGATCATCAC
GTGATGACTGTTCAGGTGATATGTTGGAATAATGCGCTCCAGCGAGTGCA
GGAAAGCCATTCCTCTCGCAACATCCAAGGCAAAGCTTACCGCCTGGCTG
GTGTCCACCACGACGCCAGTTGCTCCATGCAGCAGGCTAAACAGCGAAGA
ACGTGGCATAAACTGACTAATTGTCACCAGATTGGGTGGCGAATTGCATG
CTCCAATAATAGGCAAAATGTTAGGGTGCGAAAAGATGCGGAGCTTGGGA
AACTCCTCGTTAAAATCTCGCGATATACGAGGCGTGCACTGACGCACGGC
CAGGATCTTAGCTACCACATCGTTCTTTTGCCAGCGTCCGCGCCAAGTTT
CTCCTGATGGCGTCACCGACAGCTTGGTATGCAGGTCTAGGTCTCCCATA
CTGATTCCCCTTGAACGGGACAAAGTAGCATCCCGGGATCTCGTCTTCAA
TCCCTGCAGCTTTGTTCCTTGAAGCTGATACCCTTACCTCTCTGCCGCTC
TTTTCTACAAGATCCTGAAACCTCTTTGGCAGACTGGGTTTGGCCTTTTT
C

BS06840.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG10504-PA 1347 Ilk-RA 555..1347 809..17 3965 100 Minus
CG10504-PA 1347 Ilk-RA 413..476 949..886 245 95.3 Minus
CG10504-PA 1347 Ilk-RA 507..550 857..814 220 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:47:35
Subject Length Description Subject Range Query Range Score Percent Strand
Ilk-RA 1806 CG10504-RA 576..1511 949..16 4525 99.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21218397..21218945 564..16 2745 100 Minus
3L 28110227 3L 21217948..21218336 949..563 1740 97.7 Minus
Blast to na_te.dros performed on 2015-02-03 12:47:32 has no hits.

BS06840.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:42 Download gff for BS06840.3prime
Subject Subject Range Query Range Percent Splice Strand
Ilk-PA 412..1347 17..951 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:37:08 Download gff for BS06840.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10504-PA 412..1347 17..951 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:53:54 Download gff for BS06840.3prime
Subject Subject Range Query Range Percent Splice Strand
Ilk-RA 575..1511 16..951 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:44:34 Download gff for BS06840.3prime
Subject Subject Range Query Range Percent Splice Strand
Ilk-RA 575..1511 16..951 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:44:34 Download gff for BS06840.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21217947..21218336 563..951 97 -> Minus
3L 21218399..21218945 16..562 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:53:54 Download gff for BS06840.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21211047..21211436 563..951 97 -> Minus
arm_3L 21211499..21212045 16..562 100   Minus

BS06840.5prime Sequence

853 bp (851 high quality bases) assembled on 2005-12-04

> BS06840.5prime
GAAGTTATCAGTCGACATGGAGGACATATTCCACTGGTGCCGCGAGGGCA
ACTCGATTCAAGTGCGCCTCTGGTTGGATGAAACGGAGCACGACAACAAT
TTGGGAGACGACCATGGCTTCAGCCCGTTGCATTGGGTGGCTAAAGAGGG
CCACGCCAAGCTTGTGGAGACTCTGTTGCAGCGCGGTTCGCGTGTGAACG
CCACCAATATGGGCGACGACATCCCACTCCATTTAGCGGCAGCTCATGGC
CACCGCGACGTGGTCCAGATGTTGATAAAAGAGCGCAGCGATGTGAATGC
GGTAAACGAGCATGGAAACACCCCCCTGCACTACGCCTGTTTTTGGGGCT
ATGACATGATCTGCGAGGATCTGCTTAATGCGGGAGCCCAGGTGGGAATC
GCAAACAAGGACGGGCACACACCTCTTGAAAAGGCCAAACCCAGTCTGGC
CAAGAGGCTTCAGGATCTTGTAGAAAAGAGCGGCAGAGAGGTTAAGGTTA
TCAGCTTCAAGGAACAAAGCTGGCAGGGATTGAAGACGAGATCCCGGGAT
GCTACTTTGTCCCGTTTCAAGGGAATCAGTATGGGAGACCTAGACCTGCA
TACCAAGCTGTCGGTGACGCCATCAGGAGAAACTTGGCGCGGACGCTGGC
AAAAGAACGATGTGGTAGCTAAGATCCTGGCCGTGCGTCAGTGCACGCCT
CGTATATCGCGAGATTTTAACGAGGAGTTTCCCAAGCTCCGCATCTTTTC
GCACCCTAACATTTTGCCTATTATTGGAGCATGCAATTCGCCACCCAATC
TGGTGACAATTAGTCAGTTTATGCCACGTTCTTCGCTGTTTAGCCTGCTG
CAT

