Clone Sequence Records
BS06846.3prime Sequence
969 bp (805 high quality bases) assembled on 2005-12-04
> BS06846.3prime
ATGGTCTAGAAAGCTTTTAGCGACAGAAATAGGGCTGACCCAGGTTGGCA
TTGTTCTCATTGCGCATGCCGGCAAAGAACCGATTGATATCCTCCTCGGT
CACTACCTTCTTGCTGGCGGCGAATGCCTGCAGGTATTCCTTTAGCTTGT
CCTTCATGCGATTGTATTCGGTAATCGCATCGATTTGCTGTGTCCGGTCA
ATGGAGGCCAGTGCCCGGATTCCTTGCTCATAACTGGAATTCTCTTCAGC
CCGCTTCATGCCGCGCTCCTCGTACGTCTTAGCCGAATCCTCGACATCCA
GCAGAAACTCCACGGCAAGTTCCTTGTAAAGCGACAGGCATTCGGAGCAC
TGACAGAGTGATTTTCGCCAGTCATTTGTCCAGAAAGCAGCTCCCTGATG
CTCCTTGGTTGGTTTGGGCCGACGACAATCGTCCAGTTTGGCGCGCTTCT
GGCTGGGTTCGCCTTCGTCTGGCTGAGATTCACCTTCAGGAACTTTCATG
ATATCGCAGATGCTGCGGTCCAACTCGTTCTTCAGCTGGCTATCGTCAGC
CTCCGGCTTGTCCTCCTTCGCATCTTCTAGCACAGGCTGCAGGGCTAATC
CAGTGTAGTCCTTTAGGAAGGGTTTGGCATCCATGCAGCCATCGCAAATC
ATTTCGCTGCAGACATCCAGCCACTTGTCGCTGGCGCCGGGCGCTTTCAT
GTGCGGCAAGTGGAACCAGTCCTCGCAGATGGCGCACTGCAGCATAACCT
CCTCAACGGTGCGATCGGGATCGGGATAGGGTCGCTTGCACTTGCAGTAC
AGCCCCTGGAAGTTCTGGTTATACAGATTGCCCACGTTACGTGGTTGAAC
GCCCTCGACTTGTGGGTTCAGGGAGCACTTGCCCAGACGCTGGGTGGGAC
AATCGCAGCGGAAATTCCGCTTAGTATAGAGCTCCACCAGTTCGTGGTGC
TCGTGACAGCGATAGGAGC
BS06846.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15141-PA | 1215 | CG15141-RA | 263..1215 | 969..17 | 4765 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:21:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15141-RA | 1683 | CG15141-RA | 403..1356 | 969..16 | 4770 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:21:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17411043..17411619 | 969..393 | 2885 | 100 | Minus |
2L | 23513712 | 2L | 17412790..17413172 | 398..16 | 1900 | 99.7 | Minus |
Blast to na_te.dros performed 2015-02-06 12:21:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 4857..4906 | 205..157 | 121 | 74 | Minus |
BS06846.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:54 Download gff for
BS06846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15141-PA | 263..1215 | 17..969 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:37:25 Download gff for
BS06846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15141-PA | 263..1215 | 17..969 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:42:57 Download gff for
BS06846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15141-RA | 403..1361 | 11..969 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:51:18 Download gff for
BS06846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15141-RA | 403..1361 | 11..969 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:51:18 Download gff for
BS06846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17411043..17411618 | 394..969 | 100 | -> | Minus |
2L | 17412795..17413177 | 11..393 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:42:57 Download gff for
BS06846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17411043..17411618 | 394..969 | 100 | -> | Minus |
arm_2L | 17412795..17413177 | 11..393 | 99 | | Minus |
BS06846.5prime Sequence
929 bp (838 high quality bases) assembled on 2005-12-04
> BS06846.5prime
GAAGTTATCAGTCGACATGAGCGAGTCGAATGCCACAGATGGTGTCCACG
AGGTTGAGGAGTCCAATCCGCTGGAGCAGTCGACCATTACGATGCTAGAT
GTCCTGGAACAGGAAAAGGAGCTGGAGGACGAGTACGCCGCAGTGCTGGG
CGCCTCCGATGAGAAGTCGTGCACTTACGCCAAGGGCCCCATCGGCCGAC
