Clone BS06844 Report

Search the DGRC for BS06844

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:68
Well:44
Vector:pDNR-Dual
Associated Gene/Transcriptprtp-RA
Protein status:BS06844.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06844.3prime Sequence

908 bp (855 high quality bases) assembled on 2005-12-04

> BS06844.3prime
ATGGTCTAGAAAGCTTTTAGAGCTCGTCGTGGCCGAGGAACTTCTTCAGA
TAGGCCTGCAGCTCCGGCAGTGAGCGGCTGCCTTCGTACTCGTTCTGGCG
CTGACCATTCTTGTAAAGGAAGAGAGTTGGATAGCCCTCCACCTGCTGGT
CGATGCACACTTGCTTGTTCTCCGGCGCCGTGCAGTCAACCTTGGCAATT
TTCACGGAACTCTGAGCCTGGTGCGTTTCCGTGGCCAGCTGCTCCCAGGT
GGGTTGCAGCTTCTGGCAGTGTCCACACCACGGAGCATAGAACTTAATGA
AGGCAACGCCCTCGGCAATGGCTTGGTCGAACTCGTCCTCGCCAGTCAGC
TGTTGTGGAGTCAGCTTCTTGGCTGCGTCCTCCTCGCCGGCAACCTCCTC
GATAACCACCTTCTCATCGCCGGCCTCGCCAGCGGTCTTCTCCAGTGGCA
CGCCCACCATTTTCTCCACGTACGTTTTCAGCGTGGACAGATCGCGAGCA
CCCGAGTACTTTTCAATCTTTTTGCCATCCTCGATCCAGAGAAGAGTGGG
ATACCCCTTGACCTCAAAGTCCTGGCAGATGGAACGGAACTGGGTGCAGT
CGATCTTCGAGATAGTTACGGTAGGCTCTTTAATCAGCTCCTTGGCCAGG
TCCTCCCACGTGGGTGCCAAACGCTGACAATGACTGCACCAGGGTGCAAA
GAATTTGACAAAGTGATTGCCGGTGGACACGTGCTTGGCAAAGGTGTCTT
CGGTAAGGTCAACCACCTTGCCAATATTAAGGTTCTCGACCTGCTCGCGC
TTGACCTCGCCCAGATCCGCCTCAGCGGGTGCGCTCAGTTCCTTATTGAT
GAAATCGGTAATGGCGGGCAAGTCGCGAGTGCCCTTTAACTTGACCCGAT
CCTCTTCG

BS06844.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1837-PA 1251 CG1837-RA 372..1251 896..17 4375 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:18:13
Subject Length Description Subject Range Query Range Score Percent Strand
prtp-RC 1740 CG1837-RC 443..1335 908..16 4405 99.7 Minus
prtp-RB 1746 CG1837-RB 449..1341 908..16 4405 99.7 Minus
prtp-RD 1964 CG1837-RD 667..1559 908..16 4405 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:18:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11718829..11719489 676..16 3305 100 Minus
X 23542271 X 11718536..11718770 908..674 1115 98.3 Minus
Blast to na_te.dros performed on 2015-02-06 12:18:09 has no hits.

BS06844.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:50 Download gff for BS06844.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1837-PA 360..1251 17..908 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:37:20 Download gff for BS06844.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1837-PA 360..1251 17..908 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:42:30 Download gff for BS06844.3prime
Subject Subject Range Query Range Percent Splice Strand
prtp-RD 667..1568 3..908 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:50:51 Download gff for BS06844.3prime
Subject Subject Range Query Range Percent Splice Strand
prtp-RD 667..1568 3..908 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:50:51 Download gff for BS06844.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11718536..11718770 674..908 98 -> Minus
X 11718832..11719498 3..673 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:42:30 Download gff for BS06844.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11612569..11612803 674..908 98 -> Minus
arm_X 11612865..11613531 3..673 99   Minus