BS06840.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG10504-PA 1347 Ilk-RA 1..837 17..853 4185 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
Ilk-RA 1806 CG10504-RA 164..1000 17..853 4185 100 Plus
Ilk-RB 671 CG10504-RB 164..252 17..105 445 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21217790..21218336 271..817 2735 100 Plus
3L 28110227 3L 21217566..21217736 105..275 840 99.4 Plus
3L 28110227 3L 21217064..21217152 17..105 445 100 Plus
3L 28110227 3L 21218397..21218434 816..853 190 100 Plus
Blast to na_te.dros performed on 2015-02-12 12:45:20 has no hits.

BS06840.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:43 Download gff for BS06840.5prime
Subject Subject Range Query Range Percent Splice Strand
Ilk-PA 1..837 17..853 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:37:10 Download gff for BS06840.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10504-PA 1..837 17..853 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:03:38 Download gff for BS06840.5prime
Subject Subject Range Query Range Percent Splice Strand
Ilk-RA 157..1000 10..853 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:18:48 Download gff for BS06840.5prime
Subject Subject Range Query Range Percent Splice Strand
Ilk-RA 157..1000 10..853 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:18:48 Download gff for BS06840.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21217057..21217152 10..105 96 -> Plus
3L 21217567..21217732 106..271 100 -> Plus
3L 21217791..21218336 272..817 100 -> Plus
3L 21218399..21218434 818..853 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:03:38 Download gff for BS06840.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21210667..21210832 106..271 100 -> Plus
arm_3L 21210157..21210252 10..105 96 -> Plus
arm_3L 21210891..21211436 272..817 100 -> Plus
arm_3L 21211499..21211534 818..853 100   Plus

BS06840.complete Sequence

1379 bp (1379 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635639

> BS06840.complete
GAAGTTATCAGTCGACATGGAGGACATATTCCACTGGTGCCGCGAGGGCA
ACTCGATTCAAGTGCGCCTCTGGTTGGATGAAACGGAGCACGACAACAAT
TTGGGAGACGACCATGGCTTCAGCCCGTTGCATTGGGTGGCTAAAGAGGG
CCACGCCAAGCTTGTGGAGACTCTGTTGCAGCGCGGTTCGCGTGTGAACG
CCACCAATATGGGCGACGACATCCCACTCCATTTAGCGGCAGCTCATGGC
CACCGCGACGTGGTCCAGATGTTGATAAAAGAGCGCAGCGATGTGAATGC
GGTAAACGAGCATGGAAACACCCCCCTGCACTACGCCTGTTTTTGGGGCT
ATGACATGATCTGCGAGGATCTGCTTAATGCGGGAGCCCAGGTGGGAATC
GCAAACAAGGACGGGCACACACCTCTTGAAAAGGCCAAACCCAGTCTGGC
CAAGAGGCTTCAGGATCTTGTAGAAAAGAGCGGCAGAGAGGTTAAGGTTA
TCAGCTTCAAGGAACAAAGCTGGCAGGGATTGAAGACGAGATCCCGGGAT
GCTACTTTGTCCCGTTTCAAGGGAATCAGTATGGGAGACCTAGACCTGCA
TACCAAGCTGTCGGTGACGCCATCAGGAGAAACTTGGCGCGGACGCTGGC
AAAAGAACGATGTGGTAGCTAAGATCCTGGCCGTGCGTCAGTGCACGCCT
CGTATATCGCGAGATTTTAACGAGGAGTTTCCCAAGCTCCGCATCTTTTC
GCACCCTAACATTTTGCCTATTATTGGAGCATGCAATTCGCCACCCAATC
TGGTGACAATTAGTCAGTTTATGCCACGTTCTTCGCTGTTTAGCCTGCTG
CATGGAGCAACTGGCGTCGTGGTGGACACCAGCCAGGCGGTAAGCTTTGC
CTTGGATGTTGCGAGAGGAATGGCTTTCCTGCACTCGCTGGAGCGCATTA
TTCCAACATATCACCTGAACAGTCATCACGTGATGATCGACGATGATCTG
ACGGCGAGAATCAACATGGGCGATGCCAAATTCTCTTTCCAAGAGAAGGG
ACGCATCTATCAACCGGCTTGGATGTCGCCGGAAACATTGCAGCGCAAGC
AGGCGGATCGAAACTGGGAGGCCTGTGACATGTGGAGCTTTGCTATTCTT
ATTTGGGAGCTGACTACGCGCGAGGTACCCTTCGCCGAGTGGTCGCCCAT
GGAGTGCGGCATGAAAATTGCGTTGGAAGGTCTGCGGGTCAAGATTCCGC
CAGGCACATCGACGCACATGGCCAAGCTGATTTCAATCTGCATGAACGAG
GATCCCGGCAAGCGGCCCAAGTTCGACATGGTGGTTCCCATTCTGGAGAA
GATGCGCCGCTGAAAGCTTTCTAGACCAT