AGGCTCTGTACTCGTGCCTCACTTGTTGCCCCGAGGCGCGCGAGGATCTG
GACAAGGCCGCAGGAGTCTGCTTGGCCTGCTCCTATCGCTGTCACGAGCA
CCACGAACTGGTGGAGCTCTATACTAAGCGGAATTTCCGCTGCGATTGTC
CCACCCAGCGTCTGGGCAAGTGCTCCCTGAACCCACAAGTCGAGGGCGTT
CAACCACGTAACGTGGGCAATCTGTATAACCAGAACTTCCAGGGGCTGTA
CTGCAAGTGCAAGCGACCCTATCCCGATCCCGATCGCACCGTTGAGGAGG
TTATGCTGCAGTGCGCCATCTGCGAGGACTGGTTCCACTTGCCGCACATG
AAAGCGCCCGGCGCCAGCGACAAGTGGCTGGATGTCTGCAGCGAAATGAT
TTGCGATGGCTGCATGGATGCCAAACCCTTCCTAAAGGACTACACTGGAT
TAGCCCTGCAGCCTGTGCTAGAAGATGCGAAGGAGGACAAGCCGGAGGCT
GACGATAGCCAGCTGAAGAACGAGTTGGACCGCAGCATCTGCGATATCAT
GAAAGTTCCTGAAGGTGAATCTCAGCCAGACGAAGGCGAACCCAGCCAGA
AGCGCGCCAAACTGGACGATTGTCGTCGGCCCAAACCAACCNAGGAGCAT
CAGGGAGCTGCTTTCTGGACAANTGACTGGGCGAAATCACTCTGTCAGTG
CTCCGAATGCCTGTCGCTTTACAAGGAAC
BS06846.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15141-PA | 1215 | CG15141-RA | 1..864 | 17..880 | 4282 | 99.7 | Plus |
CG15141-PA | 1215 | CG15141-RA | 868..913 | 884..929 | 230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:39:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15141-RA | 1683 | CG15141-RA | 138..1053 | 14..929 | 4513 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:39:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17410778..17411619 | 14..855 | 4199 | 99.9 | Plus |
2L | 23513712 | 2L | 17412790..17412869 | 850..929 | 329 | 93.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:39:09 has no hits.
BS06846.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:55 Download gff for
BS06846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15141-PA | 1..913 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:37:26 Download gff for
BS06846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15141-PA | 1..913 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:01:31 Download gff for
BS06846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15141-RA | 133..1053 | 9..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:02:19 Download gff for
BS06846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15141-RA | 133..1053 | 9..929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:02:19 Download gff for
BS06846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17410773..17411618 | 9..854 | 99 | -> | Plus |
2L | 17412795..17412869 | 855..929 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:01:31 Download gff for
BS06846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17410773..17411618 | 9..854 | 99 | -> | Plus |
arm_2L | 17412795..17412869 | 855..929 | 96 | | Plus |
BS06846.complete Sequence
1247 bp (1247 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635642
> BS06846.complete
GAAGTTATCAGTCGACATGAGCGAGTCGAATGCCACAGATGGTGTCCACG
AGGTTGAGGAGTCCAATCCGCTGGAGCAGTCGACCATTACGATGCTAGAT
GTCCTGGAACAGGAAAAGGAGCTGGAGGACGAGTACGCCGCAGTGCTGGG
CGCCTCCGATGAGAAGTCGTGCACTTACGCCAAGGGCCCCATCGGCCGAC
AGGCTCTGTACTCGTGCCTCACTTGTTGCCCCGAGGCGCGCGAGGATCTG
GACAAGGCCGCAGGAGTCTGCTTGGCCTGCTCCTATCGCTGTCACGAGCA
CCACGAACTGGTGGAGCTCTATACTAAGCGGAATTTCCGCTGCGATTGTC
CCACCCAGCGTCTGGGCAAGTGCTCCCTGAACCCACAAGTCGAGGGCGTT
CAACCACGTAACGTGGGCAATCTGTATAACCAGAACTTCCAGGGGCTGTA
CTGCAAGTGCAAGCGACCCTATCCCGATCCCGATCGCACCGTTGAGGAGG
TTATGCTGCAGTGCGCCATCTGCGAGGACTGGTTCCACTTGCCGCACATG
