Clone Sequence Records
BS06844.3prime Sequence
908 bp (855 high quality bases) assembled on 2005-12-04
> BS06844.3prime
ATGGTCTAGAAAGCTTTTAGAGCTCGTCGTGGCCGAGGAACTTCTTCAGA
TAGGCCTGCAGCTCCGGCAGTGAGCGGCTGCCTTCGTACTCGTTCTGGCG
CTGACCATTCTTGTAAAGGAAGAGAGTTGGATAGCCCTCCACCTGCTGGT
CGATGCACACTTGCTTGTTCTCCGGCGCCGTGCAGTCAACCTTGGCAATT
TTCACGGAACTCTGAGCCTGGTGCGTTTCCGTGGCCAGCTGCTCCCAGGT
GGGTTGCAGCTTCTGGCAGTGTCCACACCACGGAGCATAGAACTTAATGA
AGGCAACGCCCTCGGCAATGGCTTGGTCGAACTCGTCCTCGCCAGTCAGC
TGTTGTGGAGTCAGCTTCTTGGCTGCGTCCTCCTCGCCGGCAACCTCCTC
GATAACCACCTTCTCATCGCCGGCCTCGCCAGCGGTCTTCTCCAGTGGCA
CGCCCACCATTTTCTCCACGTACGTTTTCAGCGTGGACAGATCGCGAGCA
CCCGAGTACTTTTCAATCTTTTTGCCATCCTCGATCCAGAGAAGAGTGGG
ATACCCCTTGACCTCAAAGTCCTGGCAGATGGAACGGAACTGGGTGCAGT
CGATCTTCGAGATAGTTACGGTAGGCTCTTTAATCAGCTCCTTGGCCAGG
TCCTCCCACGTGGGTGCCAAACGCTGACAATGACTGCACCAGGGTGCAAA
GAATTTGACAAAGTGATTGCCGGTGGACACGTGCTTGGCAAAGGTGTCTT
CGGTAAGGTCAACCACCTTGCCAATATTAAGGTTCTCGACCTGCTCGCGC
TTGACCTCGCCCAGATCCGCCTCAGCGGGTGCGCTCAGTTCCTTATTGAT
GAAATCGGTAATGGCGGGCAAGTCGCGAGTGCCCTTTAACTTGACCCGAT
CCTCTTCG
BS06844.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1837-PA | 1251 | CG1837-RA | 372..1251 | 896..17 | 4375 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:18:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
prtp-RC | 1740 | CG1837-RC | 443..1335 | 908..16 | 4405 | 99.7 | Minus |
prtp-RB | 1746 | CG1837-RB | 449..1341 | 908..16 | 4405 | 99.7 | Minus |
prtp-RD | 1964 | CG1837-RD | 667..1559 | 908..16 | 4405 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:18:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11718829..11719489 | 676..16 | 3305 | 100 | Minus |
X | 23542271 | X | 11718536..11718770 | 908..674 | 1115 | 98.3 | Minus |
Blast to na_te.dros performed on 2015-02-06 12:18:09 has no hits.
BS06844.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:50 Download gff for
BS06844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1837-PA | 360..1251 | 17..908 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:37:20 Download gff for
BS06844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1837-PA | 360..1251 | 17..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:42:30 Download gff for
BS06844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
prtp-RD | 667..1568 | 3..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:50:51 Download gff for
BS06844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
prtp-RD | 667..1568 | 3..908 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:50:51 Download gff for
BS06844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11718536..11718770 | 674..908 | 98 | -> | Minus |
X | 11718832..11719498 | 3..673 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:42:30 Download gff for
BS06844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11612569..11612803 | 674..908 | 98 | -> | Minus |
arm_X | 11612865..11613531 | 3..673 | 99 | | Minus |
BS06844.5prime Sequence
899 bp (759 high quality bases) assembled on 2005-12-04
> BS06844.5prime
GAAGTTATCAGTCGACATGTTGACCAGGTCCATTTTATCCGTTGCCGTGT
GTGGCCTCCTCCTGTCGCCCCTCCTGCCCATCACCCGTGCGTCCCAGGAG
GAGGACACCGGCAAACAGGACAAGCAGTTCACCGTGGAACTGGACCCAGA
AACCTTCGACACTGCGATTGCCGGCGGCAATGTCTTCGTCAAGTTCTTTG
CTCCATGGTGCGGCCATTGCAAGCGTATTCAGCCGCTGTGGGAACAGCTG
GCCGAGATCATGAATGTGGATAACCCCAAGGTGATCATCGCCAAGGTGGA
CTGCACCAAGCACCAGGGACTCTGCGCCACGCACCAGGTTACCGGCTATC
CCACACTGCGCCTCTTTAAGCTGGGCGAAGAGGAATCGGTCAAGTTTAAG
GGCACTCGCGACTTGCCCGCCATTACCGATTTCATCAATAAGGAACTGAG
CGCACCCGCTGAGGCGGATCTGGGCGAGGTCAAGCGCGAGCAGGTCGAGA
ACCTTAATATTGGCAAGGTGGTTGACCTTACCGAAGACACCTTTGCCAAG
