Clone BS06856 Report

Search the DGRC for BS06856

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:68
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptNmdmc-RB
Protein status:BS06856.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06856.3prime Sequence

960 bp (835 high quality bases) assembled on 2005-12-04

> BS06856.3prime
ATGGTCTAGAAAGCTTTCAGGAGGACTTGCGATCATCGAACTGCTTCCTG
GCTGCCTTCAGCGTGTTGTGCATCAGCATGGCCACCGTCATGGGACCAAC
TCCGCCGGGCACAGGAGTGATGTGGCCGGCGACCTGGCGAACTTCTTCAA
AGTCCACGTCTCCGACCAGCTTAAACTGGCCAGTGCTCTCATCCTTGATG
CGGTTGATGCCCACGTCGATGACACAGGCTCCGGGCTTAACCATGTCCTT
GGTGATCAAACCCGGCTTTCCCACTGCGACCACAATGATATCCGCTTGGC
GGCAATGGCGAGCCAGTTCCTTGGGCGGTGTATACCTGTGGCAGATGGTC
ACCGTGGCATCCATTGCCTTGGTGGCATACTTGCCATCCGCGTGCAGCAA
GATTGCCATCGGTAGACTGACATTCTTGGAGCGTCCCACCACAACGGCGT
TACGACCGAGAGTTTCGATTTTCATATGCTCCAACAGTCGCTTGACTCCC
AGCGGCGTGGCCGGAATATTGGCCTCCATGTCCAGAGCCGTGCGTCCGAT
GTTGACCTCATTGAAGCCATCCACATCCTTGTCCACATCGACGGCATTGC
AGATGGTGCGCTCATTGATGTGCTCGGGTACCGGCAGCTGCACCAGTATC
CCCGTGACCTGGGGATCCTTGTTCAGATCGGCAATCAGTTGCAGCAGCTC
CTCCTGCGTGGTAGAGGCGGGCAATCTCTTGGTCTCACTGGAGATGCCCA
CCTCCCGGCAGGCGACCATCTTGTTAGCCACATACTTCTCGCTAGCCGGA
TCCTCGCCCACAATGACGGCCGTGAGATGGGGCTTCGGATAGCCAGCAGC
CTCCATTCCCTTGAGCTCGTGTGCTAGTTGGGTGCGCACCTCCTGGGCTA
TGGCCTTGCCATCGATAATTTGAGCCATGTTGCTTGTGAATCGCATGTCG
ACTGATAACT

BS06856.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG18466-PB 930 Nmdmc-RB 1..930 946..17 4650 100 Minus
CG18466-PA 912 Nmdmc-RA 1..912 928..17 4560 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:05:29
Subject Length Description Subject Range Query Range Score Percent Strand
Nmdmc-RB 1257 CG18466-RB 179..1109 946..16 4655 100 Minus
Nmdmc-RA 1156 CG18466-RA 89..1008 935..16 4600 100 Minus
Nmdmc-RC 1233 CG18466-RC 167..1085 934..16 4595 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:05:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9042852..9043641 145..934 3950 100 Plus
3R 32079331 3R 9042656..9042793 16..153 675 99.3 Plus
3R 32079331 3R 10701025..10701134 172..63 220 80 Minus
Blast to na_te.dros performed on 2015-02-09 01:05:24 has no hits.

BS06856.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:13 Download gff for BS06856.3prime
Subject Subject Range Query Range Percent Splice Strand
Nmdmc-PB 1..930 17..946 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:37:50 Download gff for BS06856.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18466-PB 1..930 17..946 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:51:20 Download gff for BS06856.3prime
Subject Subject Range Query Range Percent Splice Strand
Nmdmc-RB 174..1113 11..951 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:06:19 Download gff for BS06856.3prime
Subject Subject Range Query Range Percent Splice Strand
Nmdmc-RB 174..1113 11..951 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:06:19 Download gff for BS06856.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9042652..9042784 11..144 98 <- Plus
3R 9042852..9043639 145..932 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:51:20 Download gff for BS06856.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4868374..4868506 11..144 98 <- Plus
arm_3R 4868574..4869361 145..932 100 <- Plus

