Clone Sequence Records
BS06840.3prime Sequence
951 bp (804 high quality bases) assembled on 2005-12-04
> BS06840.3prime
ATGGTCTAGAAAGCTTTCAGCGGCGCATCTTCTCCAGAATGGGAACCACC
ATGTCGAACTTGGGCCGCTTGCCGGGATCCTCGTTCATGCAGATTGAAAT
CAGCTTGGCCATGTGCGTCGATGTGCCTGGCGGAATCTTGACCCGCAGAC
CTTCCAACGCAATTTTCATGCCGCACTCCATGGGCGACCACTCGGCGAAG
GGTACCTCGCGCGTAGTCAGCTCCCAAATAAGAATAGCAAAGCTCCACAT
GTCACAGGCCTCCCAGTTTCGATCCGCCTGCTTGCGCTGCAATGTTTCCG
GCGACATCCAAGCCGGTTGATAGATGCGTCCCTTCTCTTGGAAAGAGAAT
TTGGCATCGCCCATGTTGATTCTCGCCGTCAGATCATCGTCGATCATCAC
GTGATGACTGTTCAGGTGATATGTTGGAATAATGCGCTCCAGCGAGTGCA
GGAAAGCCATTCCTCTCGCAACATCCAAGGCAAAGCTTACCGCCTGGCTG
GTGTCCACCACGACGCCAGTTGCTCCATGCAGCAGGCTAAACAGCGAAGA
ACGTGGCATAAACTGACTAATTGTCACCAGATTGGGTGGCGAATTGCATG
CTCCAATAATAGGCAAAATGTTAGGGTGCGAAAAGATGCGGAGCTTGGGA
AACTCCTCGTTAAAATCTCGCGATATACGAGGCGTGCACTGACGCACGGC
CAGGATCTTAGCTACCACATCGTTCTTTTGCCAGCGTCCGCGCCAAGTTT
CTCCTGATGGCGTCACCGACAGCTTGGTATGCAGGTCTAGGTCTCCCATA
CTGATTCCCCTTGAACGGGACAAAGTAGCATCCCGGGATCTCGTCTTCAA
TCCCTGCAGCTTTGTTCCTTGAAGCTGATACCCTTACCTCTCTGCCGCTC
TTTTCTACAAGATCCTGAAACCTCTTTGGCAGACTGGGTTTGGCCTTTTT
C
BS06840.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10504-PA | 1347 | Ilk-RA | 555..1347 | 809..17 | 3965 | 100 | Minus |
CG10504-PA | 1347 | Ilk-RA | 413..476 | 949..886 | 245 | 95.3 | Minus |
CG10504-PA | 1347 | Ilk-RA | 507..550 | 857..814 | 220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:47:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ilk-RA | 1806 | CG10504-RA | 576..1511 | 949..16 | 4525 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:47:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21218397..21218945 | 564..16 | 2745 | 100 | Minus |
3L | 28110227 | 3L | 21217948..21218336 | 949..563 | 1740 | 97.7 | Minus |
Blast to na_te.dros performed on 2015-02-03 12:47:32 has no hits.
BS06840.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:42 Download gff for
BS06840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ilk-PA | 412..1347 | 17..951 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:37:08 Download gff for
BS06840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10504-PA | 412..1347 | 17..951 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:53:54 Download gff for
BS06840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ilk-RA | 575..1511 | 16..951 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:44:34 Download gff for
BS06840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ilk-RA | 575..1511 | 16..951 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:44:34 Download gff for
BS06840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21217947..21218336 | 563..951 | 97 | -> | Minus |
3L | 21218399..21218945 | 16..562 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:53:54 Download gff for
BS06840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21211047..21211436 | 563..951 | 97 | -> | Minus |
arm_3L | 21211499..21212045 | 16..562 | 100 | | Minus |
BS06840.5prime Sequence
853 bp (851 high quality bases) assembled on 2005-12-04
> BS06840.5prime
GAAGTTATCAGTCGACATGGAGGACATATTCCACTGGTGCCGCGAGGGCA
ACTCGATTCAAGTGCGCCTCTGGTTGGATGAAACGGAGCACGACAACAAT
TTGGGAGACGACCATGGCTTCAGCCCGTTGCATTGGGTGGCTAAAGAGGG
CCACGCCAAGCTTGTGGAGACTCTGTTGCAGCGCGGTTCGCGTGTGAACG
CCACCAATATGGGCGACGACATCCCACTCCATTTAGCGGCAGCTCATGGC
CACCGCGACGTGGTCCAGATGTTGATAAAAGAGCGCAGCGATGTGAATGC
GGTAAACGAGCATGGAAACACCCCCCTGCACTACGCCTGTTTTTGGGGCT
ATGACATGATCTGCGAGGATCTGCTTAATGCGGGAGCCCAGGTGGGAATC
GCAAACAAGGACGGGCACACACCTCTTGAAAAGGCCAAACCCAGTCTGGC
CAAGAGGCTTCAGGATCTTGTAGAAAAGAGCGGCAGAGAGGTTAAGGTTA
TCAGCTTCAAGGAACAAAGCTGGCAGGGATTGAAGACGAGATCCCGGGAT
GCTACTTTGTCCCGTTTCAAGGGAATCAGTATGGGAGACCTAGACCTGCA
TACCAAGCTGTCGGTGACGCCATCAGGAGAAACTTGGCGCGGACGCTGGC
AAAAGAACGATGTGGTAGCTAAGATCCTGGCCGTGCGTCAGTGCACGCCT