BS06840.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:22:56
Subject Length Description Subject Range Query Range Score Percent Strand
Ilk-RA 1347 CG10504-PA 1..1347 17..1363 6735 100 Plus
Ilk-RB 93 CG10504-PB 1..89 17..105 445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:22:57
Subject Length Description Subject Range Query Range Score Percent Strand
Ilk-RA 1806 CG10504-RA 164..1511 17..1364 6740 100 Plus
Ilk-RB 671 CG10504-RB 164..252 17..105 445 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:22:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21218397..21218945 816..1364 2745 100 Plus
3L 28110227 3L 21217790..21218336 271..817 2735 100 Plus
3L 28110227 3L 21217566..21217736 105..275 840 99.4 Plus
3L 28110227 3L 21217064..21217152 17..105 445 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:22:55 has no hits.

BS06840.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:05 Download gff for BS06840.complete
Subject Subject Range Query Range Percent Splice Strand
Ilk-RA 1..1347 17..1363 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:48 Download gff for BS06840.complete
Subject Subject Range Query Range Percent Splice Strand
Ilk-RA 164..1518 10..1364 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:07 Download gff for BS06840.complete
Subject Subject Range Query Range Percent Splice Strand
Ilk-RA 164..1509 17..1362 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:06 Download gff for BS06840.complete
Subject Subject Range Query Range Percent Splice Strand
Ilk-RA 164..1518 10..1364 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:23 Download gff for BS06840.complete
Subject Subject Range Query Range Percent Splice Strand
Ilk-RA 164..1509 17..1362 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:23 Download gff for BS06840.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21217064..21217152 17..105 100 -> Plus
3L 21217567..21217732 106..271 100 -> Plus
3L 21217791..21218336 272..817 100 -> Plus
3L 21218399..21218943 818..1362 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:07 Download gff for BS06840.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21210164..21210252 17..105 100 -> Plus
arm_3L 21210667..21210832 106..271 100 -> Plus
arm_3L 21210891..21211436 272..817 100 -> Plus
arm_3L 21211499..21212043 818..1362 100   Plus

BS06840.pep Sequence

Translation from 16 to 1362

> BS06840.pep
MEDIFHWCREGNSIQVRLWLDETEHDNNLGDDHGFSPLHWVAKEGHAKLV
ETLLQRGSRVNATNMGDDIPLHLAAAHGHRDVVQMLIKERSDVNAVNEHG
NTPLHYACFWGYDMICEDLLNAGAQVGIANKDGHTPLEKAKPSLAKRLQD
LVEKSGREVKVISFKEQSWQGLKTRSRDATLSRFKGISMGDLDLHTKLSV
TPSGETWRGRWQKNDVVAKILAVRQCTPRISRDFNEEFPKLRIFSHPNIL
PIIGACNSPPNLVTISQFMPRSSLFSLLHGATGVVVDTSQAVSFALDVAR
GMAFLHSLERIIPTYHLNSHHVMIDDDLTARINMGDAKFSFQEKGRIYQP
AWMSPETLQRKQADRNWEACDMWSFAILIWELTTREVPFAEWSPMECGMK
IALEGLRVKIPPGTSTHMAKLISICMNEDPGKRPKFDMVVPILEKMRR*

BS06840.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:27
Subject Length Description Subject Range Query Range Score Percent Strand
Ilk-PA 448 CG10504-PA 1..448 1..448 2391 100 Plus
Takl1-PA 393 CG31421-PA 3..266 185..443 212 25 Plus
Tnks-PA 1181 CG4719-PA 648..826 9..188 211 33.5 Plus
Tnks-PB 1520 CG4719-PB 648..826 9..188 211 33.5 Plus
Abl-PH 1504 CG4032-PH 370..625 191..446 207 24.3 Plus
Tnks-PA 1181 CG4719-PA 24..194 1..163 184 32.4 Plus
Tnks-PB 1520 CG4719-PB 24..194 1..163 184 32.4 Plus
Tnks-PA 1181 CG4719-PA 517..629 31..143 181 37.2 Plus
Tnks-PB 1520 CG4719-PB 517..629 31..143 181 37.2 Plus
Tnks-PA 1181 CG4719-PA 178..316 2..140 156 29.5 Plus