Clone Sequence Records
BS06851.3prime Sequence
916 bp (797 high quality bases) assembled on 2005-12-04
> BS06851.3prime
ATGGTCTAGAAAGCTTTTACTGCTTCTTGGGAACTTCAGTGTCGTTTTGC
CTCTTCTTGCGATTCTCCAATATACTTGTGATGAAGAACTCGCCGGCTTT
GTAGGAGCTGCGCACCAGCGGTCCACTGGCTGTGTACAGGAAACCCAGTT
CGTTGCCGCGCTCTTCCCAGTGCTTGAACTTCTCGGGCGTGACGTATTCG
ATGACCTTGAGGTGCTTATTCGTGGGCTGCATGTACTGACCCAGGGTCAC
GCAATCTACGCCGGCCTCCCGCAGATCCTTCAAGGTGTTCTCGATCTCCT
CGTCGGTCTCGCCAAGTCCCAGCATAATTGAACTCTTGGTGATGAGATTG
GGGTTGAATCTCTTCGCTTCGGTTAGCACTTGCAGGGTCTGGCGGTAGTG
GGCGCGCCGGTCGCGCACATAGGGAGTGAGCTTCTCAACCGTCTCTATGT
TGTGCGCATAAACATCCAGCCCGCTGTTGGCGATCGTCTTCACACACTCC
AGATTTCCTCGGAAATCAGGTACTAGGCACTCCACAAAGATGTTTGAGTT
GCGCGCCTTAATTTCGCGAACAGTTTCGGCAATGTGCTCCGAGCCACCGT
CTGGCAAATCATCTCGATCAACTGAGGTCAGAACAATGTAATCCAATCCC
CAGGAGGCAATTGCCGTGGCTGTGTTCACGGGTTCGTTTACATCCAGCGG
TGGTGGTTTGCGTGCCGTTTTCACCGAACAAAATCTACAGCCTCTGGTGC
AAGTGTCGCCCATAAGCATAATCGTGGCTGTCTGGGTGCCATGCTCGCCG
CCGCCCCAGCACTCGCCGATGTTGGGACACCGGGCCTCCTCGCAGACGGT
GGACAGCTTGAGCTCGCGCATCTGGGCCTTGATTTTGGCGTAGTTTTTGC
CACGGGGATGGTGGTC
BS06851.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5231-PA | 1143 | Las-RA | 259..1143 | 901..17 | 4425 | 100 | Minus |
CG5231-PB | 573 | Las-RB | 259..550 | 901..610 | 1460 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:05:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Las-RC | 1373 | CG5231-RC | 335..1237 | 916..15 | 4475 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:05:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20430741..20431278 | 15..552 | 2690 | 100 | Plus |
3L | 28110227 | 3L | 20431448..20431605 | 610..767 | 790 | 100 | Plus |
3L | 28110227 | 3L | 20431818..20431968 | 767..916 | 690 | 98.7 | Plus |
3L | 28110227 | 3L | 20431333..20431391 | 552..610 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 01:05:11 has no hits.
BS06851.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:05 Download gff for
BS06851.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Las-PA | 243..1143 | 17..916 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:37:39 Download gff for
BS06851.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5231-PA | 243..1143 | 17..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:51:17 Download gff for
BS06851.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Las-RC | 335..1248 | 1..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:06:16 Download gff for
BS06851.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Las-RC | 335..1248 | 1..916 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:06:16 Download gff for
BS06851.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20430729..20431277 | 1..551 | 99 | <- | Plus |
3L | 20431333..20431390 | 552..609 | 100 | <- | Plus |
3L | 20431448..20431604 | 610..766 | 100 | <- | Plus |
3L | 20431818..20431968 | 767..916 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:51:17 Download gff for
BS06851.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20423829..20424377 | 1..551 | 99 | <- | Plus |
arm_3L | 20424433..20424490 | 552..609 | 100 | <- | Plus |
arm_3L | 20424548..20424704 | 610..766 | 100 | <- | Plus |
arm_3L | 20424918..20425068 | 767..916 | 98 | | Plus |
BS06851.5prime Sequence
887 bp (811 high quality bases) assembled on 2005-12-04
> BS06851.5prime
GAAGTTATCAGTCGACATGTATGTCATGTTGCGAGCTTTAAAAACTCACG
CGGAGGCCCCCATTGTAGTTGCCACCCGTGCGGCATCAACGAATGCGGAG
AAGCTTGAGGAGATTCGTGAACGTCTGGCAAAGGGTCCGAATTTCCATGA
CTTTGTGCAGAATCCGGACAACACCAGAAACGAGTGGGAACAGTACGATG
GAAAGCTACGCCGCGAAAAGGGCGAGGAGCAGCGACTGCGATTGCCGCCT
TGGTTAAAGACCACCATTCCCGTGGGCAAAAACTACGCCAAAATCAAGGC
