Clone Sequence Records
BS06856.3prime Sequence
960 bp (835 high quality bases) assembled on 2005-12-04
> BS06856.3prime
ATGGTCTAGAAAGCTTTCAGGAGGACTTGCGATCATCGAACTGCTTCCTG
GCTGCCTTCAGCGTGTTGTGCATCAGCATGGCCACCGTCATGGGACCAAC
TCCGCCGGGCACAGGAGTGATGTGGCCGGCGACCTGGCGAACTTCTTCAA
AGTCCACGTCTCCGACCAGCTTAAACTGGCCAGTGCTCTCATCCTTGATG
CGGTTGATGCCCACGTCGATGACACAGGCTCCGGGCTTAACCATGTCCTT
GGTGATCAAACCCGGCTTTCCCACTGCGACCACAATGATATCCGCTTGGC
GGCAATGGCGAGCCAGTTCCTTGGGCGGTGTATACCTGTGGCAGATGGTC
ACCGTGGCATCCATTGCCTTGGTGGCATACTTGCCATCCGCGTGCAGCAA
GATTGCCATCGGTAGACTGACATTCTTGGAGCGTCCCACCACAACGGCGT
TACGACCGAGAGTTTCGATTTTCATATGCTCCAACAGTCGCTTGACTCCC
AGCGGCGTGGCCGGAATATTGGCCTCCATGTCCAGAGCCGTGCGTCCGAT
GTTGACCTCATTGAAGCCATCCACATCCTTGTCCACATCGACGGCATTGC
AGATGGTGCGCTCATTGATGTGCTCGGGTACCGGCAGCTGCACCAGTATC
CCCGTGACCTGGGGATCCTTGTTCAGATCGGCAATCAGTTGCAGCAGCTC
CTCCTGCGTGGTAGAGGCGGGCAATCTCTTGGTCTCACTGGAGATGCCCA
CCTCCCGGCAGGCGACCATCTTGTTAGCCACATACTTCTCGCTAGCCGGA
TCCTCGCCCACAATGACGGCCGTGAGATGGGGCTTCGGATAGCCAGCAGC
CTCCATTCCCTTGAGCTCGTGTGCTAGTTGGGTGCGCACCTCCTGGGCTA
TGGCCTTGCCATCGATAATTTGAGCCATGTTGCTTGTGAATCGCATGTCG
ACTGATAACT
BS06856.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18466-PB | 930 | Nmdmc-RB | 1..930 | 946..17 | 4650 | 100 | Minus |
CG18466-PA | 912 | Nmdmc-RA | 1..912 | 928..17 | 4560 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:05:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nmdmc-RB | 1257 | CG18466-RB | 179..1109 | 946..16 | 4655 | 100 | Minus |
Nmdmc-RA | 1156 | CG18466-RA | 89..1008 | 935..16 | 4600 | 100 | Minus |
Nmdmc-RC | 1233 | CG18466-RC | 167..1085 | 934..16 | 4595 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:05:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9042852..9043641 | 145..934 | 3950 | 100 | Plus |
3R | 32079331 | 3R | 9042656..9042793 | 16..153 | 675 | 99.3 | Plus |
3R | 32079331 | 3R | 10701025..10701134 | 172..63 | 220 | 80 | Minus |
Blast to na_te.dros performed on 2015-02-09 01:05:24 has no hits.
