Clone Sequence Records
BS06849.3prime Sequence
935 bp (759 high quality bases) assembled on 2005-12-04
> BS06849.3prime
ATGGTCTAGAAAGCTTCTAATCCTCAAAGGTGATGCGGCCGGGTCCGTGG
TTCTTCATGTATCGCCTGTACGCCTTGTATCGTGGATTCTCCGCCAGCTT
CTTTTTCATCTCCTCTTCCTGTTCTGCCTTCCAGGCGACGAAGTTCTCGC
GCTTCCACAGCTTCAGATGCAGGTACTCCTCGATCAGCTTGTCCTCCTGC
GCCTCGAACTGATGCTGGCCCATGCCCAGGTGCCGGCGGATGAGGTAGAG
CTTCTGCTCGCGGCCATACGGCTGCTTCATTACCGTGTAGCGCCAGAACC
ACTGAGCGTGCCACACGATGAACGAGAGTATCGTGTAGGGGCAGATGATC
AGCTGCACCCACAGCACATCCCAGAGTGTCGGCTTCGCATAGCCGCCCTT
AACGTCCATCTTCTCCTCGATCACCCGCCGGATGATCCGTTCCAGCTCAT
CGCGCTGATCGTTCTTGGACATACGATTCTTGCCCTTCTTCTGGATCTTT
TCCTGGATCTCGTCGCGAGCTATTTCCAGGGCCTGGTTCCTATACTTGGG
CACCGTGGCAAAGTACTTGATGGCAGAATCGTAGCGCTGCCAGCCGGAAT
AGTACTGGATGACGGACACAATGGTTAGGACGACCACGATAACCACGCGC
ACATCCACCTTGGGCGCCACGCGTCGCCGGTAGTAGCGATAGTAATGCGC
ATAGTATGCATCCGGGTTGTCCAGCATGTAATCGTAGTCCGTGCGCGACT
CCTCATCGCGCAGGATCTCGTAGGCGGTGGCCACCAGCTTAAACTGCGTC
TCCGCCGCCGCCTTGGCCTCGGCACCCCGATGCAGATCTGGATGATAGCG
CCTCGCCAGCTGGCGGTATGCTTTGCCGATCTCCGACTTGGACGACTCTC
TGGTGACGCCCAGCACGTCGTAACAGTTTTCCTTG
BS06849.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7872-PA | 1002 | CG7872-RA | 84..1002 | 935..17 | 4595 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:43:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7872-RA | 1653 | CG7872-RA | 313..1231 | 935..17 | 4595 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:42:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15578517..15579435 | 935..17 | 4595 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 21:43:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 4127..4188 | 212..152 | 127 | 69.4 | Minus |
BS06849.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:00 Download gff for
BS06849.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7872-PA | 84..1002 | 17..935 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:37:33 Download gff for
BS06849.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7872-PA | 84..1002 | 17..935 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:41:10 Download gff for
BS06849.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7872-RA | 313..1239 | 8..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:22 Download gff for
BS06849.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7872-RA | 313..1239 | 8..935 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:22 Download gff for
BS06849.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15578517..15579443 | 8..935 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:41:10 Download gff for
BS06849.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15472550..15473476 | 8..935 | 99 | | Minus |
BS06849.5prime Sequence
897 bp (835 high quality bases) assembled on 2005-12-04
> BS06849.5prime
GAAGTTATCAGTCGACATGCGGACGCACGGACTACGGTTGGTGCTCTTGG
CCCTGCTGCCCACGATGGCCCTGGGCCTGCTAGAGGGCCTGTACTGTGGC
AAGGAAAACTGTTACGACGTGCTGGGCGTCACCAGAGAGTCGTCCAAGTC
GGAGATCGGCAAAGCATACCGCCAGCTGGCGAGGCGCTATCATCCAGATC
TGCATCGGGGTGCCGAGGCCAAGGCGGCGGCGGAGACGCAGTTTAAGCTG
GTGGCCACCGCCTACGAGATCCTGCGCGATGAGGAGTCGCGCACGGACTA
CGATTACATGCTGGACAACCCGGATGCATACTATGCGCATTACTATCGCT
ACTACCGGCGACGCGTGGCGCCCAAGGTGGATGTGCGCGTGGTTATCGTG
GTCGTCCTAACCATTGTGTCCGTCATCCAGTACTATTCCGGCTGGCAGCG
CTACGATTCTGCCATCAAGTACTTTGCCACGGTGCCCAAGTATAGGAACC
AGGCCCTGGAAATAGCTCGCGACGAGATCCAGGAAAAGATCCAGAAGAAG
GGCAAGAATCGTATGTCCAAGAACGATCAGCGCGATGAGCTGGAACGGAT
CATCCGGCGGGTGATCGAGGAGAAGATGGACGTTAAGGGCGGCTATGCGA
AGCCGACACTCTGGGATGTGCTGTGGGTGCAGCTGATCATCTGCCCCTAC
ACGATACTCTCGTTCATCGTGTGGCACGCTCAGTGGTTCTGGCGCTACAC
GGTAATGAAGCAGCCGTATGGCCGCGAGCAGAAGCTCTACCTCATCCGCC
GGCACCTGGGCATGGGCCAGCATCAGTTCGAGGCGCANGAAGACAAGCTG
ATCGAGGAGTACCTGCATCTGAAGCTGTGGAAGCGCGAGAACTTCGT
BS06849.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7872-PA | 1002 | CG7872-RA | 1..881 | 17..897 | 4361 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:37:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7872-RA | 1653 | CG7872-RA | 230..1110 | 17..897 | 4379 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:37:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15578434..15579314 | 17..897 | 4379 | 99.8 | Plus |
Blast to na_te.dros performed 2015-02-11 18:37:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 4127..4188 | 823..883 | 129 | 69.4 | Plus |
BS06849.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:01 Download gff for
