Clone BS06851 Report

Search the DGRC for BS06851

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:68
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptLas-RC
Protein status:BS06851.pep: gold
Sequenced Size:16

Clone Sequence Records

BS06851.3prime Sequence

916 bp (797 high quality bases) assembled on 2005-12-04

> BS06851.3prime
ATGGTCTAGAAAGCTTTTACTGCTTCTTGGGAACTTCAGTGTCGTTTTGC
CTCTTCTTGCGATTCTCCAATATACTTGTGATGAAGAACTCGCCGGCTTT
GTAGGAGCTGCGCACCAGCGGTCCACTGGCTGTGTACAGGAAACCCAGTT
CGTTGCCGCGCTCTTCCCAGTGCTTGAACTTCTCGGGCGTGACGTATTCG
ATGACCTTGAGGTGCTTATTCGTGGGCTGCATGTACTGACCCAGGGTCAC
GCAATCTACGCCGGCCTCCCGCAGATCCTTCAAGGTGTTCTCGATCTCCT
CGTCGGTCTCGCCAAGTCCCAGCATAATTGAACTCTTGGTGATGAGATTG
GGGTTGAATCTCTTCGCTTCGGTTAGCACTTGCAGGGTCTGGCGGTAGTG
GGCGCGCCGGTCGCGCACATAGGGAGTGAGCTTCTCAACCGTCTCTATGT
TGTGCGCATAAACATCCAGCCCGCTGTTGGCGATCGTCTTCACACACTCC
AGATTTCCTCGGAAATCAGGTACTAGGCACTCCACAAAGATGTTTGAGTT
GCGCGCCTTAATTTCGCGAACAGTTTCGGCAATGTGCTCCGAGCCACCGT
CTGGCAAATCATCTCGATCAACTGAGGTCAGAACAATGTAATCCAATCCC
CAGGAGGCAATTGCCGTGGCTGTGTTCACGGGTTCGTTTACATCCAGCGG
TGGTGGTTTGCGTGCCGTTTTCACCGAACAAAATCTACAGCCTCTGGTGC
AAGTGTCGCCCATAAGCATAATCGTGGCTGTCTGGGTGCCATGCTCGCCG
CCGCCCCAGCACTCGCCGATGTTGGGACACCGGGCCTCCTCGCAGACGGT
GGACAGCTTGAGCTCGCGCATCTGGGCCTTGATTTTGGCGTAGTTTTTGC
CACGGGGATGGTGGTC

BS06851.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG5231-PA 1143 Las-RA 259..1143 901..17 4425 100 Minus
CG5231-PB 573 Las-RB 259..550 901..610 1460 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
Las-RC 1373 CG5231-RC 335..1237 916..15 4475 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20430741..20431278 15..552 2690 100 Plus
3L 28110227 3L 20431448..20431605 610..767 790 100 Plus
3L 28110227 3L 20431818..20431968 767..916 690 98.7 Plus
3L 28110227 3L 20431333..20431391 552..610 295 100 Plus
Blast to na_te.dros performed on 2015-02-09 01:05:11 has no hits.

BS06851.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:05 Download gff for BS06851.3prime
Subject Subject Range Query Range Percent Splice Strand
Las-PA 243..1143 17..916 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:37:39 Download gff for BS06851.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5231-PA 243..1143 17..916 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:51:17 Download gff for BS06851.3prime
Subject Subject Range Query Range Percent Splice Strand
Las-RC 335..1248 1..916 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:06:16 Download gff for BS06851.3prime
Subject Subject Range Query Range Percent Splice Strand
Las-RC 335..1248 1..916 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:06:16 Download gff for BS06851.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20430729..20431277 1..551 99 <- Plus
3L 20431333..20431390 552..609 100 <- Plus
3L 20431448..20431604 610..766 100 <- Plus
3L 20431818..20431968 767..916 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:51:17 Download gff for BS06851.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20423829..20424377 1..551 99 <- Plus
arm_3L 20424433..20424490 552..609 100 <- Plus
arm_3L 20424548..20424704 610..766 100 <- Plus
arm_3L 20424918..20425068 767..916 98   Plus