BS06856.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:13 Download gff for
BS06856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmdmc-PB | 1..930 | 17..946 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:37:50 Download gff for
BS06856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18466-PB | 1..930 | 17..946 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:51:20 Download gff for
BS06856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmdmc-RB | 174..1113 | 11..951 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:06:19 Download gff for
BS06856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmdmc-RB | 174..1113 | 11..951 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:06:19 Download gff for
BS06856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9042652..9042784 | 11..144 | 98 | <- | Plus |
3R | 9042852..9043639 | 145..932 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:51:20 Download gff for
BS06856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4868374..4868506 | 11..144 | 98 | <- | Plus |
arm_3R | 4868574..4869361 | 145..932 | 100 | <- | Plus |
BS06856.5prime Sequence
947 bp (748 high quality bases) assembled on 2005-12-04
> BS06856.5prime
GAAGTTATCAGTCGACATGCGATTCACAAGCAACATGGCTCAAATTATCG
ATGGCAAGGCCATAGCCCAGGAGGTGCGCACCCAACTAGCACACGAGCTC
AAGGGAATGGAGGCTGCTGGCTATCCGAAGCCCCATCTCACGGCCGTCAT
TGTGGGCGAGGATCCGGCTAGCGAGAAGTATGTGGCTAACAAGATGGTCG
CCTGCCGGGAGGTGGGCATCTCCAGTGAGACCAAGAGATTGCCCGCCTCT
ACCACGCAGGAGGAGCTGCTGCAACTGATTGCCGATCTGAACAAGGATCC
CCAGGTCACGGGGATACTGGTGCAGCTGCCGGTACCCGAGCACATCAATG
AGCGCACCATCTGCAATGCCGTCGATGTGGACAAGGATGTGGATGGCTTC
AATGAGGTCAACATCGGACGCACGGCTCTGGACATGGAGGCCAATATTCC
GGCCACGCCGCTGGGAGTCAAGCGACTGTTGGAGCATATGAAAATCGAAA
CTCTCGGTCGTAACGCCGTTGTGGTGGGACGCTCCAAGAATGTCAGTCTA
CCGATGGCAATCTTGCTGCACGCGGATGGCAAGTATGCCACCAAGGCAAT
GGATGCCACGGTGACCATCTGCCACAGGTATACACCGCCCAAGGAACTGG
CTCGCCATTGCCGCCAAGCGGATATCATTGTGGTCGCAGTGGGAAAGCCG
GGTTTGATCACCAAGGACATGGTTAAGCCCGGAGCCTGTGTCATCGACGT
GGGCATCAACCGCATCAAGGATGAGAGCACTGGCCAGTTTAAGCTGGTCG
GAGACGTGGACTTTGAAGAAAGTCGCCAGGTCGCCGGCCACATCACTCCT
GTGCCCGGCGGAGTTGGTCCCATGACGGTGGCCATGCTGATGCACAACAC
GCTGAAAGCAGCCAGGAAGCAGTTCGATGATCGCCAGTCCTCCTGAA
BS06856.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:34:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18466-PB | 930 | Nmdmc-RB | 1..930 | 17..946 | 4550 | 99.5 | Plus |
CG18466-PA | 912 | Nmdmc-RA | 1..912 | 35..946 | 4460 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:43:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nmdmc-RB | 1257 | CG18466-RB | 179..1109 | 17..947 | 4595 | 99.6 | Plus |
Nmdmc-RA | 1156 | CG18466-RA | 89..1008 | 28..947 | 4540 | 99.6 | Plus |
Nmdmc-RC | 1233 | CG18466-RC | 167..1085 | 29..947 | 4535 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:43:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9042852..9043641 | 818..29 | 3950 | 100 | Minus |
3R | 32079331 | 3R | 9042656..9042793 | 947..810 | 615 | 96.4 | Minus |
3R | 32079331 | 3R | 10701025..10701134 | 791..900 | 205 | 79.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:43:12 has no hits.
BS06856.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:14 Download gff for
BS06856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmdmc-PB | 1..929 | 17..945 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:37:52 Download gff for
BS06856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18466-PB | 1..929 | 17..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:02:25 Download gff for
BS06856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmdmc-RB | 174..1109 | 12..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:15:45 Download gff for
BS06856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmdmc-RB | 174..1109 | 12..947 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:15:45 Download gff for
BS06856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9042656..9042784 | 819..947 | 96 | <- | Minus |
3R | 9042852..9043639 | 31..818 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:02:25 Download gff for
BS06856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4868574..4869361 | 31..818 | 100 | <- | Minus |