BS06849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7872-PA | 1..881 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:37:35 Download gff for
BS06849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7872-PA | 1..881 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:31:08 Download gff for
BS06849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7872-RA | 230..1110 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:08:32 Download gff for
BS06849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7872-RA | 230..1110 | 17..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:08:32 Download gff for
BS06849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15578434..15579314 | 17..897 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:31:08 Download gff for
BS06849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15472467..15473347 | 17..897 | 99 | | Plus |
BS06849.complete Sequence
1034 bp (1034 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635644
> BS06849.complete
GAAGTTATCAGTCGACATGCGGACGCACGGACTACGGTTGGTGCTCTTGG
CCCTGCTGCCCACGATGGCCCTGGGCCTGCTAGAGGGCCTGTACTGTGGC
AAGGAAAACTGTTACGACGTGCTGGGCGTCACCAGAGAGTCGTCCAAGTC
GGAGATCGGCAAAGCATACCGCCAGCTGGCGAGGCGCTATCATCCAGATC
TGCATCGGGGTGCCGAGGCCAAGGCGGCGGCGGAGACGCAGTTTAAGCTG
GTGGCCACCGCCTACGAGATCCTGCGCGATGAGGAGTCGCGCACGGACTA
CGATTACATGCTGGACAACCCGGATGCATACTATGCGCATTACTATCGCT
ACTACCGGCGACGCGTGGCGCCCAAGGTGGATGTGCGCGTGGTTATCGTG
GTCGTCCTAACCATTGTGTCCGTCATCCAGTACTATTCCGGCTGGCAGCG
CTACGATTCTGCCATCAAGTACTTTGCCACGGTGCCCAAGTATAGGAACC
AGGCCCTGGAAATAGCTCGCGACGAGATCCAGGAAAAGATCCAGAAGAAG
GGCAAGAATCGTATGTCCAAGAACGATCAGCGCGATGAGCTGGAACGGAT
CATCCGGCGGGTGATCGAGGAGAAGATGGACGTTAAGGGCGGCTATGCGA
AGCCGACACTCTGGGATGTGCTGTGGGTGCAGCTGATCATCTGCCCCTAC
ACGATACTCTCGTTCATCGTGTGGCACGCTCAGTGGTTCTGGCGCTACAC
GGTAATGAAGCAGCCGTATGGCCGCGAGCAGAAGCTCTACCTCATCCGCC
GGCACCTGGGCATGGGCCAGCATCAGTTCGAGGCGCAGGAGGACAAGCTG
ATCGAGGAGTACCTGCATCTGAAGCTGTGGAAGCGCGAGAACTTCGTCGC
CTGGAAGGCAGAACAGGAAGAGGAGATGAAAAAGAAGCTGGCGGAGAATC
CACGATACAAGGCGTACAGGCGATACATGAAGAACCACGGACCCGGCCGC
ATCACCTTTGAGGATTAGAAGCTTTCTAGACCAT
BS06849.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:58:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7872-RA | 1002 | CG7872-PA | 1..1002 | 17..1018 | 5010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:58:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7872-RA | 1653 | CG7872-RA | 230..1231 | 17..1018 | 5010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:58:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15578434..15579435 | 17..1018 | 5010 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:58:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 4127..4188 | 823..883 | 127 | 69.4 | Plus |
BS06849.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:11 Download gff for
BS06849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7872-RA | 1..1002 | 17..1018 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:53 Download gff for
BS06849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7872-RA | 345..1354 | 17..1027 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:37:03 Download gff for
BS06849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7872-RA | 230..1231 | 17..1018 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:12 Download gff for
BS06849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7872-RA | 345..1354 | 17..1027 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:01 Download gff for
BS06849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7872-RA | 230..1231 | 17..1018 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:01 Download gff for
BS06849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15578434..15579435 | 17..1018 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:37:03 Download gff for
BS06849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15472467..15473468 | 17..1018 | 100 | | Plus |
BS06849.pep Sequence
Translation from 16 to 1017
> BS06849.pep
MRTHGLRLVLLALLPTMALGLLEGLYCGKENCYDVLGVTRESSKSEIGKA
YRQLARRYHPDLHRGAEAKAAAETQFKLVATAYEILRDEESRTDYDYMLD
NPDAYYAHYYRYYRRRVAPKVDVRVVIVVVLTIVSVIQYYSGWQRYDSAI
KYFATVPKYRNQALEIARDEIQEKIQKKGKNRMSKNDQRDELERIIRRVI
EEKMDVKGGYAKPTLWDVLWVQLIICPYTILSFIVWHAQWFWRYTVMKQP
YGREQKLYLIRRHLGMGQHQFEAQEDKLIEEYLHLKLWKRENFVAWKAEQ
EEEMKKKLAENPRYKAYRRYMKNHGPGRITFED*
BS06849.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7872-PA | 333 | CG7872-PA | 1..333 | 1..333 | 1767 | 100 | Plus |
