Clone Sequence Records
BS06847.3prime Sequence
875 bp (784 high quality bases) assembled on 2005-12-04
> BS06847.3prime
ATGGTCTAGAAAGCTTTCACGATTGTCGCAGCTCGGGCAGTCCTTTAATT
ATAACATCCAGCGCCCTCAGGTCCTTGTTGACGGTATCGCTCAGCACCTC
CATGGCGCGCTGCTGCATCGTCAGAAAGGTCTTCATCTCGTCCTCCGCTT
CCTTGTCGAGGGCATACTCGGCACCACCGTTGGCTGCGAATTGATTGCGC
TGCATGCGCATCTGGGAGAGGAGCTCGCTGAGTCGGCCCTTGAATTGGGT
GGGTGCGGAGACGACAGCCAGCATGTTCTGTAGCTTGGTGCGCAAGGCCT
CCTCCTCGGGCGTCAGGGAAGTGCCCACCTTGCGGGTGCACTCTTGTTTC
ACTATTATCCTTAGTATGCGATGACTGAGCTCGGCCAGTTTCCGTTTATG
TTCAAGTATCTTCGCTGTGGCAGTGGCATGGCGCTTCTTGAGTTCTGTCA
GCTCACTCTCCACCTTCTTTATGTACAATGCATGCGTGTCCGTTTCTTGT
TCCTGACACTTAACGCGCCACTTTAAGTCGTTAAAGCCCACCATGGGCAC
TGGTATATATAAAGTTGGATCTGGATTGTCGGAATTGGCCTGACGCCACA
TGCGCGGATCCACGCCGCGGGGTGGATTTTCAAGGTACTCCCTCAATTGA
TCTTCGTCGGGTAATACCAGAGCCAAAGCCTCCACAACACCTAGATTATT
GAGCTGTGGTTTCAGCGTCGCCTGATTAAGGTAGTTTGAGAGTTCGGTGG
CAAGTATACGCTTGCTTTCGTTGGGAGCATGTTGAAGTTTCTCCTCGACA
TAAATAACAATTTGGCACTTTTTGTTCTCCAACTCCTTGATGGAATCTAT
GTGAACAAACATGTTGGGCTTGCTG
BS06847.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8831-PA | 1833 | CG8831-RA | 975..1833 | 875..17 | 4270 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:52:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup54-RA | 2048 | CG8831-RA | 1138..1996 | 875..17 | 4280 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:52:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12428910..12429426 | 359..875 | 2570 | 99.8 | Plus |
| 2R | 25286936 | 2R | 12428501..12428843 | 17..359 | 1715 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:52:53 has no hits.
BS06847.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:56 Download gff for
BS06847.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8831-PA | 975..1833 | 17..875 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:37:28 Download gff for
BS06847.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8831-PA | 975..1833 | 17..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:46:19 Download gff for
BS06847.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup54-RA | 1138..1999 | 14..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:38 Download gff for
BS06847.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup54-RA | 1138..1999 | 14..875 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:38 Download gff for
BS06847.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12428498..12428842 | 14..358 | 99 | <- | Plus |
| 2R | 12428910..12429426 | 359..875 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:46:19 Download gff for
BS06847.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8316003..8316347 | 14..358 | 99 | <- | Plus |
| arm_2R | 8316415..8316931 | 359..875 | 99 | | Plus |
BS06847.5prime Sequence
856 bp (801 high quality bases) assembled on 2005-12-04
> BS06847.5prime