CCAGATGCGCGAGCTCAAGCTGTCCACCGTCTGCGAGGAGGCCCGGTGTC
CCAACATCGGCGAGTGCTGGGGCGGCGGCGAGCATGGCACCCAGACAGCC
ACGATTATGCTTATGGGCGACACTTGCACCAGAGGCTGTAGATTTTGTTC
GGTGAAAACGGCACGCAAACCACCACCGCTGGATGTAAACGAACCCGTGA
ACACAGCCACGGCAATTGCCTCCTGGGGATTGGATTACATTGTTCTGACC
TCAGTTGATCGAGATGATTTGCCAGACGGTGGCTCGGAGCACATTGCCGA
AACTGTTCGCGAAATTAAGGCGCGCAACTCAAACATCTTTGTGGAGTGCC
TAGTACCTGATTTCCGAGGAAATCTGGAGTGTGTGAAGACGATCGCCAAC
AGCGGGCTGGATGTTTATGCGCACAACATAGAGACGGTTGAGAAGCTCAC
TCCCTATGTGCGCGACCGGCGCGCCCACTACCGCCAGACCCTGCAAGTGC
TAACCGAAGCGAAGAGATTCAACCCCAATCTCATCACCAAGAGTTCAATT
ATGCTGGGACTTGGCGAGACCGACGAGGAGATCGAGA
BS06851.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5231-PA | 1143 | Las-RA | 1..871 | 17..887 | 4355 | 100 | Plus |
CG5231-PB | 573 | Las-RB | 1..550 | 17..566 | 2750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:19:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Las-RC | 1373 | CG5231-RC | 93..963 | 17..887 | 4355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:18:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20431818..20432150 | 409..77 | 1665 | 100 | Minus |
3L | 28110227 | 3L | 20431015..20431278 | 887..624 | 1320 | 100 | Minus |
3L | 28110227 | 3L | 20431448..20431605 | 566..409 | 790 | 100 | Minus |
3L | 28110227 | 3L | 20432210..20432269 | 76..17 | 300 | 100 | Minus |
3L | 28110227 | 3L | 20431333..20431391 | 624..566 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:19:03 has no hits.
BS06851.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:06 Download gff for
BS06851.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Las-PA | 1..870 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:37:41 Download gff for
BS06851.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5231-PA | 1..870 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:14:05 Download gff for
BS06851.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Las-RC | 84..962 | 7..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:41:37 Download gff for
BS06851.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Las-RC | 84..962 | 7..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:41:37 Download gff for
BS06851.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20431016..20431277 | 625..886 | 100 | <- | Minus |
3L | 20431333..20431390 | 567..624 | 100 | <- | Minus |
3L | 20431448..20431604 | 410..566 | 100 | <- | Minus |
3L | 20431818..20432150 | 77..409 | 100 | <- | Minus |
3L | 20432210..20432278 | 7..76 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:14:05 Download gff for
BS06851.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20424116..20424377 | 625..886 | 100 | <- | Minus |
arm_3L | 20424433..20424490 | 567..624 | 100 | <- | Minus |
arm_3L | 20424548..20424704 | 410..566 | 100 | <- | Minus |
arm_3L | 20424918..20425250 | 77..409 | 100 | <- | Minus |
arm_3L | 20425310..20425378 | 7..76 | 94 | | Minus |
BS06851.complete Sequence
1175 bp (1175 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635645
> BS06851.complete
GAAGTTATCAGTCGACATGTATGTCATGTTGCGAGCTTTAAAAACTCACG
CGGAGGCCCCCATTGTAGTTGCCACCCGTGCGGCATCAACGAATGCGGAG
AAGCTTGAGGAGATTCGTGAACGTCTGGCAAAGGGTCCGAATTTCCATGA
CTTTGTGCAGAATCCGGACAACACCAGAAACGAGTGGGAACAGTACGATG
GAAAGCTACGCCGCGAAAAGGGCGAGGAGCAGCGACTGCGATTGCCGCCT
TGGTTAAAGACCACCATTCCCGTGGGCAAAAACTACGCCAAAATCAAGGC
CCAGATGCGCGAGCTCAAGCTGTCCACCGTCTGCGAGGAGGCCCGGTGTC
CCAACATCGGCGAGTGCTGGGGCGGCGGCGAGCATGGCACCCAGACAGCC
ACGATTATGCTTATGGGCGACACTTGCACCAGAGGCTGTAGATTTTGTTC
GGTGAAAACGGCACGCAAACCACCACCGCTGGATGTAAACGAACCCGTGA
ACACAGCCACGGCAATTGCCTCCTGGGGATTGGATTACATTGTTCTGACC
TCAGTTGATCGAGATGATTTGCCAGACGGTGGCTCGGAGCACATTGCCGA
