Clone Sequence Records
BS06842.3prime Sequence
848 bp (826 high quality bases) assembled on 2005-12-04
> BS06842.3prime
ATGGTCTAGAAAGCTTTCAAGCGAACTTAACATCCGGCTTAGACAATGTC
AGAACATCCTCTTGGATGGGAGACAAAGTTAGCTTCAGGTTGTGTTCCTT
GGCCAATTTGCAAGTCGCGTCGAACTGAGCGTTCGAATAAGATTTACGTG
AAAAGCTCACTTGTTGATCTGAAGTGTTCTTAAACCGCCTAATCAAATCT
TCCATTTTGTCATTGAAATCCTGTTCCTTTGCCTCCTTCTCCAGCTGAGC
AGGCGTTTTGCGGACGTCTGACTTTGAGTTCTTTAACGAGAAGGCACGTG
CCCATATATCGCGACTGGCCTCCTCATACTTGCTGATTCTCTTGTTCATG
CTGATAATCTCGTCGCTGATCTCCTTGTTCGCCGGCTGCTTGGCCTGCGC
CTGCAGGTAAGCGTTGCGGGCCAAGTTGTACTCGCCCAGAGCGGCCAGGG
CGCGTCCCTCCTGGAAGAGCGCCTTGCAAGACGGATTGCCCATGGTCAGG
TGCCGTAAGGCCTTCATCATGATGCAGGCGCGCTTCGGCTTGTTCATCTT
GTTGTAAACGATCATCAGGTTTTGGTTCAGGGTAGTAAGCAGTTCAGTTT
GCTTGCGCTCCTCCTCGTCATTGGCCATTCGGCAGTAGTTCAGTGAGCTC
ACTGCCCGTTCGAAGGCAGTTGCTGCACTCTGATAGCGTCCGAGCTTCAC
CGAGTCCTTGCCATGTAGGTGCAAGTCGACAGCCTTCGGATAGACCACAC
AAAACTTGTCGCGGTCTTCTTGGGGGATAGCATCGATGCCCTTCGCATCT
CCTATGAGCGAGTAGTCAATTACCTCCACTTTTAAGAGCGCATCCGCC
BS06842.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4735-PA | 1368 | shu-RA | 537..1368 | 848..17 | 4135 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:52:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shu-RA | 1694 | CG4735-RA | 629..1460 | 848..17 | 4145 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:52:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23841695..23842252 | 17..574 | 2790 | 100 | Plus |
| 2R | 25286936 | 2R | 23842328..23842601 | 575..848 | 1355 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:52:40 has no hits.
BS06842.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:46 Download gff for
BS06842.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shu-PA | 537..1368 | 17..848 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:37:14 Download gff for
BS06842.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4735-PA | 537..1368 | 17..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:46:16 Download gff for
BS06842.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shu-RA | 629..1468 | 7..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:37 Download gff for
BS06842.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shu-RA | 629..1468 | 7..848 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:37 Download gff for
BS06842.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23841687..23842252 | 7..574 | 99 | <- | Plus |
| 2R | 23842328..23842601 | 575..848 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:46:16 Download gff for
BS06842.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19729210..19729775 | 7..574 | 99 | <- | Plus |
| arm_2R | 19729851..19730124 | 575..848 | 99 | | Plus |
BS06842.5prime Sequence
902 bp (798 high quality bases) assembled on 2005-12-04
> BS06842.5prime
GAAGTTATCAGTCGACATGGAAGAAAACTTCGAACCGTACACCCCACAGT
TGCTCAAGAATCCCTTGTCCTATTCGGATCTCGTGAAAAAGGGCGTTGAG
TTCGAGGTCGACAATTCGCAGCAGAACCATGCCAGGGATCTGGGTCTCGA
CAGCGACAGCGACAGCGACTACGAGGATGCGCTGGACGTGGACGGCGAGG
AGCTACGTTCACCGTGGACATATTCATTCGACGAACTGCGTGCGCTGATG
AGCGAGATCGACGAAAACATTTACAAGCGGATCACTCGCACCGGTCACGT
GGATCGGGAGGCGGTGCCGAACAAGGCTAGGGTCTCGGTTCGGTACAGTG
GCTACTGGGAGGGCGAGACCGCTCCCTTCGACTCCTCCCTGCTGCGGGGC
AGCAAATTCGTGTTTGAAACTGGCCAGGGAACGGTGGTTGAAGGCCTGGA
GGTCGCCGTCCGCAGCATGCGTCCTTACGAGCAGGCCGAGTTTATAATCT
CCTACAAGCTGCTTTTCGGAGAACTCGGTTGCCCTCCGCGGATCAAGCCC