CACGTGTCCACCGGCAATCACTTTGTCAAATTCTTTGCACCCTGGTGCAG
TCATTGTCAGCGTTTGGCACCCACGTGGGAGGACCTGGCCAAGGAGCTGA
TTAAAGAGCCTACCGTAACTATCTCGAAGATCGACTGCACCCAGTTCCGT
TCCATCTGCCAGGACTTTGAGGTCAAGGGGTATCCCACTCTTCTCTGGAT
CGAGGATGGCAAAAAGATTGAAAAGTACTCGGGTGCTCGCGATCTGTCCA
CGCTGAAAACGTACGTGGAGAAAATGGTGGGCGTGCCACTGGAGAAGACC
GCTGGCGAGGCCGGCGATGAGAAAGTGGGTATCGAGGAGGTTGCCGGCG
BS06844.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1837-PA | 1251 | CG1837-RA | 1..883 | 17..899 | 4365 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:00:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
prtp-RC | 1740 | CG1837-RC | 83..966 | 16..899 | 4390 | 99.8 | Plus |
prtp-RB | 1746 | CG1837-RB | 89..972 | 16..899 | 4390 | 99.8 | Plus |
prtp-RA | 1763 | CG1837-RA | 106..989 | 16..899 | 4390 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:00:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11718367..11718770 | 207..610 | 2020 | 100 | Plus |
X | 23542271 | X | 11718829..11719120 | 608..899 | 1430 | 99.3 | Plus |
X | 23542271 | X | 11717073..11717267 | 16..210 | 975 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:00:39 has no hits.
BS06844.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:51 Download gff for
BS06844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1837-PA | 1..883 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:37:21 Download gff for
BS06844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1837-PA | 1..883 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:27:37 Download gff for
BS06844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
prtp-RA | 97..989 | 8..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:28:31 Download gff for
BS06844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
prtp-RA | 97..989 | 8..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:28:31 Download gff for
BS06844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11717064..11717264 | 8..207 | 98 | -> | Plus |
X | 11718368..11718770 | 208..610 | 100 | -> | Plus |
X | 11718832..11719120 | 611..899 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:27:37 Download gff for
BS06844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11611097..11611297 | 8..207 | 98 | -> | Plus |
arm_X | 11612401..11612803 | 208..610 | 100 | -> | Plus |
arm_X | 11612865..11613153 | 611..899 | 99 | | Plus |
BS06844.complete Sequence
1283 bp (1283 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635641
> BS06844.complete
GAAGTTATCAGTCGACATGTTGACCAGGTCCATTTTATCCGTTGCCGTGT
GTGGCCTCCTCCTGTCGCCCCTCCTGCCCATCACCCGTGCGTCCCAGGAG
GAGGACACCGGCAAACAGGACAAGCAGTTCACCGTGGAACTGGACCCAGA
AACCTTCGACACTGCGATTGCCGGCGGCAATGTCTTCGTCAAGTTCTTTG
CTCCATGGTGCGGCCATTGCAAGCGTATTCAGCCGCTGTGGGAACAGCTG
GCCGAGATCATGAATGTGGATAACCCCAAGGTGATCATCGCCAAGGTGGA
CTGCACCAAGCACCAGGGACTCTGCGCCACGCACCAGGTTACCGGCTATC
CCACACTGCGCCTCTTTAAGCTGGGCGAAGAGGAATCGGTCAAGTTTAAG
GGCACTCGCGACTTGCCCGCCATTACCGATTTCATCAATAAGGAACTGAG
CGCACCCGCTGAGGCGGATCTGGGCGAGGTCAAGCGCGAGCAGGTCGAGA
ACCTTAATATTGGCAAGGTGGTTGACCTTACCGAAGACACCTTTGCCAAG
CACGTGTCCACCGGCAATCACTTTGTCAAATTCTTTGCACCCTGGTGCAG
TCATTGTCAGCGTTTGGCACCCACGTGGGAGGACCTGGCCAAGGAGCTGA
TTAAAGAGCCTACCGTAACTATCTCGAAGATCGACTGCACCCAGTTCCGT
TCCATCTGCCAGGACTTTGAGGTCAAGGGGTATCCCACTCTTCTCTGGAT
CGAGGATGGCAAAAAGATTGAAAAGTACTCGGGTGCTCGCGATCTGTCCA
CGCTGAAAACGTACGTGGAGAAAATGGTGGGCGTGCCACTGGAGAAGACC
GCTGGCGAGGCCGGCGATGAGAAGGTGGTTATCGAGGAGGTTGCCGGCGA
GGAGGACGCAGCCAAGAAGCTGACTCCACAACAGCTGACTGGCGAGGACG
AGTTCGACCAAGCCATTGCCGAGGGCGTTGCCTTCATTAAGTTCTATGCT
CCGTGGTGTGGACACTGCCAGAAGCTGCAACCCACCTGGGAGCAGCTGGC
CACGGAAACGCACCAGGCTCAGAGTTCCGTGAAAATTGCCAAGGTTGACT