AAAGCGCCCGGCGCCAGCGACAAGTGGCTGGATGTCTGCAGCGAAATGAT
TTGCGATGGCTGCATGGATGCCAAACCCTTCCTAAAGGACTACACTGGAT
TAGCCCTGCAGCCTGTGCTAGAAGATGCGAAGGAGGACAAGCCGGAGGCT
GACGATAGCCAGCTGAAGAACGAGTTGGACCGCAGCATCTGCGATATCAT
GAAAGTTCCTGAAGGTGAATCTCAGCCAGACGAAGGCGAACCCAGCCAGA
AGCGCGCCAAACTGGACGATTGTCGTCGGCCCAAACCAACCAAGGAGCAT
CAGGGAGCTGCTTTCTGGACAAATGACTGGCGAAAATCACTCTGTCAGTG
CTCCGAATGCCTGTCGCTTTACAAGGAACTTGCCGTGGAGTTTCTGCTGG
ATGTCGAGGATTCGGCTAAGACGTACGAGGAGCGCGGCATGAAGCGGGCT
GAAGAGAATTCCAGTTATGAGCAAGGAATCCGGGCACTGGCCTCCATTGA
CCGGACACAGCAAATCGATGCGATTACCGAATACAATCGCATGAAGGACA
AGCTAAAGGAATACCTGCAGGCATTCGCCGCCAGCAAGAAGGTAGTGACC
GAGGAGGATATCAATCGGTTCTTTGCCGGCATGCGCAATGAGAACAATGC
CAACCTGGGTCAGCCCTATTTCTGTCGCTAAAAGCTTTCTAGACCAT
BS06846.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:09:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15141-RA | 1215 | CG15141-PA | 1..1215 | 17..1231 | 6075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15141-RA | 1683 | CG15141-RA | 138..1356 | 14..1232 | 6095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17410778..17411619 | 14..855 | 4210 | 100 | Plus |
2L | 23513712 | 2L | 17412790..17413172 | 850..1232 | 1900 | 99.7 | Plus |
Blast to na_te.dros performed 2014-11-27 14:09:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 4857..4906 | 1043..1091 | 121 | 74 | Plus |
BS06846.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:10 Download gff for
BS06846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15141-RA | 1..1215 | 17..1231 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:59 Download gff for
BS06846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15141-RA | 117..1345 | 9..1237 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:21 Download gff for
BS06846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15141-RA | 141..1353 | 17..1229 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:10 Download gff for
BS06846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15141-RA | 117..1345 | 9..1237 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:53 Download gff for
BS06846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15141-RA | 141..1353 | 17..1229 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:53 Download gff for
BS06846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17410781..17411618 | 17..854 | 100 | -> | Plus |
2L | 17412795..17413169 | 855..1229 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:21 Download gff for
BS06846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17410781..17411618 | 17..854 | 100 | -> | Plus |
arm_2L | 17412795..17413169 | 855..1229 | 100 | | Plus |
BS06846.pep Sequence
Translation from 16 to 1230
> BS06846.pep
MSESNATDGVHEVEESNPLEQSTITMLDVLEQEKELEDEYAAVLGASDEK
SCTYAKGPIGRQALYSCLTCCPEAREDLDKAAGVCLACSYRCHEHHELVE
LYTKRNFRCDCPTQRLGKCSLNPQVEGVQPRNVGNLYNQNFQGLYCKCKR
PYPDPDRTVEEVMLQCAICEDWFHLPHMKAPGASDKWLDVCSEMICDGCM
DAKPFLKDYTGLALQPVLEDAKEDKPEADDSQLKNELDRSICDIMKVPEG
ESQPDEGEPSQKRAKLDDCRRPKPTKEHQGAAFWTNDWRKSLCQCSECLS
LYKELAVEFLLDVEDSAKTYEERGMKRAEENSSYEQGIRALASIDRTQQI
DAITEYNRMKDKLKEYLQAFAASKKVVTEEDINRFFAGMRNENNANLGQP
YFCR*
BS06846.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15141-PA | 404 | CG15141-PA | 1..404 | 1..404 | 2186 | 100 | Plus |