BS06851.5prime Sequence

887 bp (811 high quality bases) assembled on 2005-12-04

> BS06851.5prime
GAAGTTATCAGTCGACATGTATGTCATGTTGCGAGCTTTAAAAACTCACG
CGGAGGCCCCCATTGTAGTTGCCACCCGTGCGGCATCAACGAATGCGGAG
AAGCTTGAGGAGATTCGTGAACGTCTGGCAAAGGGTCCGAATTTCCATGA
CTTTGTGCAGAATCCGGACAACACCAGAAACGAGTGGGAACAGTACGATG
GAAAGCTACGCCGCGAAAAGGGCGAGGAGCAGCGACTGCGATTGCCGCCT
TGGTTAAAGACCACCATTCCCGTGGGCAAAAACTACGCCAAAATCAAGGC
CCAGATGCGCGAGCTCAAGCTGTCCACCGTCTGCGAGGAGGCCCGGTGTC
CCAACATCGGCGAGTGCTGGGGCGGCGGCGAGCATGGCACCCAGACAGCC
ACGATTATGCTTATGGGCGACACTTGCACCAGAGGCTGTAGATTTTGTTC
GGTGAAAACGGCACGCAAACCACCACCGCTGGATGTAAACGAACCCGTGA
ACACAGCCACGGCAATTGCCTCCTGGGGATTGGATTACATTGTTCTGACC
TCAGTTGATCGAGATGATTTGCCAGACGGTGGCTCGGAGCACATTGCCGA
AACTGTTCGCGAAATTAAGGCGCGCAACTCAAACATCTTTGTGGAGTGCC
TAGTACCTGATTTCCGAGGAAATCTGGAGTGTGTGAAGACGATCGCCAAC
AGCGGGCTGGATGTTTATGCGCACAACATAGAGACGGTTGAGAAGCTCAC
TCCCTATGTGCGCGACCGGCGCGCCCACTACCGCCAGACCCTGCAAGTGC
TAACCGAAGCGAAGAGATTCAACCCCAATCTCATCACCAAGAGTTCAATT
ATGCTGGGACTTGGCGAGACCGACGAGGAGATCGAGA

BS06851.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5231-PA 1143 Las-RA 1..871 17..887 4355 100 Plus
CG5231-PB 573 Las-RB 1..550 17..566 2750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:19:05
Subject Length Description Subject Range Query Range Score Percent Strand
Las-RC 1373 CG5231-RC 93..963 17..887 4355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:18:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20431818..20432150 409..77 1665 100 Minus
3L 28110227 3L 20431015..20431278 887..624 1320 100 Minus
3L 28110227 3L 20431448..20431605 566..409 790 100 Minus
3L 28110227 3L 20432210..20432269 76..17 300 100 Minus
3L 28110227 3L 20431333..20431391 624..566 295 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:19:03 has no hits.

BS06851.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:06 Download gff for BS06851.5prime
Subject Subject Range Query Range Percent Splice Strand
Las-PA 1..870 17..886 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:37:41 Download gff for BS06851.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5231-PA 1..870 17..886 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:14:05 Download gff for BS06851.5prime
Subject Subject Range Query Range Percent Splice Strand
Las-RC 84..962 7..886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:41:37 Download gff for BS06851.5prime
Subject Subject Range Query Range Percent Splice Strand
Las-RC 84..962 7..886 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:41:37 Download gff for BS06851.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20431016..20431277 625..886 100 <- Minus
3L 20431333..20431390 567..624 100 <- Minus
3L 20431448..20431604 410..566 100 <- Minus
3L 20431818..20432150 77..409 100 <- Minus
3L 20432210..20432278 7..76 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:14:05 Download gff for BS06851.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20424116..20424377 625..886 100 <- Minus
arm_3L 20424433..20424490 567..624 100 <- Minus
arm_3L 20424548..20424704 410..566 100 <- Minus
arm_3L 20424918..20425250 77..409 100 <- Minus
arm_3L 20425310..20425378 7..76 94   Minus

