Clone BS06860 Report

Search the DGRC for BS06860

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:68
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG5886-RA
Protein status:BS06860.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06860.3prime Sequence

888 bp (822 high quality bases) assembled on 2005-12-04

> BS06860.3prime
ATGGTCTAGAAAGCTTTTAGTTGGCATTGGCATCGATTAGGGGAGGCACT
TCGGATATATCAACAAGTGACTTTGCGGTGATAGCGTCGCCATCACCTAC
GAGCTCCTGGGTGTCTGTCGCAATGTCAACGGTCTGCTCCTTTTCGTTCT
TAACGTTTGAGGCATCACCCGCTGCCTCTAGCTCGGCCTTTGACTCCGTT
GCGGCTGATTCCTGAACGCCGTTCGCCTCACCGTTCGTTGTGGATGCTGC
AGCTTCCGCCGCCGCTGCAGCTGCTGCCTTTGCCTTGGACTTTTTCTCCT
TCTTGCGTATATTCTTCTTGGCATTGTTCGCCTGACGCTGCTCCTCGGCC
TTCTTCTTTTCCTCAATGGAAGTCTTCGATTCATTCGTCGTTAGCAGCTT
CATTTGGTTCTGCAGATTTGCCAATGTTTGCTTCAGTTCCGCACAATTGC
GAGACATCATTTCCATTTTAACATTTTCAGCACTAACTGGCTTGACGTTT
ACTGGCTCTGGTTCAGGAGGCAACTGCGGCAGGGCGGGTATTTCGATCTC
GTGATCCCGCAGGCACTTGTGCAGTGTTGTCCTCTCCAGCTGTAGAGCAC
GCAGTAGCTTCTGCAGCTGCTGTATTTGCTTCTGCAGGCGCTCTGAGTGC
TGCGTCTGCAGACTCTTTTCTGTGGCTAAATCGATCACCATGGCATTAGC
TTTCTCGTACTTTTGCCGCCAGCCCAGCGCCTCCTTCTCGATCTTCTTAG
TGTGCTTGGACATCTTCTCAAGCTCCACCTTGTAGCTGCCGAAAACCTCA
TTGGACTTCTGCAGCGACTGCTGGAAGTCATCGTACTTGGCGGTGTATAT
GTTCAGTTGCTCCTTCAGTTGGTGCTCCCGATCGGTGA

BS06860.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5886-PA 1548 CG5886-RA 677..1548 888..17 4360 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:17:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG5886-RA 1894 CG5886-RA 778..1650 888..16 4365 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:17:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25852873..25853745 888..16 4365 100 Minus
Blast to na_te.dros performed 2015-02-06 12:17:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6874..6938 653..589 108 66.7 Minus

BS06860.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:20 Download gff for BS06860.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5886-PA 678..1548 17..887 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:37:59 Download gff for BS06860.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5886-PA 678..1548 17..887 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:42:22 Download gff for BS06860.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5886-RA 779..1655 8..887 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:50:46 Download gff for BS06860.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5886-RA 779..1655 8..887 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:50:46 Download gff for BS06860.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25852874..25853750 8..887 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:42:22 Download gff for BS06860.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21678596..21679472 8..887 99   Minus