CGTATATCGCGAGATTTTAACGAGGAGTTTCCCAAGCTCCGCATCTTTTC
GCACCCTAACATTTTGCCTATTATTGGAGCATGCAATTCGCCACCCAATC
TGGTGACAATTAGTCAGTTTATGCCACGTTCTTCGCTGTTTAGCCTGCTG
CAT
BS06840.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10504-PA | 1347 | Ilk-RA | 1..837 | 17..853 | 4185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:45:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ilk-RA | 1806 | CG10504-RA | 164..1000 | 17..853 | 4185 | 100 | Plus |
Ilk-RB | 671 | CG10504-RB | 164..252 | 17..105 | 445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:45:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21217790..21218336 | 271..817 | 2735 | 100 | Plus |
3L | 28110227 | 3L | 21217566..21217736 | 105..275 | 840 | 99.4 | Plus |
3L | 28110227 | 3L | 21217064..21217152 | 17..105 | 445 | 100 | Plus |
3L | 28110227 | 3L | 21218397..21218434 | 816..853 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:45:20 has no hits.
BS06840.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:43 Download gff for
BS06840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ilk-PA | 1..837 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:37:10 Download gff for
BS06840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10504-PA | 1..837 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:03:38 Download gff for
BS06840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ilk-RA | 157..1000 | 10..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:18:48 Download gff for
BS06840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ilk-RA | 157..1000 | 10..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:18:48 Download gff for
BS06840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21217057..21217152 | 10..105 | 96 | -> | Plus |
3L | 21217567..21217732 | 106..271 | 100 | -> | Plus |
3L | 21217791..21218336 | 272..817 | 100 | -> | Plus |
3L | 21218399..21218434 | 818..853 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:03:38 Download gff for
BS06840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21210667..21210832 | 106..271 | 100 | -> | Plus |
arm_3L | 21210157..21210252 | 10..105 | 96 | -> | Plus |
arm_3L | 21210891..21211436 | 272..817 | 100 | -> | Plus |
arm_3L | 21211499..21211534 | 818..853 | 100 | | Plus |
BS06840.complete Sequence
1379 bp (1379 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635639
> BS06840.complete
GAAGTTATCAGTCGACATGGAGGACATATTCCACTGGTGCCGCGAGGGCA
ACTCGATTCAAGTGCGCCTCTGGTTGGATGAAACGGAGCACGACAACAAT
TTGGGAGACGACCATGGCTTCAGCCCGTTGCATTGGGTGGCTAAAGAGGG
CCACGCCAAGCTTGTGGAGACTCTGTTGCAGCGCGGTTCGCGTGTGAACG
CCACCAATATGGGCGACGACATCCCACTCCATTTAGCGGCAGCTCATGGC
CACCGCGACGTGGTCCAGATGTTGATAAAAGAGCGCAGCGATGTGAATGC
GGTAAACGAGCATGGAAACACCCCCCTGCACTACGCCTGTTTTTGGGGCT
ATGACATGATCTGCGAGGATCTGCTTAATGCGGGAGCCCAGGTGGGAATC
GCAAACAAGGACGGGCACACACCTCTTGAAAAGGCCAAACCCAGTCTGGC
CAAGAGGCTTCAGGATCTTGTAGAAAAGAGCGGCAGAGAGGTTAAGGTTA
TCAGCTTCAAGGAACAAAGCTGGCAGGGATTGAAGACGAGATCCCGGGAT
GCTACTTTGTCCCGTTTCAAGGGAATCAGTATGGGAGACCTAGACCTGCA
TACCAAGCTGTCGGTGACGCCATCAGGAGAAACTTGGCGCGGACGCTGGC
AAAAGAACGATGTGGTAGCTAAGATCCTGGCCGTGCGTCAGTGCACGCCT
CGTATATCGCGAGATTTTAACGAGGAGTTTCCCAAGCTCCGCATCTTTTC
GCACCCTAACATTTTGCCTATTATTGGAGCATGCAATTCGCCACCCAATC
TGGTGACAATTAGTCAGTTTATGCCACGTTCTTCGCTGTTTAGCCTGCTG
CATGGAGCAACTGGCGTCGTGGTGGACACCAGCCAGGCGGTAAGCTTTGC
CTTGGATGTTGCGAGAGGAATGGCTTTCCTGCACTCGCTGGAGCGCATTA
TTCCAACATATCACCTGAACAGTCATCACGTGATGATCGACGATGATCTG
ACGGCGAGAATCAACATGGGCGATGCCAAATTCTCTTTCCAAGAGAAGGG
ACGCATCTATCAACCGGCTTGGATGTCGCCGGAAACATTGCAGCGCAAGC
AGGCGGATCGAAACTGGGAGGCCTGTGACATGTGGAGCTTTGCTATTCTT
ATTTGGGAGCTGACTACGCGCGAGGTACCCTTCGCCGAGTGGTCGCCCAT
GGAGTGCGGCATGAAAATTGCGTTGGAAGGTCTGCGGGTCAAGATTCCGC
CAGGCACATCGACGCACATGGCCAAGCTGATTTCAATCTGCATGAACGAG