AACTGTTCGCGAAATTAAGGCGCGCAACTCAAACATCTTTGTGGAGTGCC
TAGTACCTGATTTCCGAGGAAATCTGGAGTGTGTGAAGACGATCGCCAAC
AGCGGGCTGGATGTTTATGCGCACAACATAGAGACGGTTGAGAAGCTCAC
TCCCTATGTGCGCGACCGGCGCGCCCACTACCGCCAGACCCTGCAAGTGC
TAACCGAAGCGAAGAGATTCAACCCCAATCTCATCACCAAGAGTTCAATT
ATGCTGGGACTTGGCGAGACCGACGAGGAGATCGAGAACACCTTGAAGGA
TCTGCGGGAGGCCGGCGTAGATTGCGTGACCCTGGGTCAGTACATGCAGC
CCACGAATAAGCACCTCAAGGTCATCGAATACGTCACGCCCGAGAAGTTC
AAGCACTGGGAAGAGCGCGGCAACGAACTGGGTTTCCTGTACACAGCCAG
TGGACCGCTGGTGCGCAGCTCCTACAAAGCCGGCGAGTTCTTCATCACAA
GTATATTGGAGAATCGCAAGAAGAGGCAAAACGACACTGAAGTTCCCAAG
AAGCAGTAAAAGCTTTCTAGACCAT
BS06851.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:50:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Las-RC | 1134 | CG5231-PC | 1..1134 | 26..1159 | 5670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:50:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Las-RC | 1373 | CG5231-RC | 93..1237 | 17..1161 | 5725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:50:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20430741..20431278 | 1161..624 | 2690 | 100 | Minus |
3L | 28110227 | 3L | 20431818..20432150 | 409..77 | 1665 | 100 | Minus |
3L | 28110227 | 3L | 20431448..20431605 | 566..409 | 790 | 100 | Minus |
3L | 28110227 | 3L | 20432210..20432269 | 76..17 | 300 | 100 | Minus |
3L | 28110227 | 3L | 20431333..20431391 | 624..566 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:50:24 has no hits.
BS06851.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:12 Download gff for
BS06851.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Las-RC | 1..1134 | 26..1159 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:55 Download gff for
BS06851.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Las-RC | 79..1243 | 7..1175 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:02 Download gff for
BS06851.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Las-RC | 93..1233 | 17..1157 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:13 Download gff for
BS06851.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Las-RC | 79..1243 | 7..1175 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:19 Download gff for
BS06851.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Las-RC | 93..1233 | 17..1157 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:19 Download gff for
BS06851.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20431818..20432150 | 77..409 | 100 | <- | Minus |
3L | 20432210..20432269 | 17..76 | 100 | | Minus |
3L | 20430745..20431277 | 625..1157 | 100 | <- | Minus |
3L | 20431333..20431390 | 567..624 | 100 | <- | Minus |
3L | 20431448..20431604 | 410..566 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:02 Download gff for
BS06851.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20423845..20424377 | 625..1157 | 100 | <- | Minus |
arm_3L | 20424433..20424490 | 567..624 | 100 | <- | Minus |
arm_3L | 20424548..20424704 | 410..566 | 100 | <- | Minus |
arm_3L | 20424918..20425250 | 77..409 | 100 | <- | Minus |
arm_3L | 20425310..20425369 | 17..76 | 100 | | Minus |
BS06851.pep Sequence
Translation from 16 to 1158
> BS06851.pep
MYVMLRALKTHAEAPIVVATRAASTNAEKLEEIRERLAKGPNFHDFVQNP
DNTRNEWEQYDGKLRREKGEEQRLRLPPWLKTTIPVGKNYAKIKAQMREL
KLSTVCEEARCPNIGECWGGGEHGTQTATIMLMGDTCTRGCRFCSVKTAR
KPPPLDVNEPVNTATAIASWGLDYIVLTSVDRDDLPDGGSEHIAETVREI
KARNSNIFVECLVPDFRGNLECVKTIANSGLDVYAHNIETVEKLTPYVRD
RRAHYRQTLQVLTEAKRFNPNLITKSSIMLGLGETDEEIENTLKDLREAG
VDCVTLGQYMQPTNKHLKVIEYVTPEKFKHWEERGNELGFLYTASGPLVR
SSYKAGEFFITSILENRKKRQNDTEVPKKQ*
BS06851.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Las-PC | 377 | CG5231-PC | 1..377 | 4..380 | 1991 | 100 | Plus |