Clone Sequence Records
BS06841.3prime Sequence
923 bp (787 high quality bases) assembled on 2005-12-04
> BS06841.3prime
ATGGTCTAGAAAGCTTCTAGCGCTTGCGATCCCTGGAGCGATCGCCATCC
CGATGCTTGTGCCCCCCTCGGCTGCCGTGGTTCCCGTTGCCTCCACCGCC
GCCACCACCTCCTCCTCCGCTTCTTCCGTCTCCACCACCACCGCTGTTCC
GACGCGACGAGGAGGAGGAGTACCGACTGTGCTTGCCGGAATTGGAGACG
GAGTTGCGATACTTGTCGCCATCACCTAGATTATTGCTACTGCCTGGGTT
TCCAGACCGATCTTTCTTGGAGTAGTATTCAGAGCGTTCTCGCGAGGATT
TCGACTTCCTGTGCTTGCTGTGCGGCGAATTGGAGCGCGTGGGCGACCTC
GAGTAGTGACGTGACTTTTTCTTATGCTTCGGCGGCGAACGGGAGCGCGA
GCGGGAGGATCGACTGCGGTGGGTCTTCTTAGTGCGCTCGCGACTAGGCG
ACCTGGACCTGGGTGATCGGGAGCGAGGTGTCCGCGAATGGGTGCGCGTC
CTGGATCGCGAGCGTGACCTCGAATCCTTTTGCGGCGACTTTTCCGATGG
CAAGGGCAGTGGGATAGCACGCTGGATGAAGCCACCCCACGCATTGTGCG
AGCCATTGTTCCGATCCACGGTGATTACAGCCGGCGGTGTGTTTGCCTCC
TTCGTTTTGTTGCGCGCATCAATGTACCGCTTTTTCAGCTCGTCCACGGC
CGCCTCCAGTTTCTCCACCACCGGCTTGGAACGCATGTACAGCTCCATCA
CACGGTAGCAGATATCCGTAATGTCCGCCATGGGCACCCGAAAAATGCCG
AACCACGGCGGGCTGTTGGGCAGAGGTATGTTGAGCTTGCGGGCACTCAG
GTAGATGCAGGCGCATGCAATCGCCTCTGGTGTGTAGCGCATAAAAACGT
CCGTCCTCAGCGAGTCATTCATG
BS06841.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16903-PA | 1683 | CG16903-RA | 777..1683 | 923..17 | 4535 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:50:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16903-RA | 1936 | CG16903-RA | 884..1790 | 923..17 | 4535 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:50:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2078831..2079452 | 302..923 | 3110 | 100 | Plus |
| X | 23542271 | X | 2078489..2078774 | 17..302 | 1430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:50:02 has no hits.
BS06841.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:44 Download gff for
BS06841.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16903-PA | 777..1683 | 17..923 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:37:11 Download gff for
BS06841.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16903-PA | 777..1683 | 17..923 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:47:44 Download gff for
BS06841.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16903-RA | 884..1795 | 11..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:21:41 Download gff for
BS06841.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16903-RA | 884..1795 | 11..923 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:21:41 Download gff for
BS06841.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2078484..2078774 | 11..302 | 98 | <- | Plus |
| X | 2078832..2079452 | 303..923 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:47:44 Download gff for
BS06841.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1972517..1972807 | 11..302 | 98 | <- | Plus |
| arm_X | 1972865..1973485 | 303..923 | 100 | | Plus |
BS06841.5prime Sequence
872 bp (836 high quality bases) assembled on 2005-12-04
> BS06841.5prime
GAAGTTATCAGTCGACATGGCCACCCGTGGGGCCGGCTCGACTGTGGTCC
ACACGACGGTGACAGCGCTGACGGTGGAGACGATCACCAATGTCCTGACC
ACGGTGACTTCGTTCCATTCGAACAGCGTCAACATTTCGAACAACAACAG
CAGCAGTGGAGCGGCCCCGGGGGCGGATGCAGCTGGCGGCGATGCAGGGG
GCGTGGCAGCGGCTCAGGCGGACGCCAACAAGCCTATCTATCCTCGGCTC
TTTAACCGCATCGTGCTGACGCTGGAGAACAGCCTCATTCCGGAGGGCAA
AATCGATGTGACGCCATCCAGCCAGGATGGACTGGACCATGAGACGGAGA
AGGACCTGCGCATACTGGGCTGCGAGCTTATTCAGACAGCCGGAATTTTG
CTGCGCTTGCCGCAGGTTGCCATGGCCACCGGCCAGGTGCTGTTCCAGCG
CTTCTTCTACTCGAAGAGCTTTGTGCGGCACAACATGGAGACTGTGGCCA
TGAGCTGCGTGTGCCTGGCGTCCAAGATCGAGGAGGCGCCGCGCCGCATT
AGAGACGTGATCAATGTGTTCCATCACATCAAGCAAGTGCGGGCCCAAAA
GGAAATCTCGCCCATGGTGCTAGATCCTTACTACACGAACCTCAAGATGC
AGGTGATCAAGGCCGAGCGGCGCGTCCTCAAGGAACTGGGCTTCTGTGTA
CACGTGAAGCATCCGCACAAGCTGATCGTGATGTATCTGCAGGTGCTTCA
GTACGAGAAGCACGAGAAGCTGATGCAGCTCTCCTGGAACTTCATGAATG
ACTCGCTGAGGACGGACGTTTTTATGCGCTACACACCAGAGGCGATTGCA
TGCGCCTGCATCTACCTGAGTG
BS06841.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16903-PA | 1683 | CG16903-RA | 1..856 | 17..872 | 4280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:26:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16903-RA | 1936 | CG16903-RA | 108..963 | 17..872 | 4280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:25:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2079714..2080298 | 601..17 | 2925 | 100 | Minus |
| X | 23542271 | X | 2079373..2079644 | 872..601 | 1360 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:26:00 has no hits.