GAAGTTATCAGTCGACATGTCGTTCTTCGGATCCAACACGTCGCTGGGAG
CAACAAGCACGCCGGCCAAAACAACCGGTGGCCTCTTCGGATCGCCGTTT
GGAGGCACAGCTGCAACCAGCCAGCCAGCACCCGCTTTCGGAGCACAGGC
CACATCGACTCCGGCTTTTGGCGCCCAACCGGCGACTTCTGCCTTCGGAG
CAGGTTCCGCCTTTGGAGCAACCGCTGCAGCCCCGGCTTTTGGAGCCGCC
ACAGGAACTTCTGCCTTTGGCGGCTCCGCCTTTGGCAGTACTCCGGCATT
TGGTGCGGCGACAACCACAACTGCGGGCACGGGTTTGGGAGGAGGCGGTT
TCGGCGGATTTGGAGCAGCTCCGGCAACAAGTCAGGCCGGTCTGTTCGGC
GCTCCAGCGACTAGTGCAGCACCACCAGCTTTTAGCGGATTCGGCCAACA
GGCAGCTGCGAGTACAGCGCCAGCAAGTGGATTTTCAGGCTTTGGCACAA
CCACAACGTCGGCACCTGCTTTTGGTGGCTTTGGCACCAGCCAGTCCACT
GGCTTTGGGGGCGGAGCCTTCGGATCCACGTTCGGAAAACCAGCGAATAC
AACAGTTACGCCGGGATTTGGTGGATTCGGAGGCACCAGTTTTATGCTTG
GACAGCCGCAACAGCAGCCAGCGCCCATATCGGCTGACGAGGCGTTTGCC
CAATCCATTCTGAATGTATCCATTTTCGGGGATGAACGGGACAAAATAGT
GGCCAAATGGAACTACTTGCAGGCTACGTGGGGCACTGGGAAAATGTTTT
ACTCCCAGAGTGCGGCACCGGTAGACATTACGCCGGAGAACGTGATGTGC
CGGTTC
BS06847.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8831-PA | 1833 | CG8831-RA | 1..840 | 17..856 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:05:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup54-RA | 2048 | CG8831-RA | 163..1003 | 16..856 | 4205 | 100 | Plus |
| CG43204-RA | 641 | CG43204-RA | 227..282 | 71..16 | 280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:05:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12429954..12430460 | 578..72 | 2535 | 100 | Minus |
| 2R | 25286936 | 2R | 12429617..12429894 | 856..579 | 1390 | 100 | Minus |
| 2R | 25286936 | 2R | 12430882..12430937 | 71..16 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 11:05:20 has no hits.
BS06847.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:53:57 Download gff for
BS06847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8831-PA | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:37:29 Download gff for
BS06847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8831-PA | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:35:55 Download gff for
BS06847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup54-RA | 163..1003 | 16..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:44:27 Download gff for
BS06847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup54-RA | 163..1003 | 16..856 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:44:27 Download gff for
BS06847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12429617..12429894 | 579..856 | 100 | <- | Minus |
| 2R | 12429954..12430460 | 72..578 | 100 | <- | Minus |
| 2R | 12430882..12430937 | 16..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:35:55 Download gff for
BS06847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8317122..8317399 | 579..856 | 100 | <- | Minus |
| arm_2R | 8317459..8317965 | 72..578 | 100 | <- | Minus |
| arm_2R | 8318387..8318442 | 16..71 | 100 | | Minus |
