Clone Sequence Records
BS06855.complete Sequence
1979 bp assembled on 2009-12-07
GenBank Submission: KX804337
> BS06855.complete
GAAGTTATCAGTCGACATGGCGGGTAAACGTGTTTTGGTCATCGATAATG
GATCCTACGAATGCCGCGTGGGCTGGAGCGACTCCAAGGAGCCGGACTTG
CGGTTCCGCAATGTGCTGACCAAGCCGCGCAAGGATCGCAAAAAGGAAGC
AGCTGCTTCGGAGGGATCCGCATCGCAGACAACAGTGGAGCAATCTGCCG
AGATCCAGGTGGGCAATGACATCACCAACATCGAGGCGGTGCGTGCGCAT
CTGAAGAGTCCATTCGAGCGGAATGTGATAACCAACTGGAATCACCAGGA
GCAGATCTTCGACTACATATTCACCAAGATGGGATTCGATGGACAGGACA
AGATCGACCACCCAATCATCCTCACAGAGGCGCTGGCCAACCCCAACTTT
TGCCGCCAGCAGATGAACGAGCTGCTCTTCGAGTGCTACGGTATTCCGTC
TGTATCCTACGGCATAGATGCGCTCTACAGCTGGAAGCATCATCAGCAAA
AGCAGAAAAATATATCCGATGCCCTGATCATTTCCTTTGGCTACAGCACC
ACCCACGTCATTCCCGTGTTAGATGGCAAACTCCAGCTGGAGCATGTGCG
TCGCCTGAATGTGGGTGGCTACCACATCATCACCTACCTCTTCCGGCTCA
TGCAAATGAAGTATCCCGTCCATCTGAATGCCATCACCATCAGTCGTATG
GAGAAATTGGTCCATGAGCACTGCCACATTGCTGTTGATTACAAGGAGGA
GCTGGTGCAATGGGCCCAGATGGACTATTACGACGAGCACATAATGAAGA
TACAACTGCCGTACAATGCGGTGACCGCCACTAACGCCATGCTAACCGCT
GAGCAGAAGCAGGAGAAGCGTCGCGAGCTGGCACATCGTCTGCTGGACAT
AAAAAAAAACCGGGAGCAGGAGAAACTGCGCGAGGATGAGCAGCAGTTAT
TCGTCTACAACAAGCTGAGGCAACTGTACGAGCAGAAAAAGCTGGACAAG
TTTGAGCGAGCTCTACAGCAACAGCAGATTGGTACATTGGAGGACTTGGA
TTCCCTCATTGCAACCATAAACTCGCGTATTAAGCGTGCCCAGGAGAGAG
CTCAGAGTGGCCCGCGCCCCAGCAAGCAGCAGGAGAGGCTGAACAAGATG
CCGAAACCTCCAGAGGGCATGTCCCAGGCGGACTGGTTGGCCGAACTCCA
GGGCAAGCGGGAGAAAATACTCGGGCGCAAGCAGGCGCGCCAGCAGCAGC
GATCCGAGCAGGCCAAGCGACACACCCACGCCGCGCAGGAACGGATGCGA
ATCATTTCATCACTGGCCAAGAACGAGAAGCGGCGCAAGGCGAACGGCGA
GGAAGAGGACGATGGCTTTGGGATGAACGACAACGACTGGGATGTGTACA
AGCGAATCAATCGCTACAACGACGACAGCGATTCGGATGCAGATAACGAA
AAGTTGATGCAGTTCGATAAGATCCTAAATCACTATGATGCCAACACCGA
TGGCAACTCCAATGTTCCGCCACAGAGTGCCGCCGAGAACTACCAGCTGC
ACTTTGGGGTTGAGAACATTCGCGTGCCGGAGGTTCTATTCCAGCCCAGC
ATGATTGGTTGCTCAGAGGCGGGGCTAGCAGAACTAATAGCATTCGTGCT
GAAGCTATTTCCCGCCGCTGAGCAGCAGCGCCTGGTTGAGCACGTGTACC
TAACCGGCGGTTGTGCCCAATTCAAGGGTCTCAAGGAGCGACTAATCAAG
GAGCTCATGGAAATGCGACCGTTTCAATCAAAGTTCGCCATCTACGAGTC
GGATGAGCCAACTTTAAGCGCCTGGCTGGGAGCATGTGTGCACGCAGGAG
AGCCCACCTTCGGTCAGACGCTGACCACGCGTCAGGACCACCAGGAGCAT
GGCAGAGAGTTCTTTCGGGAGCACACAGCTAGCAATATCTTTTATCCTAC
ACCAAAAGATTAAAAGCTTTCTAGACCAT
BS06855.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:26:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp5-RB | 1947 | CG7940-PB | 1..1947 | 17..1963 | 9735 | 100 | Plus |
| Arp5-RA | 1947 | CG7940-PA | 1..1947 | 17..1963 | 9735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:26:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp5-RB | 2080 | CG7940-RB | 83..2029 | 17..1963 | 9735 | 100 | Plus |
| Arp5-RA | 2320 | CG7940-RA | 323..2269 | 17..1963 | 9735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:26:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18186373..18187824 | 512..1963 | 7260 | 100 | Plus |
| 3R | 32079331 | 3R | 18185820..18186314 | 17..511 | 2475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:26:29 has no hits.