GATCCCGGCAAGCGGCCCAAGTTCGACATGGTGGTTCCCATTCTGGAGAA
GATGCGCCGCTGAAAGCTTTCTAGACCAT
BS06840.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:22:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ilk-RA | 1347 | CG10504-PA | 1..1347 | 17..1363 | 6735 | 100 | Plus |
Ilk-RB | 93 | CG10504-PB | 1..89 | 17..105 | 445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:22:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ilk-RA | 1806 | CG10504-RA | 164..1511 | 17..1364 | 6740 | 100 | Plus |
Ilk-RB | 671 | CG10504-RB | 164..252 | 17..105 | 445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:22:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21218397..21218945 | 816..1364 | 2745 | 100 | Plus |
3L | 28110227 | 3L | 21217790..21218336 | 271..817 | 2735 | 100 | Plus |
3L | 28110227 | 3L | 21217566..21217736 | 105..275 | 840 | 99.4 | Plus |
3L | 28110227 | 3L | 21217064..21217152 | 17..105 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:22:55 has no hits.
BS06840.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:05 Download gff for
BS06840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ilk-RA | 1..1347 | 17..1363 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:48 Download gff for
BS06840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ilk-RA | 164..1518 | 10..1364 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:07 Download gff for
BS06840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ilk-RA | 164..1509 | 17..1362 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:06 Download gff for
BS06840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ilk-RA | 164..1518 | 10..1364 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:23 Download gff for
BS06840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ilk-RA | 164..1509 | 17..1362 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:23 Download gff for
BS06840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21217064..21217152 | 17..105 | 100 | -> | Plus |
3L | 21217567..21217732 | 106..271 | 100 | -> | Plus |
3L | 21217791..21218336 | 272..817 | 100 | -> | Plus |
3L | 21218399..21218943 | 818..1362 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:07 Download gff for
BS06840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21210164..21210252 | 17..105 | 100 | -> | Plus |
arm_3L | 21210667..21210832 | 106..271 | 100 | -> | Plus |
arm_3L | 21210891..21211436 | 272..817 | 100 | -> | Plus |
arm_3L | 21211499..21212043 | 818..1362 | 100 | | Plus |
BS06840.pep Sequence
Translation from 16 to 1362
> BS06840.pep
MEDIFHWCREGNSIQVRLWLDETEHDNNLGDDHGFSPLHWVAKEGHAKLV
ETLLQRGSRVNATNMGDDIPLHLAAAHGHRDVVQMLIKERSDVNAVNEHG
NTPLHYACFWGYDMICEDLLNAGAQVGIANKDGHTPLEKAKPSLAKRLQD
LVEKSGREVKVISFKEQSWQGLKTRSRDATLSRFKGISMGDLDLHTKLSV
TPSGETWRGRWQKNDVVAKILAVRQCTPRISRDFNEEFPKLRIFSHPNIL
PIIGACNSPPNLVTISQFMPRSSLFSLLHGATGVVVDTSQAVSFALDVAR
GMAFLHSLERIIPTYHLNSHHVMIDDDLTARINMGDAKFSFQEKGRIYQP
AWMSPETLQRKQADRNWEACDMWSFAILIWELTTREVPFAEWSPMECGMK
IALEGLRVKIPPGTSTHMAKLISICMNEDPGKRPKFDMVVPILEKMRR*
BS06840.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ilk-PA | 448 | CG10504-PA | 1..448 | 1..448 | 2391 | 100 | Plus |
Takl1-PA | 393 | CG31421-PA | 3..266 | 185..443 | 212 | 25 | Plus |
Tnks-PA | 1181 | CG4719-PA | 648..826 | 9..188 | 211 | 33.5 | Plus |
Tnks-PB | 1520 | CG4719-PB | 648..826 | 9..188 | 211 | 33.5 | Plus |
Abl-PH | 1504 | CG4032-PH | 370..625 | 191..446 | 207 | 24.3 | Plus |
Tnks-PA | 1181 | CG4719-PA | 24..194 | 1..163 | 184 | 32.4 | Plus |
Tnks-PB | 1520 | CG4719-PB | 24..194 | 1..163 | 184 | 32.4 | Plus |
Tnks-PA | 1181 | CG4719-PA | 517..629 | 31..143 | 181 | 37.2 | Plus |
Tnks-PB | 1520 | CG4719-PB | 517..629 | 31..143 | 181 | 37.2 | Plus |
Tnks-PA | 1181 | CG4719-PA | 178..316 | 2..140 | 156 | 29.5 | Plus |