BS06856.5prime Sequence

947 bp (748 high quality bases) assembled on 2005-12-04

> BS06856.5prime
GAAGTTATCAGTCGACATGCGATTCACAAGCAACATGGCTCAAATTATCG
ATGGCAAGGCCATAGCCCAGGAGGTGCGCACCCAACTAGCACACGAGCTC
AAGGGAATGGAGGCTGCTGGCTATCCGAAGCCCCATCTCACGGCCGTCAT
TGTGGGCGAGGATCCGGCTAGCGAGAAGTATGTGGCTAACAAGATGGTCG
CCTGCCGGGAGGTGGGCATCTCCAGTGAGACCAAGAGATTGCCCGCCTCT
ACCACGCAGGAGGAGCTGCTGCAACTGATTGCCGATCTGAACAAGGATCC
CCAGGTCACGGGGATACTGGTGCAGCTGCCGGTACCCGAGCACATCAATG
AGCGCACCATCTGCAATGCCGTCGATGTGGACAAGGATGTGGATGGCTTC
AATGAGGTCAACATCGGACGCACGGCTCTGGACATGGAGGCCAATATTCC
GGCCACGCCGCTGGGAGTCAAGCGACTGTTGGAGCATATGAAAATCGAAA
CTCTCGGTCGTAACGCCGTTGTGGTGGGACGCTCCAAGAATGTCAGTCTA
CCGATGGCAATCTTGCTGCACGCGGATGGCAAGTATGCCACCAAGGCAAT
GGATGCCACGGTGACCATCTGCCACAGGTATACACCGCCCAAGGAACTGG
CTCGCCATTGCCGCCAAGCGGATATCATTGTGGTCGCAGTGGGAAAGCCG
GGTTTGATCACCAAGGACATGGTTAAGCCCGGAGCCTGTGTCATCGACGT
GGGCATCAACCGCATCAAGGATGAGAGCACTGGCCAGTTTAAGCTGGTCG
GAGACGTGGACTTTGAAGAAAGTCGCCAGGTCGCCGGCCACATCACTCCT
GTGCCCGGCGGAGTTGGTCCCATGACGGTGGCCATGCTGATGCACAACAC
GCTGAAAGCAGCCAGGAAGCAGTTCGATGATCGCCAGTCCTCCTGAA

BS06856.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG18466-PB 930 Nmdmc-RB 1..930 17..946 4550 99.5 Plus
CG18466-PA 912 Nmdmc-RA 1..912 35..946 4460 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:43:15
Subject Length Description Subject Range Query Range Score Percent Strand
Nmdmc-RB 1257 CG18466-RB 179..1109 17..947 4595 99.6 Plus
Nmdmc-RA 1156 CG18466-RA 89..1008 28..947 4540 99.6 Plus
Nmdmc-RC 1233 CG18466-RC 167..1085 29..947 4535 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9042852..9043641 818..29 3950 100 Minus
3R 32079331 3R 9042656..9042793 947..810 615 96.4 Minus
3R 32079331 3R 10701025..10701134 791..900 205 79.1 Plus
Blast to na_te.dros performed on 2015-02-12 00:43:12 has no hits.

BS06856.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:14 Download gff for BS06856.5prime
Subject Subject Range Query Range Percent Splice Strand
Nmdmc-PB 1..929 17..945 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:37:52 Download gff for BS06856.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18466-PB 1..929 17..945 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:02:25 Download gff for BS06856.5prime
Subject Subject Range Query Range Percent Splice Strand
Nmdmc-RB 174..1109 12..947 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:15:45 Download gff for BS06856.5prime
Subject Subject Range Query Range Percent Splice Strand
Nmdmc-RB 174..1109 12..947 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:15:45 Download gff for BS06856.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9042656..9042784 819..947 96 <- Minus
3R 9042852..9043639 31..818 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:02:25 Download gff for BS06856.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4868574..4869361 31..818 100 <- Minus
arm_3R 4868378..4868506 819..947 96 <- Minus