BS06841.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:45 Download gff for
BS06841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16903-PA | 1..856 | 17..872 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:37:12 Download gff for
BS06841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16903-PA | 1..856 | 17..872 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:09:54 Download gff for
BS06841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16903-RA | 103..963 | 9..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:49:16 Download gff for
BS06841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16903-RA | 103..963 | 9..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:49:16 Download gff for
BS06841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2079373..2079644 | 601..872 | 100 | <- | Minus |
| X | 2079715..2080303 | 9..600 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:09:54 Download gff for
BS06841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1973406..1973677 | 601..872 | 100 | <- | Minus |
| arm_X | 1973748..1974336 | 9..600 | 99 | | Minus |
BS06841.complete Sequence
1715 bp assembled on 2007-10-25
GenBank Submission: FJ638797
> BS06841.complete
GAAGTTATCAGTCGACATGGCCACCCGTGGGGCCGGCTCGACTGTGGTCC
ACACGACGGTGACAGCGCTGACGGTGGAGACGATCACCAATGTCCTGACC
ACGGTGACTTCGTTCCATTCGAACAGCGTCAACATTTCGAACAACAACAG
CAGCAGTGGAGCGGCCCCGGGGGCGGATGCAGCTGGCGGCGATGCAGGGG
GCGTGGCAGCGGCTCAGGCGGACGCCAACAAGCCTATCTATCCTCGGCTC
TTTAACCGCATCGTGCTGACGCTGGAGAACAGCCTCATTCCGGAGGGCAA
AATCGATGTGACGCCATCCAGCCAGGATGGACTGGACCATGAGACGGAGA
AGGACCTGCGCATACTGGGCTGCGAGCTTATTCAGACAGCCGGAATTTTG
CTGCGCTTGCCGCAGGTTGCCATGGCCACCGGCCAGGTGCTGTTCCAGCG
CTTCTTCTACTCGAAGAGCTTTGTGCGGCACAACATGGAGACTGTGGCCA
TGAGCTGCGTGTGCCTGGCGTCCAAGATCGAGGAGGCGCCGCGCCGCATT
AGAGACGTGATCAATGTGTTCCATCACATCAAGCAAGTGCGGGCCCAAAA
GGAAATCTCGCCCATGGTGCTAGATCCTTACTACACGAACCTCAAGATGC
AGGTGATCAAGGCCGAGCGGCGCGTCCTCAAGGAACTGGGCTTCTGTGTA
CACGTGAAGCATCCGCACAAGCTGATCGTGATGTATCTGCAGGTGCTTCA
GTACGAGAAGCACGAGAAGCTGATGCAGCTCTCCTGGAACTTCATGAATG
ACTCGCTGAGGACGGACGTTTTTATGCGCTACACACCAGAGGCGATTGCA
TGCGCCTGCATCTACCTGAGTGCCCGCAAGCTCAACATACCTCTGCCCAA
CAGCCCGCCGTGGTTCGGCATTTTTCGGGTGCCCATGGCGGACATTACGG
ATATCTGCTACCGTGTGATGGAGCTGTACATGCGTTCCAAGCCGGTGGTG
GAGAAACTGGAGGCGGCCGTGGACGAGCTGAAAAAGCGGTACATTGATGC
GCGCAACAAAACGAAGGAGGCAAACACACCGCCGGCTGTAATCACCGTGG
ATCGGAACAATGGCTCGCACAATGCGTGGGGTGGCTTCATCCAGCGTGCT
ATCCCACTGCCCTTGCCATCGGAAAAGTCGCCGCAAAAGGATTCGAGGTC
ACGCTCGCGATCCAGGACGCGCACCCATTCGCGGACACCTCGCTCCCGAT
CACCCAGGTCCAGGTCGCCTAGTCGCGAGCGCACTAAGAAGACCCACCGC
AGTCGATCCTCCCGCTCGCGCTCCCGTTCGCCGCCGAAGCATAAGAAAAA
GTCACGTCACTACTCGAGGTCGCCCACGCGCTCCAATTCGCCGCACAGCA
AGCACAGGAAGTCGAAATCCTCGCGAGAACGCTCTGAATACTACTCCAAG
AAAGATCGGTCTGGAAACCCAGGCAGTAGCAATAATCTAGGTGATGGCGA
CAAGTATCGCAACTCCGTCTCCAATTCCGGCAAGCACAGTCGGTACTCCT
CCTCCTCGTCGCGTCGGAACAGCGGTGGTGGTGGAGACGGAAGAAGCGGA
GGAGGAGGTGGTGGCGGCGGTGGAGGCAACGGGAACCACGGCAGCCGAGG
GGGGCACAAGCATCGGGATGGCGATCGCTCCAGGGATCGCAAGCGCTAGA
AGCTTTCTAGACCAT