BS06851.complete Sequence

1175 bp (1175 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635645

> BS06851.complete
GAAGTTATCAGTCGACATGTATGTCATGTTGCGAGCTTTAAAAACTCACG
CGGAGGCCCCCATTGTAGTTGCCACCCGTGCGGCATCAACGAATGCGGAG
AAGCTTGAGGAGATTCGTGAACGTCTGGCAAAGGGTCCGAATTTCCATGA
CTTTGTGCAGAATCCGGACAACACCAGAAACGAGTGGGAACAGTACGATG
GAAAGCTACGCCGCGAAAAGGGCGAGGAGCAGCGACTGCGATTGCCGCCT
TGGTTAAAGACCACCATTCCCGTGGGCAAAAACTACGCCAAAATCAAGGC
CCAGATGCGCGAGCTCAAGCTGTCCACCGTCTGCGAGGAGGCCCGGTGTC
CCAACATCGGCGAGTGCTGGGGCGGCGGCGAGCATGGCACCCAGACAGCC
ACGATTATGCTTATGGGCGACACTTGCACCAGAGGCTGTAGATTTTGTTC
GGTGAAAACGGCACGCAAACCACCACCGCTGGATGTAAACGAACCCGTGA
ACACAGCCACGGCAATTGCCTCCTGGGGATTGGATTACATTGTTCTGACC
TCAGTTGATCGAGATGATTTGCCAGACGGTGGCTCGGAGCACATTGCCGA
AACTGTTCGCGAAATTAAGGCGCGCAACTCAAACATCTTTGTGGAGTGCC
TAGTACCTGATTTCCGAGGAAATCTGGAGTGTGTGAAGACGATCGCCAAC
AGCGGGCTGGATGTTTATGCGCACAACATAGAGACGGTTGAGAAGCTCAC
TCCCTATGTGCGCGACCGGCGCGCCCACTACCGCCAGACCCTGCAAGTGC
TAACCGAAGCGAAGAGATTCAACCCCAATCTCATCACCAAGAGTTCAATT
ATGCTGGGACTTGGCGAGACCGACGAGGAGATCGAGAACACCTTGAAGGA
TCTGCGGGAGGCCGGCGTAGATTGCGTGACCCTGGGTCAGTACATGCAGC
CCACGAATAAGCACCTCAAGGTCATCGAATACGTCACGCCCGAGAAGTTC
AAGCACTGGGAAGAGCGCGGCAACGAACTGGGTTTCCTGTACACAGCCAG
TGGACCGCTGGTGCGCAGCTCCTACAAAGCCGGCGAGTTCTTCATCACAA
GTATATTGGAGAATCGCAAGAAGAGGCAAAACGACACTGAAGTTCCCAAG
AAGCAGTAAAAGCTTTCTAGACCAT

BS06851.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:50:25
Subject Length Description Subject Range Query Range Score Percent Strand
Las-RC 1134 CG5231-PC 1..1134 26..1159 5670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
Las-RC 1373 CG5231-RC 93..1237 17..1161 5725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20430741..20431278 1161..624 2690 100 Minus
3L 28110227 3L 20431818..20432150 409..77 1665 100 Minus
3L 28110227 3L 20431448..20431605 566..409 790 100 Minus
3L 28110227 3L 20432210..20432269 76..17 300 100 Minus
3L 28110227 3L 20431333..20431391 624..566 295 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:50:24 has no hits.

BS06851.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:12 Download gff for BS06851.complete
Subject Subject Range Query Range Percent Splice Strand
Las-RC 1..1134 26..1159 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:55 Download gff for BS06851.complete
Subject Subject Range Query Range Percent Splice Strand
Las-RC 79..1243 7..1175 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:02 Download gff for BS06851.complete
Subject Subject Range Query Range Percent Splice Strand
Las-RC 93..1233 17..1157 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:13 Download gff for BS06851.complete
Subject Subject Range Query Range Percent Splice Strand
Las-RC 79..1243 7..1175 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:19 Download gff for BS06851.complete
Subject Subject Range Query Range Percent Splice Strand
Las-RC 93..1233 17..1157 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:19 Download gff for BS06851.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20431818..20432150 77..409 100 <- Minus
3L 20432210..20432269 17..76 100   Minus
3L 20430745..20431277 625..1157 100 <- Minus
3L 20431333..20431390 567..624 100 <- Minus
3L 20431448..20431604 410..566 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:02 Download gff for BS06851.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20423845..20424377 625..1157 100 <- Minus
arm_3L 20424433..20424490 567..624 100 <- Minus
arm_3L 20424548..20424704 410..566 100 <- Minus
arm_3L 20424918..20425250 77..409 100 <- Minus
arm_3L 20425310..20425369 17..76 100   Minus

BS06851.pep Sequence

Translation from 16 to 1158

> BS06851.pep
MYVMLRALKTHAEAPIVVATRAASTNAEKLEEIRERLAKGPNFHDFVQNP
DNTRNEWEQYDGKLRREKGEEQRLRLPPWLKTTIPVGKNYAKIKAQMREL
KLSTVCEEARCPNIGECWGGGEHGTQTATIMLMGDTCTRGCRFCSVKTAR
KPPPLDVNEPVNTATAIASWGLDYIVLTSVDRDDLPDGGSEHIAETVREI
KARNSNIFVECLVPDFRGNLECVKTIANSGLDVYAHNIETVEKLTPYVRD
RRAHYRQTLQVLTEAKRFNPNLITKSSIMLGLGETDEEIENTLKDLREAG
VDCVTLGQYMQPTNKHLKVIEYVTPEKFKHWEERGNELGFLYTASGPLVR
SSYKAGEFFITSILENRKKRQNDTEVPKKQ*

BS06851.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
Las-PC 377 CG5231-PC 1..377 4..380 1991 100 Plus