BS06844.5prime Sequence

899 bp (759 high quality bases) assembled on 2005-12-04

> BS06844.5prime
GAAGTTATCAGTCGACATGTTGACCAGGTCCATTTTATCCGTTGCCGTGT
GTGGCCTCCTCCTGTCGCCCCTCCTGCCCATCACCCGTGCGTCCCAGGAG
GAGGACACCGGCAAACAGGACAAGCAGTTCACCGTGGAACTGGACCCAGA
AACCTTCGACACTGCGATTGCCGGCGGCAATGTCTTCGTCAAGTTCTTTG
CTCCATGGTGCGGCCATTGCAAGCGTATTCAGCCGCTGTGGGAACAGCTG
GCCGAGATCATGAATGTGGATAACCCCAAGGTGATCATCGCCAAGGTGGA
CTGCACCAAGCACCAGGGACTCTGCGCCACGCACCAGGTTACCGGCTATC
CCACACTGCGCCTCTTTAAGCTGGGCGAAGAGGAATCGGTCAAGTTTAAG
GGCACTCGCGACTTGCCCGCCATTACCGATTTCATCAATAAGGAACTGAG
CGCACCCGCTGAGGCGGATCTGGGCGAGGTCAAGCGCGAGCAGGTCGAGA
ACCTTAATATTGGCAAGGTGGTTGACCTTACCGAAGACACCTTTGCCAAG
CACGTGTCCACCGGCAATCACTTTGTCAAATTCTTTGCACCCTGGTGCAG
TCATTGTCAGCGTTTGGCACCCACGTGGGAGGACCTGGCCAAGGAGCTGA
TTAAAGAGCCTACCGTAACTATCTCGAAGATCGACTGCACCCAGTTCCGT
TCCATCTGCCAGGACTTTGAGGTCAAGGGGTATCCCACTCTTCTCTGGAT
CGAGGATGGCAAAAAGATTGAAAAGTACTCGGGTGCTCGCGATCTGTCCA
CGCTGAAAACGTACGTGGAGAAAATGGTGGGCGTGCCACTGGAGAAGACC
GCTGGCGAGGCCGGCGATGAGAAAGTGGGTATCGAGGAGGTTGCCGGCG

BS06844.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG1837-PA 1251 CG1837-RA 1..883 17..899 4365 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
prtp-RC 1740 CG1837-RC 83..966 16..899 4390 99.8 Plus
prtp-RB 1746 CG1837-RB 89..972 16..899 4390 99.8 Plus
prtp-RA 1763 CG1837-RA 106..989 16..899 4390 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:00:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11718367..11718770 207..610 2020 100 Plus
X 23542271 X 11718829..11719120 608..899 1430 99.3 Plus
X 23542271 X 11717073..11717267 16..210 975 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:00:39 has no hits.

BS06844.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:51 Download gff for BS06844.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1837-PA 1..883 17..899 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:37:21 Download gff for BS06844.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1837-PA 1..883 17..899 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:27:37 Download gff for BS06844.5prime
Subject Subject Range Query Range Percent Splice Strand
prtp-RA 97..989 8..899 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:28:31 Download gff for BS06844.5prime
Subject Subject Range Query Range Percent Splice Strand
prtp-RA 97..989 8..899 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:28:31 Download gff for BS06844.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11717064..11717264 8..207 98 -> Plus
X 11718368..11718770 208..610 100 -> Plus
X 11718832..11719120 611..899 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:27:37 Download gff for BS06844.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11611097..11611297 8..207 98 -> Plus
arm_X 11612401..11612803 208..610 100 -> Plus
arm_X 11612865..11613153 611..899 99   Plus

BS06844.complete Sequence

1283 bp (1283 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635641

> BS06844.complete
GAAGTTATCAGTCGACATGTTGACCAGGTCCATTTTATCCGTTGCCGTGT
GTGGCCTCCTCCTGTCGCCCCTCCTGCCCATCACCCGTGCGTCCCAGGAG
GAGGACACCGGCAAACAGGACAAGCAGTTCACCGTGGAACTGGACCCAGA
AACCTTCGACACTGCGATTGCCGGCGGCAATGTCTTCGTCAAGTTCTTTG
CTCCATGGTGCGGCCATTGCAAGCGTATTCAGCCGCTGTGGGAACAGCTG
GCCGAGATCATGAATGTGGATAACCCCAAGGTGATCATCGCCAAGGTGGA
CTGCACCAAGCACCAGGGACTCTGCGCCACGCACCAGGTTACCGGCTATC
CCACACTGCGCCTCTTTAAGCTGGGCGAAGAGGAATCGGTCAAGTTTAAG
GGCACTCGCGACTTGCCCGCCATTACCGATTTCATCAATAAGGAACTGAG
CGCACCCGCTGAGGCGGATCTGGGCGAGGTCAAGCGCGAGCAGGTCGAGA
ACCTTAATATTGGCAAGGTGGTTGACCTTACCGAAGACACCTTTGCCAAG
CACGTGTCCACCGGCAATCACTTTGTCAAATTCTTTGCACCCTGGTGCAG
TCATTGTCAGCGTTTGGCACCCACGTGGGAGGACCTGGCCAAGGAGCTGA
TTAAAGAGCCTACCGTAACTATCTCGAAGATCGACTGCACCCAGTTCCGT
TCCATCTGCCAGGACTTTGAGGTCAAGGGGTATCCCACTCTTCTCTGGAT
CGAGGATGGCAAAAAGATTGAAAAGTACTCGGGTGCTCGCGATCTGTCCA
CGCTGAAAACGTACGTGGAGAAAATGGTGGGCGTGCCACTGGAGAAGACC
GCTGGCGAGGCCGGCGATGAGAAGGTGGTTATCGAGGAGGTTGCCGGCGA
GGAGGACGCAGCCAAGAAGCTGACTCCACAACAGCTGACTGGCGAGGACG
AGTTCGACCAAGCCATTGCCGAGGGCGTTGCCTTCATTAAGTTCTATGCT
CCGTGGTGTGGACACTGCCAGAAGCTGCAACCCACCTGGGAGCAGCTGGC
CACGGAAACGCACCAGGCTCAGAGTTCCGTGAAAATTGCCAAGGTTGACT
GCACGGCGCCGGAGAACAAGCAAGTGTGCATCGACCAGCAGGTGGAGGGC
TATCCAACTCTCTTCCTTTACAAGAATGGTCAGCGCCAGAACGAGTACGA
AGGCAGCCGCTCACTGCCGGAGCTGCAGGCCTATCTGAAGAAGTTCCTCG
GCCACGACGAGCTCTAAAAGCTTTCTAGACCAT