BS06856.complete Sequence

962 bp (962 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635646

> BS06856.complete
GAAGTTATCAGTCGACATGCGATTCACAAGCAACATGGCTCAAATTATCG
ATGGCAAGGCCATAGCCCAGGAGGTGCGCACCCAACTAGCACACGAGCTC
AAGGGAATGGAGGCTGCTGGCTATCCGAAGCCCCATCTCACGGCCGTCAT
TGTGGGCGAGGATCCGGCTAGCGAGAAGTATGTGGCTAACAAGATGGTCG
CCTGCCGGGAGGTGGGCATCTCCAGTGAGACCAAGAGATTGCCCGCCTCT
ACCACGCAGGAGGAGCTGCTGCAACTGATTGCCGATCTGAACAAGGATCC
CCAGGTCACGGGGATACTGGTGCAGCTGCCGGTACCCGAGCACATCAATG
AGCGCACCATCTGCAATGCCGTCGATGTGGACAAGGATGTGGATGGCTTC
AATGAGGTCAACATCGGACGCACGGCTCTGGACATGGAGGCCAATATTCC
GGCCACGCCGCTGGGAGTCAAGCGACTGTTGGAGCATATGAAAATCGAAA
CTCTCGGTCGTAACGCCGTTGTGGTGGGACGCTCCAAGAATGTCAGTCTA
CCGATGGCAATCTTGCTGCACGCGGATGGCAAGTATGCCACCAAGGCAAT
GGATGCCACGGTGACCATCTGCCACAGGTATACACCGCCCAAGGAACTGG
CTCGCCATTGCCGCCAAGCGGATATCATTGTGGTCGCAGTGGGAAAGCCG
GGTTTGATCACCAAGGACATGGTTAAGCCCGGAGCCTGTGTCATCGACGT
GGGCATCAACCGCATCAAGGATGAGAGCACTGGCCAGTTTAAGCTGGTCG
GAGACGTGGACTTTGAAGAAGTTCGCCAGGTCGCCGGCCACATCACTCCT
GTGCCCGGCGGAGTTGGTCCCATGACGGTGGCCATGCTGATGCACAACAC
GCTGAAGGCAGCCAGGAAGCAGTTCGATGATCGCAAGTCCTCCTGAAAGC
TTTCTAGACCAT

BS06856.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:32:26
Subject Length Description Subject Range Query Range Score Percent Strand
Nmdmc-RB 930 CG18466-PB 1..930 17..946 4650 100 Plus
Nmdmc-RC 912 CG18466-PC 1..912 35..946 4560 100 Plus
Nmdmc-RA 912 CG18466-PA 1..912 35..946 4560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
Nmdmc-RB 1257 CG18466-RB 179..1109 17..947 4655 100 Plus
Nmdmc-RA 1156 CG18466-RA 89..1008 28..947 4600 100 Plus
Nmdmc-RC 1233 CG18466-RC 167..1085 29..947 4595 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9042852..9043641 818..29 3950 100 Minus
3R 32079331 3R 9042656..9042793 947..810 675 99.3 Minus
3R 32079331 3R 10701025..10701134 791..900 220 80 Plus
Blast to na_te.dros performed on 2014-11-27 20:32:26 has no hits.

BS06856.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:58 Download gff for BS06856.complete
Subject Subject Range Query Range Percent Splice Strand
Nmdmc-RB 1..930 17..946 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:38 Download gff for BS06856.complete
Subject Subject Range Query Range Percent Splice Strand
Nmdmc-RB 168..1107 12..952 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:13 Download gff for BS06856.complete
Subject Subject Range Query Range Percent Splice Strand
Nmdmc-RB 179..1107 17..945 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:58 Download gff for BS06856.complete
Subject Subject Range Query Range Percent Splice Strand
Nmdmc-RB 168..1107 12..952 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:20 Download gff for BS06856.complete
Subject Subject Range Query Range Percent Splice Strand
Nmdmc-RB 179..1107 17..945 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:20 Download gff for BS06856.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9042658..9042784 819..945 100 <- Minus
3R 9042852..9043639 31..818 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:13 Download gff for BS06856.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4868380..4868506 819..945 100 <- Minus
arm_3R 4868574..4869361 31..818 100 <- Minus

BS06856.pep Sequence

Translation from 16 to 945

> BS06856.pep
MRFTSNMAQIIDGKAIAQEVRTQLAHELKGMEAAGYPKPHLTAVIVGEDP
ASEKYVANKMVACREVGISSETKRLPASTTQEELLQLIADLNKDPQVTGI
LVQLPVPEHINERTICNAVDVDKDVDGFNEVNIGRTALDMEANIPATPLG
VKRLLEHMKIETLGRNAVVVGRSKNVSLPMAILLHADGKYATKAMDATVT
ICHRYTPPKELARHCRQADIIVVAVGKPGLITKDMVKPGACVIDVGINRI
KDESTGQFKLVGDVDFEEVRQVAGHITPVPGGVGPMTVAMLMHNTLKAAR
KQFDDRKSS*

BS06856.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
Nmdmc-PB 309 CG18466-PB 1..309 1..309 1576 100 Plus
Nmdmc-PC 303 CG18466-PC 1..303 7..309 1545 100 Plus
Nmdmc-PA 303 CG18466-PA 1..303 7..309 1545 100 Plus
pug-PC 934 CG4067-PC 4..292 8..301 551 45.3 Plus
pug-PA 934 CG4067-PA 4..292 8..301 551 45.3 Plus