AAGGCGGATGCGCTCTTTAAAGTGGAGGTAATTGACTACTCGCTCATAGG
AGATGCGAAGGGCATCGATGCTATCCCCCAAGAAGACCGCGACAAGTTTT
GTGTGGTCTATCCGAAGGCTGTCGACTTGCACCTACATGGCAAGGACTCG
GTGAAGCTCGGACGCTATCAGAGTGCAGCAACTGCCTTCGAACGGGCAGT
GAGCTCACTGAACTACTGCCGAATGGCCAATGACGAGGAGGAGCGCAAGC
AAACTGAACTGCTTACTACCCTGAACCAAAACCTGATGATCGTTTACAAC
AAGATGAACAAGCCGAAGCGCGCCTGCATCATGATGAAGGCCTTACGGCA
CC
BS06842.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4735-PA | 1368 | shu-RA | 1..886 | 17..902 | 4430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:07:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shu-RA | 1694 | CG4735-RA | 93..978 | 17..902 | 4430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:07:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23842328..23843078 | 826..76 | 3755 | 100 | Minus |
| 2R | 25286936 | 2R | 23842177..23842252 | 902..827 | 380 | 100 | Minus |
| 2R | 25286936 | 2R | 23843135..23843194 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:07:20 has no hits.
BS06842.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:47 Download gff for
BS06842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shu-PA | 1..886 | 17..902 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:37:15 Download gff for
BS06842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4735-PA | 1..886 | 17..902 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:13:13 Download gff for
BS06842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shu-RA | 93..978 | 17..902 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:39:59 Download gff for
BS06842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shu-RA | 93..978 | 17..902 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:39:59 Download gff for
BS06842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23842177..23842252 | 827..902 | 100 | <- | Minus |
| 2R | 23842328..23843078 | 76..826 | 100 | <- | Minus |
| 2R | 23843136..23843194 | 17..75 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:13:13 Download gff for
BS06842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19729700..19729775 | 827..902 | 100 | <- | Minus |
| arm_2R | 19729851..19730601 | 76..826 | 100 | <- | Minus |
| arm_2R | 19730659..19730717 | 17..75 | 100 | | Minus |
BS06842.complete Sequence
1400 bp (1400 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635640
> BS06842.complete
GAAGTTATCAGTCGACATGGAAGAAAACTTCGAACCGTACACCCCACAGT
TGCTCAAGAATCCCTTGTCCTATTCGGATCTCGTGAAAAAGGGCGTTGAG
TTCGAGGTCGACAATTCGCAGCAGAACCATGCCAGGGATCTGGGTCTCGA
CAGCGACAGCGACAGCGACTACGAGGATGCGCTGGACGTGGACGGCGAGG
AGCTACGTTCACCGTGGACATATTCATTCGACGAACTGCGTGCGCTGATG
AGCGAGATCGACGAAAACATTTACAAGCGGATCACTCGCACCGGTCACGT
GGATCGGGAGGCGGTGCCGAACAAGGCTAGGGTCTCGGTTCGGTACAGTG
GCTACTGGGAGGGCGAGACCGCTCCCTTCGACTCCTCCCTGCTGCGGGGC
AGCAAATTCGTGTTTGAAACTGGCCAGGGAACGGTGGTTGAAGGCCTGGA
GGTCGCCGTCCGCAGCATGCGTCCTTACGAGCAGGCCGAGTTTATAATCT
CCTACAAGCTGCTTTTCGGAGAACTCGGTTGCCCTCCGCGGATCAAGCCC
AAGGCGGATGCGCTCTTTAAAGTGGAGGTAATTGACTACTCGCTCATAGG
AGATGCGAAGGGCATCGATGCTATCCCCCAAGAAGACCGCGACAAGTTTT
GTGTGGTCTATCCGAAGGCTGTCGACTTGCACCTACATGGCAAGGACTCG
GTGAAGCTCGGACGCTATCAGAGTGCAGCAACTGCCTTCGAACGGGCAGT
GAGCTCACTGAACTACTGCCGAATGGCCAATGACGAGGAGGAGCGCAAGC
AAACTGAACTGCTTACTACCCTGAACCAAAACCTGATGATCGTTTACAAC
AAGATGAACAAGCCGAAGCGCGCCTGCATCATGATGAAGGCCTTACGGCA