BS06847.complete Sequence
1865 bp assembled on 2008-01-02
GenBank Submission: FJ635643
> BS06847.complete
GAAGTTATCAGTCGACATGTCGTTCTTCGGATCCAACACGTCGCTGGGAG
CAACAAGCACGCCGGCCAAAACAACCGGTGGCCTCTTCGGATCGCCGTTT
GGAGGCACAGCTGCAACCAGCCAGCCAGCACCCGCTTTCGGAGCACAGGC
CACATCGACTCCGGCTTTTGGCGCCCAACCGGCGACTTCTGCCTTCGGAG
CAGGTTCCGCCTTTGGAGCAACCGCTGCAGCCCCGGCTTTTGGAGCCGCC
ACAGGAACTTCTGCCTTTGGCGGCTCCGCCTTTGGCAGTACTCCGGCATT
TGGTGCGGCGACAACCACAACTGCGGGCACGGGTTTGGGAGGAGGCGGTT
TCGGCGGATTTGGAGCAGCTCCGGCAACAAGTCAGGCCGGTCTGTTCGGC
GCTCCAGCGACTAGTGCAGCACCACCAGCTTTTAGCGGATTCGGCCAACA
GGCAGCTGCGAGTACAGCGCCAGCAAGTGGATTTTCAGGCTTTGGCACAA
CCACAACGTCGGCACCTGCTTTTGGTGGCTTTGGCACCAGCCAGTCCACT
GGCTTTGGGGGCGGAGCCTTCGGATCCACGTTCGGAAAACCAGCGAATAC
AACAGTTACGCCGGGATTTGGTGGATTCGGAGGCACCAGTTTTATGCTTG
GACAGCCGCAACAGCAGCCAGCGCCCATATCGGCTGACGAGGCGTTTGCC
CAATCCATTCTGAATGTATCCATTTTCGGGGATGAACGGGACAAAATAGT
GGCCAAATGGAACTACTTGCAGGCTACGTGGGGCACTGGGAAAATGTTTT
ACTCCCAGAGTGCGGCACCGGTAGACATTACGCCGGAGAACGTGATGTGC
CGGTTCAAGGCCATAGGCTACAGTCGTATGCCGGGCAAGGATAACAAGTT
GGGACTGGTGGCTCTTAACTTCTGCAGAGAACTCTCAGCTGTCAAGCCAC
ACCAGCAACAAGTGATTCAAACGCTTCACAGTTTATTCGGCAGCAAGCCC
AACATGCTTGTTCACATAGATTCCATCAAGGAGTTGGAGAACAAAAAGTG
CCAAATTGTTATTTATGTCGAGGAGAAACTTCAACATGCTCCCAACGAAA
GCAAGCGTATACTTGCCACCGAACTCTCAAACTACCTTAATCAGGCGACG
CTGAAACCACAGCTCAATAATCTAGGTGTTGTGGAGGCTTTGGCTCTGGT
ATTACCCGACGAAGATCAATTGAGGGAGTACCTTGAAAATCCACCCCGCG
GCGTGGATCCGCGCATGTGGCGTCAGGCCAATTCCGACAATCCAGATCCA
ACTTTATATATACCAGTGCCCATGGTGGGCTTTAACGACTTAAAGTGGCG
CGTTAAGTGTCAGGAACAAGAAACGGACACGCATGCATTGTACATAAAGA
AGGTGGAGAGTGAGCTGACAGAACTCAAGAAGCGCCATGCCACTGCCACA
GCGAAGATACTTGAACATAAACGGAAACTGGCCGAGCTCAGTCATCGCAT
ACTAAGGATAATAGTGAAACAAGAGTGCACCCGCAAGGTGGGCACTTCCC
TGACGCCCGAGGAGGAGGCCTTGCGCACCAAGCTACAGAACATGCTGGCT
GTCGTCTCCGCACCCACCCAATTCAAGGGCCGACTCAGCGAGCTCCTCTC
CCAGATGCGCATGCAGCGCAATCAATTCGCAGCCAACGGTGGTGCCGAGT
ATGCCCTCGACAAGGAAGCGGAGGACGAGATGAAGACCTTTCTGACGATG
CAGCAGCGCGCCATGGAGGTGCTGAGCGATACCGTCAACAAGGACCTGAG
GGCGCTGGATGTTATAATTAAAGGACTGCCCGAGCTGCGACAATCGTGAA
AGCTTTCTAGACCAT
BS06847.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:05:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup54-RA | 1833 | CG8831-PA | 1..1833 | 17..1849 | 9165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup54-RA | 2048 | CG8831-RA | 163..1996 | 16..1849 | 9170 | 100 | Plus |
| CG43204-RA | 641 | CG43204-RA | 227..282 | 71..16 | 280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12428910..12429471 | 1507..946 | 2810 | 100 | Minus |
| 2R | 25286936 | 2R | 12429954..12430460 | 578..72 | 2535 | 100 | Minus |
| 2R | 25286936 | 2R | 12429527..12429894 | 946..579 | 1840 | 100 | Minus |
| 2R | 25286936 | 2R | 12428501..12428843 | 1849..1507 | 1715 | 100 | Minus |
| 2R | 25286936 | 2R | 12430882..12430937 | 71..16 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:05:46 has no hits.