BS06855.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:02 Download gff for
BS06855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp5-RA | 302..2246 | 17..1961 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:17 Download gff for
BS06855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp5-RA | 323..2267 | 17..1961 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:28 Download gff for
BS06855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp5-RA | 302..2246 | 17..1961 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:30 Download gff for
BS06855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp5-RA | 323..2267 | 17..1961 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:30 Download gff for
BS06855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18185820..18186314 | 17..511 | 100 | -> | Plus |
| 3R | 18186373..18187822 | 512..1961 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:17 Download gff for
BS06855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14011542..14012036 | 17..511 | 100 | -> | Plus |
| arm_3R | 14012095..14013544 | 512..1961 | 100 | | Plus |
BS06855.3prime Sequence
896 bp (700 high quality bases) assembled on 2005-12-04
> BS06855.3prime
ATGGTCTAGAAAGCTTTTAATCTTTTGGTGTAGGATAAAAGATATTGCTA
GCTGTGTGCTCCCGAAAGAACTCTCTGCCATGCTCCTGGTGGTCCTGACG
CGTGGTCAGCGTCTGACCGAAGGTGGGCTCTCCTGCGTGCACACATGCTC
CCAGCCAGGCGCTTAAAGTTGGCTCATCCGACTCGTAGATGGCGAACTTT
GATTGAAACGGTCGCATTTCCATGAGCTCCTTGATTAGTCGCTCCTTGAG
ACCCTTGAATTGGGCACAACCGCCGGTTAGGTACACGTGCTCAACCAGGC
GCTGCTGCTCAGCGGCGGGAAATAGCTTCAGCACGAATGCTATTAGTTCT
GCTAGCCCCGCCTCTGAGCAACCAATCATGCTGGGCTGGAATAGAACCTC
CGGCACGCGAATGTTCTCAACCCCAAAGTGCAGCTGGTAGTTCTCGGCGG
CACTCTGTGGCGGAACATTGGAGTTGCCATCGGTGTTGGCATCATAGTGA
TTTAGGATCTTATCGAACTGCATCAACTTTTCGTTATCTGCATCCGAATC
GCTGTCGTCGTTGTAGCGATTGATTCGCTTGTACACATCCCAGTCGTTGT
CGTTCATCCCAAAGCCATCGTCCTCTTCCTCGCCGTTCGCCTTGCGCCGC
TTCTCGTTCTTGGCCAGTGATGAAATGATTCGCATCCGTTCCTGCGCGGC
GTGGGTGTGTCGCTTGGCCTGCTCGGATCGCTGCTGCTGGCGCGCCTGCT
TGCGCCCGAGTATTTTCTCCCGCTTGCCCTGGAGTTCGGCCAACCAGTCC
GCCTGGGACATGCCCTCTGGAGGTTTCGGCATCTTGTTCAGCCTCTCCTG
CTGCTTGCTGGGGCGCGGGCCACTCTGAGCTCTCTCCTGGGCACGC
BS06855.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7940-PA | 1947 | CG7940-RA | 1068..1947 | 896..17 | 4400 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:44:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp5-RB | 2080 | CG7940-RB | 1150..2029 | 896..17 | 4400 | 100 | Minus |
| Arp5-RA | 2320 | CG7940-RA | 1390..2269 | 896..17 | 4400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:43:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18186945..18187824 | 896..17 | 4400 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:43:58 has no hits.