BS06841.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:29:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16903-RA | 1683 | CG16903-PA | 1..1683 | 17..1699 | 8415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:29:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16903-RA | 1936 | CG16903-RA | 108..1790 | 17..1699 | 8415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:29:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2078831..2079644 | 1414..601 | 4070 | 100 | Minus |
| X | 23542271 | X | 2079714..2080298 | 601..17 | 2925 | 100 | Minus |
| X | 23542271 | X | 2078489..2078774 | 1699..1414 | 1430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:29:40 has no hits.
BS06841.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:06:17 Download gff for
BS06841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16903-RA | 1..1683 | 17..1699 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:35:31 Download gff for
BS06841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16903-RA | 81..1773 | 9..1705 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:16:29 Download gff for
BS06841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16903-RA | 108..1790 | 17..1699 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:45 Download gff for
BS06841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16903-RA | 86..1768 | 17..1699 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:49 Download gff for
BS06841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16903-RA | 108..1790 | 17..1699 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:49 Download gff for
BS06841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2078489..2078774 | 1414..1699 | 100 | <- | Minus |
| X | 2078832..2079644 | 601..1413 | 100 | <- | Minus |
| X | 2079715..2080298 | 17..600 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:16:29 Download gff for
BS06841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1972522..1972807 | 1414..1699 | 100 | <- | Minus |
| arm_X | 1972865..1973677 | 601..1413 | 100 | <- | Minus |
| arm_X | 1973748..1974331 | 17..600 | 100 | | Minus |
BS06841.pep Sequence
Translation from 16 to 1698
> BS06841.pep
MATRGAGSTVVHTTVTALTVETITNVLTTVTSFHSNSVNISNNNSSSGAA
PGADAAGGDAGGVAAAQADANKPIYPRLFNRIVLTLENSLIPEGKIDVTP
SSQDGLDHETEKDLRILGCELIQTAGILLRLPQVAMATGQVLFQRFFYSK
SFVRHNMETVAMSCVCLASKIEEAPRRIRDVINVFHHIKQVRAQKEISPM
VLDPYYTNLKMQVIKAERRVLKELGFCVHVKHPHKLIVMYLQVLQYEKHE
KLMQLSWNFMNDSLRTDVFMRYTPEAIACACIYLSARKLNIPLPNSPPWF
GIFRVPMADITDICYRVMELYMRSKPVVEKLEAAVDELKKRYIDARNKTK
EANTPPAVITVDRNNGSHNAWGGFIQRAIPLPLPSEKSPQKDSRSRSRSR
TRTHSRTPRSRSPRSRSPSRERTKKTHRSRSSRSRSRSPPKHKKKSRHYS
RSPTRSNSPHSKHRKSKSSRERSEYYSKKDRSGNPGSSNNLGDGDKYRNS
VSNSGKHSRYSSSSSRRNSGGGGDGRSGGGGGGGGGGNGNHGSRGGHKHR
DGDRSRDRKR*
BS06841.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:37:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16903-PA | 560 | CG16903-PA | 1..560 | 1..560 | 2918 | 100 | Plus |
| CycK-PC | 400 | CG15218-PC | 14..243 | 99..325 | 302 | 31.4 | Plus |
| CycK-PB | 400 | CG15218-PB | 14..243 | 99..325 | 302 | 31.4 | Plus |
| CycK-PA | 400 | CG15218-PA | 14..243 | 99..325 | 302 | 31.4 | Plus |
| CycT-PC | 1097 | CG6292-PC | 5..488 | 49..554 | 282 | 24.9 | Plus |