BS06847.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:06:19 Download gff for
BS06847.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8831-RA | 1..1833 | 17..1849 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:28 Download gff for
BS06847.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8831-RA | 160..1991 | 17..1848 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:03 Download gff for
BS06847.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup54-RA | 164..1995 | 17..1848 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:06:19 Download gff for
BS06847.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8831-RA | 159..1995 | 16..1852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:24 Download gff for
BS06847.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup54-RA | 164..1995 | 17..1848 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:24 Download gff for
BS06847.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12428502..12428842 | 1508..1848 | 100 | <- | Minus |
| 2R | 12428910..12429471 | 946..1507 | 100 | <- | Minus |
| 2R | 12429528..12429894 | 579..945 | 100 | <- | Minus |
| 2R | 12429954..12430460 | 72..578 | 100 | <- | Minus |
| 2R | 12430882..12430936 | 17..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:03 Download gff for
BS06847.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8316007..8316347 | 1508..1848 | 100 | <- | Minus |
| arm_2R | 8316415..8316976 | 946..1507 | 100 | <- | Minus |
| arm_2R | 8317033..8317399 | 579..945 | 100 | <- | Minus |
| arm_2R | 8317459..8317965 | 72..578 | 100 | <- | Minus |
| arm_2R | 8318387..8318441 | 17..71 | 100 | | Minus |
BS06847.pep Sequence
Translation from 16 to 1848
> BS06847.pep
MSFFGSNTSLGATSTPAKTTGGLFGSPFGGTAATSQPAPAFGAQATSTPA
FGAQPATSAFGAGSAFGATAAAPAFGAATGTSAFGGSAFGSTPAFGAATT
TTAGTGLGGGGFGGFGAAPATSQAGLFGAPATSAAPPAFSGFGQQAAAST
APASGFSGFGTTTTSAPAFGGFGTSQSTGFGGGAFGSTFGKPANTTVTPG
FGGFGGTSFMLGQPQQQPAPISADEAFAQSILNVSIFGDERDKIVAKWNY
LQATWGTGKMFYSQSAAPVDITPENVMCRFKAIGYSRMPGKDNKLGLVAL
NFCRELSAVKPHQQQVIQTLHSLFGSKPNMLVHIDSIKELENKKCQIVIY
VEEKLQHAPNESKRILATELSNYLNQATLKPQLNNLGVVEALALVLPDED
QLREYLENPPRGVDPRMWRQANSDNPDPTLYIPVPMVGFNDLKWRVKCQE
QETDTHALYIKKVESELTELKKRHATATAKILEHKRKLAELSHRILRIIV
KQECTRKVGTSLTPEEEALRTKLQNMLAVVSAPTQFKGRLSELLSQMRMQ
RNQFAANGGAEYALDKEAEDEMKTFLTMQQRAMEVLSDTVNKDLRALDVI
IKGLPELRQS*
BS06847.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:37:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup54-PA | 610 | CG8831-PA | 1..610 | 1..610 | 3134 | 100 | Plus |
| Nup58-PA | 546 | CG7360-PA | 64..298 | 4..215 | 263 | 41.2 | Plus |
| Nup98-96-PC | 1179 | CG10198-PC | 309..500 | 4..208 | 241 | 40.2 | Plus |
| Nup98-96-PD | 1960 | CG10198-PD | 309..500 | 4..208 | 241 | 40.2 | Plus |
| Nup98-96-PA | 1960 | CG10198-PA | 309..500 | 4..208 | 241 | 40.2 | Plus |
| Nup98-96-PC | 1179 | CG10198-PC | 2..206 | 3..214 | 233 | 38 | Plus |
| Nup98-96-PD | 1960 | CG10198-PD | 2..206 | 3..214 | 233 | 38 | Plus |
| Nup98-96-PC | 1179 | CG10198-PC | 363..593 | 2..218 | 231 | 35.2 | Plus |
| Nup98-96-PD | 1960 | CG10198-PD | 363..593 | 2..218 | 231 | 35.2 | Plus |
| Nup98-96-PC | 1179 | CG10198-PC | 4..186 | 61..215 | 202 | 38.8 | Plus |
| Nup98-96-PD | 1960 | CG10198-PD | 4..186 | 61..215 | 202 | 38.8 | Plus |
| Nup58-PA | 546 | CG7360-PA | 5..203 | 34..208 | 191 | 36.9 | Plus |