BS06855.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:11 Download gff for
BS06855.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7940-PA | 1068..1947 | 17..896 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:37:48 Download gff for
BS06855.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7940-PA | 1068..1947 | 17..896 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:57:08 Download gff for
BS06855.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp5-RA | 1390..2274 | 10..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:15:27 Download gff for
BS06855.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp5-RA | 1390..2274 | 10..896 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:15:27 Download gff for
BS06855.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18186945..18187820 | 21..896 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:57:08 Download gff for
BS06855.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14012667..14013542 | 21..896 | 100 | -> | Minus |
BS06855.5prime Sequence
935 bp (758 high quality bases) assembled on 2005-12-04
> BS06855.5prime
GAAGTTATCAGTCGACATGGCGGGTAAACGTGTTTTGGTCATCGATAATG
GATCCTACGAATGCCGCGTGGGCTGGAGCGACTCCAAGGAGCCGGACTTG
CGGTTCCGCAATGTGCTGACCAAGCCGCGCAAGGATCGCAAAAAGGAAGC
AGCTGCTTCGGAGGGATCCGCATCGCAGACAACAGTGGAGCAATCTGCCG
AGATCCAGGTGGGCAATGACATCACCAACATCGAGGCGGTGCGTGCGCAT
CTGAAGAGTCCATTCGAGCGGAATGTGATAACCAACTGGAATCACCAGGA
GCAGATCTTCGACTACATATTCACCAAGATGGGATTCGATGGACAGGACA
AGATCGACCACCCAATCATCCTCACAGAGGCGCTGGCCAACCCCAACTTT
TGCCGCCAGCAGATGAACGAGCTGCTCTTCGAGTGCTACGGTATTCCGTC
TGTATCCTACGGCATAGATGCGCTCTACAGCTGGAAGCATCATCAGCAAA
AGCAGAAAAATATATCCGATGCCCTGATCATTTCCTTTGGCTACAGCACC
ACCCACGTCATTCCCGTGTTAGATGGCAAACTCCAGCTGGAGCATGTGCG
TCGCCTGAATGTGGGTGGCTACCACATCATCACCTACCTCTTCCGGCTCA
TGCAAATGAAGTATCCCGTCCATCTGAATGCCATCACCATCAGTCGTATG
GAGAAATTGGTCCATGAGCACTGCCACATTGCTGTTGATTACAAGGAGGA
GCTGGTGCAATGGGCCCAGATGGACTATTACGACGAGCACATAATGAAGA
TACAACTGCCGTACAATGCGGTGACCGCCACTAACGCCATGCTAACCGCT
GAGCAGAAGCANGAGAAGCGTCGCGAGCTGGCACATCGTCTGCTGGACAT
AAAAAAAAACCGGGAGCAGGAGAAACTGCGCGAGG
BS06855.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7940-PA | 1947 | CG7940-RA | 1..919 | 17..935 | 4576 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:56:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp5-RB | 2080 | CG7940-RB | 83..1001 | 17..935 | 4584 | 99.9 | Plus |
| Arp5-RA | 2320 | CG7940-RA | 323..1241 | 17..935 | 4584 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:56:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18185820..18186314 | 17..511 | 2475 | 100 | Plus |
| 3R | 32079331 | 3R | 18186373..18186796 | 512..935 | 2109 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:56:46 has no hits.
BS06855.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:12 Download gff for
BS06855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7940-PA | 1..919 | 17..935 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:37:49 Download gff for
BS06855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7940-PA | 1..919 | 17..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:37:10 Download gff for
BS06855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp5-RA | 320..1241 | 11..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:33:37 Download gff for
BS06855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp5-RA | 320..1241 | 11..935 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:33:37 Download gff for
BS06855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18185817..18186314 | 11..511 | 99 | -> | Plus |
| 3R | 18186373..18186796 | 512..935 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:37:10 Download gff for
BS06855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14011539..14012036 | 11..511 | 99 | -> | Plus |
| arm_3R | 14012095..14012518 | 512..935 | 99 | | Plus |
BS06855.pep Sequence
Translation from 16 to 1962
> BS06855.pep
MAGKRVLVIDNGSYECRVGWSDSKEPDLRFRNVLTKPRKDRKKEAAASEG
SASQTTVEQSAEIQVGNDITNIEAVRAHLKSPFERNVITNWNHQEQIFDY
IFTKMGFDGQDKIDHPIILTEALANPNFCRQQMNELLFECYGIPSVSYGI
DALYSWKHHQQKQKNISDALIISFGYSTTHVIPVLDGKLQLEHVRRLNVG
GYHIITYLFRLMQMKYPVHLNAITISRMEKLVHEHCHIAVDYKEELVQWA
QMDYYDEHIMKIQLPYNAVTATNAMLTAEQKQEKRRELAHRLLDIKKNRE
QEKLREDEQQLFVYNKLRQLYEQKKLDKFERALQQQQIGTLEDLDSLIAT
INSRIKRAQERAQSGPRPSKQQERLNKMPKPPEGMSQADWLAELQGKREK
ILGRKQARQQQRSEQAKRHTHAAQERMRIISSLAKNEKRRKANGEEEDDG
FGMNDNDWDVYKRINRYNDDSDSDADNEKLMQFDKILNHYDANTDGNSNV
PPQSAAENYQLHFGVENIRVPEVLFQPSMIGCSEAGLAELIAFVLKLFPA
AEQQRLVEHVYLTGGCAQFKGLKERLIKELMEMRPFQSKFAIYESDEPTL
SAWLGACVHAGEPTFGQTLTTRQDHQEHGREFFREHTASNIFYPTPKD*
BS06855.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:33:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp5-PB | 648 | CG7940-PB | 1..648 | 1..648 | 3396 | 100 | Plus |
| Arp5-PA | 648 | CG7940-PA | 1..648 | 1..648 | 3396 | 100 | Plus |
| Arp6-PA | 398 | CG11678-PA | 5..244 | 6..266 | 223 | 26.1 | Plus |
| Act87E-PC | 376 | CG18290-PC | 9..228 | 7..246 | 219 | 22.9 | Plus |
| Act87E-PB | 376 | CG18290-PB | 9..228 | 7..246 | 219 | 22.9 | Plus |
| Arp6-PA | 398 | CG11678-PA | 243..391 | 484..629 | 179 | 30.9 | Plus |
| Act87E-PC | 376 | CG18290-PC | 252..367 | 514..629 | 158 | 29.3 | Plus |