CCTGACCATGGGCAATCCGTCTTGCAAGGCGCTCTTCCAGGAGGGACGCG
CCCTGGCCGCTCTGGGCGAGTACAACTTGGCCCGCAACGCTTACCTGCAG
GCGCAGGCCAAGCAGCCGGCGAACAAGGAGATCAGCGACGAGATTATCAG
CATGAACAAGAGAATCAGCAAGTATGAGGAGGCCAGTCGCGATATATGGG
CACGTGCCTTCTCGTTAAAGAACTCAAAGTCAGACGTCCGCAAAACGCCT
GCTCAGCTGGAGAAGGAGGCAAAGGAACAGGATTTCAATGACAAAATGGA
AGATTTGATTAGGCGGTTTAAGAACACTTCAGATCAACAAGTGAGCTTTT
CACGTAAATCTTATTCGAACGCTCAGTTCGACGCGACTTGCAAATTGGCC
AAGGAACACAACCTGAAGCTAACTTTGTCTCCCATCCAAGAGGATGTTCT
GACATTGTCTAAGCCGGATGTTAAGTTCGCTTGAAAGCTTTCTAGACCAT
BS06842.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:50:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shu-RA | 1368 | CG4735-PA | 1..1368 | 17..1384 | 6840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:50:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shu-RA | 1694 | CG4735-RA | 93..1460 | 17..1384 | 6840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:50:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23842328..23843078 | 826..76 | 3755 | 100 | Minus |
| 2R | 25286936 | 2R | 23841695..23842252 | 1384..827 | 2790 | 100 | Minus |
| 2R | 25286936 | 2R | 23843135..23843194 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:50:36 has no hits.
BS06842.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:06 Download gff for
BS06842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shu-RA | 1..1368 | 17..1384 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:50 Download gff for
BS06842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shu-RA | 86..1461 | 17..1394 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:54 Download gff for
BS06842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shu-RA | 93..1459 | 17..1383 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:07 Download gff for
BS06842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shu-RA | 86..1461 | 17..1394 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:22 Download gff for
BS06842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shu-RA | 93..1459 | 17..1383 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:22 Download gff for
BS06842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23841696..23842252 | 827..1383 | 100 | <- | Minus |
| 2R | 23842328..23843078 | 76..826 | 100 | <- | Minus |
| 2R | 23843136..23843194 | 17..75 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:54 Download gff for
BS06842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19729219..19729775 | 827..1383 | 100 | <- | Minus |
| arm_2R | 19729851..19730601 | 76..826 | 100 | <- | Minus |
| arm_2R | 19730659..19730717 | 17..75 | 100 | | Minus |
BS06842.pep Sequence
Translation from 16 to 1383
> BS06842.pep
MEENFEPYTPQLLKNPLSYSDLVKKGVEFEVDNSQQNHARDLGLDSDSDS
DYEDALDVDGEELRSPWTYSFDELRALMSEIDENIYKRITRTGHVDREAV
PNKARVSVRYSGYWEGETAPFDSSLLRGSKFVFETGQGTVVEGLEVAVRS
MRPYEQAEFIISYKLLFGELGCPPRIKPKADALFKVEVIDYSLIGDAKGI
DAIPQEDRDKFCVVYPKAVDLHLHGKDSVKLGRYQSAATAFERAVSSLNY
CRMANDEEERKQTELLTTLNQNLMIVYNKMNKPKRACIMMKALRHLTMGN
PSCKALFQEGRALAALGEYNLARNAYLQAQAKQPANKEISDEIISMNKRI
SKYEEASRDIWARAFSLKNSKSDVRKTPAQLEKEAKEQDFNDKMEDLIRR
FKNTSDQQVSFSRKSYSNAQFDATCKLAKEHNLKLTLSPIQEDVLTLSKP
DVKFA*
BS06842.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shu-PA | 455 | CG4735-PA | 1..455 | 1..455 | 2339 | 100 | Plus |
| CG30075-PA | 195 | CG30075-PA | 36..188 | 206..358 | 282 | 38.6 | Plus |