arm_3R | 4868378..4868506 | 819..947 | 96 | <- | Minus |
BS06856.complete Sequence
962 bp (962 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635646
> BS06856.complete
GAAGTTATCAGTCGACATGCGATTCACAAGCAACATGGCTCAAATTATCG
ATGGCAAGGCCATAGCCCAGGAGGTGCGCACCCAACTAGCACACGAGCTC
AAGGGAATGGAGGCTGCTGGCTATCCGAAGCCCCATCTCACGGCCGTCAT
TGTGGGCGAGGATCCGGCTAGCGAGAAGTATGTGGCTAACAAGATGGTCG
CCTGCCGGGAGGTGGGCATCTCCAGTGAGACCAAGAGATTGCCCGCCTCT
ACCACGCAGGAGGAGCTGCTGCAACTGATTGCCGATCTGAACAAGGATCC
CCAGGTCACGGGGATACTGGTGCAGCTGCCGGTACCCGAGCACATCAATG
AGCGCACCATCTGCAATGCCGTCGATGTGGACAAGGATGTGGATGGCTTC
AATGAGGTCAACATCGGACGCACGGCTCTGGACATGGAGGCCAATATTCC
GGCCACGCCGCTGGGAGTCAAGCGACTGTTGGAGCATATGAAAATCGAAA
CTCTCGGTCGTAACGCCGTTGTGGTGGGACGCTCCAAGAATGTCAGTCTA
CCGATGGCAATCTTGCTGCACGCGGATGGCAAGTATGCCACCAAGGCAAT
GGATGCCACGGTGACCATCTGCCACAGGTATACACCGCCCAAGGAACTGG
CTCGCCATTGCCGCCAAGCGGATATCATTGTGGTCGCAGTGGGAAAGCCG
GGTTTGATCACCAAGGACATGGTTAAGCCCGGAGCCTGTGTCATCGACGT
GGGCATCAACCGCATCAAGGATGAGAGCACTGGCCAGTTTAAGCTGGTCG
GAGACGTGGACTTTGAAGAAGTTCGCCAGGTCGCCGGCCACATCACTCCT
GTGCCCGGCGGAGTTGGTCCCATGACGGTGGCCATGCTGATGCACAACAC
GCTGAAGGCAGCCAGGAAGCAGTTCGATGATCGCAAGTCCTCCTGAAAGC
TTTCTAGACCAT
BS06856.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:32:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nmdmc-RB | 930 | CG18466-PB | 1..930 | 17..946 | 4650 | 100 | Plus |
Nmdmc-RC | 912 | CG18466-PC | 1..912 | 35..946 | 4560 | 100 | Plus |
Nmdmc-RA | 912 | CG18466-PA | 1..912 | 35..946 | 4560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:32:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nmdmc-RB | 1257 | CG18466-RB | 179..1109 | 17..947 | 4655 | 100 | Plus |
Nmdmc-RA | 1156 | CG18466-RA | 89..1008 | 28..947 | 4600 | 100 | Plus |
Nmdmc-RC | 1233 | CG18466-RC | 167..1085 | 29..947 | 4595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:32:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9042852..9043641 | 818..29 | 3950 | 100 | Minus |
3R | 32079331 | 3R | 9042656..9042793 | 947..810 | 675 | 99.3 | Minus |
3R | 32079331 | 3R | 10701025..10701134 | 791..900 | 220 | 80 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:32:26 has no hits.
BS06856.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:58 Download gff for
BS06856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmdmc-RB | 1..930 | 17..946 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:38 Download gff for
BS06856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmdmc-RB | 168..1107 | 12..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:13 Download gff for
BS06856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmdmc-RB | 179..1107 | 17..945 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:58 Download gff for
BS06856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmdmc-RB | 168..1107 | 12..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:20 Download gff for
BS06856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmdmc-RB | 179..1107 | 17..945 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:20 Download gff for
BS06856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9042658..9042784 | 819..945 | 100 | <- | Minus |
3R | 9042852..9043639 | 31..818 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:13 Download gff for
BS06856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4868380..4868506 | 819..945 | 100 | <- | Minus |
arm_3R | 4868574..4869361 | 31..818 | 100 | <- | Minus |
BS06856.pep Sequence
Translation from 16 to 945
> BS06856.pep
MRFTSNMAQIIDGKAIAQEVRTQLAHELKGMEAAGYPKPHLTAVIVGEDP
ASEKYVANKMVACREVGISSETKRLPASTTQEELLQLIADLNKDPQVTGI
LVQLPVPEHINERTICNAVDVDKDVDGFNEVNIGRTALDMEANIPATPLG
VKRLLEHMKIETLGRNAVVVGRSKNVSLPMAILLHADGKYATKAMDATVT
ICHRYTPPKELARHCRQADIIVVAVGKPGLITKDMVKPGACVIDVGINRI
KDESTGQFKLVGDVDFEEVRQVAGHITPVPGGVGPMTVAMLMHNTLKAAR
KQFDDRKSS*
BS06856.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nmdmc-PB | 309 | CG18466-PB | 1..309 | 1..309 | 1576 | 100 | Plus |
Nmdmc-PC | 303 | CG18466-PC | 1..303 | 7..309 | 1545 | 100 | Plus |
Nmdmc-PA | 303 | CG18466-PA | 1..303 | 7..309 | 1545 | 100 | Plus |
pug-PC | 934 | CG4067-PC | 4..292 | 8..301 | 551 | 45.3 | Plus |
pug-PA | 934 | CG4067-PA | 4..292 | 8..301 | 551 | 45.3 | Plus |