GCACGGCGCCGGAGAACAAGCAAGTGTGCATCGACCAGCAGGTGGAGGGC
TATCCAACTCTCTTCCTTTACAAGAATGGTCAGCGCCAGAACGAGTACGA
AGGCAGCCGCTCACTGCCGGAGCTGCAGGCCTATCTGAAGAAGTTCCTCG
GCCACGACGAGCTCTAAAAGCTTTCTAGACCAT
BS06844.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:03:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
prtp-RC | 1251 | CG1837-PC | 1..1251 | 17..1267 | 6255 | 100 | Plus |
prtp-RB | 1251 | CG1837-PB | 1..1251 | 17..1267 | 6255 | 100 | Plus |
prtp-RA | 1251 | CG1837-PA | 1..1251 | 17..1267 | 6255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:03:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
prtp-RC | 1740 | CG1837-RC | 83..1335 | 16..1268 | 6265 | 100 | Plus |
prtp-RB | 1746 | CG1837-RB | 89..1341 | 16..1268 | 6265 | 100 | Plus |
prtp-RA | 1763 | CG1837-RA | 106..1358 | 16..1268 | 6265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:03:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11718829..11719489 | 608..1268 | 3305 | 100 | Plus |
X | 23542271 | X | 11718367..11718770 | 207..610 | 2020 | 100 | Plus |
X | 23542271 | X | 11717073..11717267 | 16..210 | 975 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:03:52 has no hits.
BS06844.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:09 Download gff for
BS06844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1837-RA | 1..1251 | 17..1267 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:51 Download gff for
BS06844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1837-RA | 97..1367 | 8..1281 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:57 Download gff for
BS06844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
prtp-RA | 112..1355 | 22..1265 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:09 Download gff for
BS06844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1837-RA | 97..1367 | 8..1281 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:55 Download gff for
BS06844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
prtp-RA | 112..1355 | 22..1265 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:55 Download gff for
BS06844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11717079..11717264 | 22..207 | 100 | -> | Plus |
X | 11718368..11718770 | 208..610 | 100 | -> | Plus |
X | 11718832..11719486 | 611..1265 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:57 Download gff for
BS06844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11611112..11611297 | 22..207 | 100 | -> | Plus |
arm_X | 11612401..11612803 | 208..610 | 100 | -> | Plus |
arm_X | 11612865..11613519 | 611..1265 | 100 | | Plus |
BS06844.pep Sequence
Translation from 16 to 1266
> BS06844.pep
MLTRSILSVAVCGLLLSPLLPITRASQEEDTGKQDKQFTVELDPETFDTA
IAGGNVFVKFFAPWCGHCKRIQPLWEQLAEIMNVDNPKVIIAKVDCTKHQ
GLCATHQVTGYPTLRLFKLGEEESVKFKGTRDLPAITDFINKELSAPAEA
DLGEVKREQVENLNIGKVVDLTEDTFAKHVSTGNHFVKFFAPWCSHCQRL
APTWEDLAKELIKEPTVTISKIDCTQFRSICQDFEVKGYPTLLWIEDGKK
IEKYSGARDLSTLKTYVEKMVGVPLEKTAGEAGDEKVVIEEVAGEEDAAK
KLTPQQLTGEDEFDQAIAEGVAFIKFYAPWCGHCQKLQPTWEQLATETHQ
AQSSVKIAKVDCTAPENKQVCIDQQVEGYPTLFLYKNGQRQNEYEGSRSL
PELQAYLKKFLGHDEL*
BS06844.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
prtp-PC | 416 | CG1837-PC | 1..416 | 1..416 | 2202 | 100 | Plus |
prtp-PB | 416 | CG1837-PB | 1..416 | 1..416 | 2202 | 100 | Plus |
prtp-PA | 416 | CG1837-PA | 1..416 | 1..416 | 2202 | 100 | Plus |
prtp-PD | 353 | CG1837-PD | 2..353 | 65..416 | 1875 | 100 | Plus |
prtp-PD | 353 | CG1837-PD | 106..349 | 40..272 | 486 | 39 | Plus |
CG9302-PA | 510 | CG9302-PA | 165..498 | 56..407 | 325 | 25.1 | Plus |
prtp-PD | 353 | CG1837-PD | 226..348 | 22..144 | 260 | 44.1 | Plus |