BS06844.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:03:53
Subject Length Description Subject Range Query Range Score Percent Strand
prtp-RC 1251 CG1837-PC 1..1251 17..1267 6255 100 Plus
prtp-RB 1251 CG1837-PB 1..1251 17..1267 6255 100 Plus
prtp-RA 1251 CG1837-PA 1..1251 17..1267 6255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:03:54
Subject Length Description Subject Range Query Range Score Percent Strand
prtp-RC 1740 CG1837-RC 83..1335 16..1268 6265 100 Plus
prtp-RB 1746 CG1837-RB 89..1341 16..1268 6265 100 Plus
prtp-RA 1763 CG1837-RA 106..1358 16..1268 6265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:03:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11718829..11719489 608..1268 3305 100 Plus
X 23542271 X 11718367..11718770 207..610 2020 100 Plus
X 23542271 X 11717073..11717267 16..210 975 100 Plus
Blast to na_te.dros performed on 2014-11-27 21:03:52 has no hits.

BS06844.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:09 Download gff for BS06844.complete
Subject Subject Range Query Range Percent Splice Strand
CG1837-RA 1..1251 17..1267 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:51 Download gff for BS06844.complete
Subject Subject Range Query Range Percent Splice Strand
CG1837-RA 97..1367 8..1281 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:57 Download gff for BS06844.complete
Subject Subject Range Query Range Percent Splice Strand
prtp-RA 112..1355 22..1265 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:09 Download gff for BS06844.complete
Subject Subject Range Query Range Percent Splice Strand
CG1837-RA 97..1367 8..1281 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:55 Download gff for BS06844.complete
Subject Subject Range Query Range Percent Splice Strand
prtp-RA 112..1355 22..1265 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:55 Download gff for BS06844.complete
Subject Subject Range Query Range Percent Splice Strand
X 11717079..11717264 22..207 100 -> Plus
X 11718368..11718770 208..610 100 -> Plus
X 11718832..11719486 611..1265 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:57 Download gff for BS06844.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11611112..11611297 22..207 100 -> Plus
arm_X 11612401..11612803 208..610 100 -> Plus
arm_X 11612865..11613519 611..1265 100   Plus

BS06844.pep Sequence

Translation from 16 to 1266

> BS06844.pep
MLTRSILSVAVCGLLLSPLLPITRASQEEDTGKQDKQFTVELDPETFDTA
IAGGNVFVKFFAPWCGHCKRIQPLWEQLAEIMNVDNPKVIIAKVDCTKHQ
GLCATHQVTGYPTLRLFKLGEEESVKFKGTRDLPAITDFINKELSAPAEA
DLGEVKREQVENLNIGKVVDLTEDTFAKHVSTGNHFVKFFAPWCSHCQRL
APTWEDLAKELIKEPTVTISKIDCTQFRSICQDFEVKGYPTLLWIEDGKK
IEKYSGARDLSTLKTYVEKMVGVPLEKTAGEAGDEKVVIEEVAGEEDAAK
KLTPQQLTGEDEFDQAIAEGVAFIKFYAPWCGHCQKLQPTWEQLATETHQ
AQSSVKIAKVDCTAPENKQVCIDQQVEGYPTLFLYKNGQRQNEYEGSRSL
PELQAYLKKFLGHDEL*

BS06844.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:14
Subject Length Description Subject Range Query Range Score Percent Strand
prtp-PC 416 CG1837-PC 1..416 1..416 2202 100 Plus
prtp-PB 416 CG1837-PB 1..416 1..416 2202 100 Plus
prtp-PA 416 CG1837-PA 1..416 1..416 2202 100 Plus
prtp-PD 353 CG1837-PD 2..353 65..416 1875 100 Plus
prtp-PD 353 CG1837-PD 106..349 40..272 486 39 Plus
CG9302-PA 510 CG9302-PA 165..498 56..407 325 25.1 Plus
prtp-PD 353 CG1837-PD 226..348 22..144 260 44.1 Plus