BS06860.5prime Sequence

842 bp (708 high quality bases) assembled on 2005-12-04

> BS06860.5prime
GAAGTTATCAGTCGACATGGAGAAGCTAAGCAAGGCGAAAAAAGTGGCGC
GCGAGGAGAAGCAGCGCGACCAGAAGTTGGAGGAGTTGGTCATGAAATCC
CTTGACGAATGCCCCTCCGCCGAGGAGAAGGTGAAACTTCTGCTGCAACG
CCATGTGGACAGCGAAAAGAATGTAAGCCGGCTGACGGCGGAACTGCGTG
TCCTGCAGCGCCAAATGGAGTCGCAGCAGAGGGAGAAGGAGCAGGTTCAG
CGGGATCTTAACAAGAGCGTCCTGATGCGAGACAAGCTGCAGGAGGTGTG
CCGCGAACAGCAGCGCATCATAAAGTCCGTAAAGAACGAGAGCCTGCTGC
AAATCAAAGTGGAGGAGGAGCGGCGCAAGGAGAGCCAGACAAAGTTCCAA
AGCTCCCTGAACGATGTCCAAAAGTCGCTGGCCAAGAACAACGAGGAGAA
CATCAAGCTGCGCGATTACAACATCGAGATGACCAAGAAGTTAAAGCTGC
TGGCCGAGCAGTACCAAACGAGGGAGCAGCACCTGGAGAAGCTCAATGAA
CAGGTTCAGTTGGAGGCCCAGCTGCACCAGGCCAAGCTGCAAAAATGCCA
GGTGGAGGCTGCCATGGAAAAGGAGATATTGAGCAAGGAAAACCAGATTG
GCCTGGAGAAACTGATGCAAGCGCAACGTGCCATAAAGGATCTCACCGAT
CGGGAGCACCAACTGAAGGAGCAACTGAACATATACACCGCCAAGTACGA
TGACTTCCAGCAGTCGCTGCAGAAGTCCAATGAGGTTTTCGGCAGCTACA
AGGTGGAGCTTGAGAAGATGTCCAAGCACACTAAGAAGATCG

BS06860.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5886-PA 1548 CG5886-RA 1..826 17..842 4130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5886-RA 1894 CG5886-RA 101..927 16..842 4135 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25851919..25852322 88..491 2020 100 Plus
3R 32079331 3R 25852817..25853022 637..842 1030 100 Plus
3R 32079331 3R 25852428..25852575 490..637 740 100 Plus
Y 3667352 Y 1457593..1457737 194..341 435 87.8 Plus
Y 3667352 Y 1883828..1883972 341..194 435 87.8 Minus
Y 3667352 Y 1888797..1888941 341..194 435 87.8 Minus
3R 32079331 3R 25851732..25851806 16..90 375 100 Plus
3L 28110227 3L 23315659..23315764 329..224 290 84.9 Minus
Blast to na_te.dros performed on 2015-02-12 05:06:10 has no hits.

BS06860.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:21 Download gff for BS06860.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5886-PA 1..826 17..842 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:01 Download gff for BS06860.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5886-PA 1..826 17..842 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:13:06 Download gff for BS06860.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5886-RA 95..927 7..842 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:39:47 Download gff for BS06860.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5886-RA 95..927 7..842 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:39:47 Download gff for BS06860.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25852817..25853022 637..842 100   Plus
3R 25851726..25851804 7..88 95 -> Plus
3R 25851920..25852320 89..489 100 -> Plus
3R 25852428..25852574 490..636 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:13:06 Download gff for BS06860.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21677448..21677526 7..88 95 -> Plus
arm_3R 21677642..21678042 89..489 100 -> Plus
arm_3R 21678150..21678296 490..636 100 -> Plus
arm_3R 21678539..21678744 637..842 100   Plus

BS06860.complete Sequence

1580 bp (1580 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635647

> BS06860.complete
GAAGTTATCAGTCGACATGGAGAAGCTAAGCAAGGCGAAAAAAGTGGCGC
GCGAGGAGAAGCAGCGCGACCAGAAGTTGGAGGAGTTGGTCATGAAATCC
CTTGACGAATGCCCCTCCGCCGAGGAGAAGGTGAAACTTCTGCTGCAACG
CCATGTGGACAGCGAAAAGAATGTAAGCCGGCTGACGGCGGAACTGCGTG
TCCTGCAGCGCCAAATGGAGTCGCAGCAGAGGGAGAAGGAGCAGGTTCAG
CGGGATCTTAACAAGAGCGTCCTGATGCGAGACAAGCTGCAGGAGGTGTG
CCGCGAACAGCAGCGCATCATAAAGTCCGTAAAGAACGAGAGCCTGCTGC
AAATCAAAGTGGAGGAGGAGCGGCGCAAGGAGAGCCAGACAAAGTTCCAA
AGCTCCCTGAACGATGTCCAAAAGTCGCTGGCCAAGAACAACGAGGAGAA
CATCAAGCTGCGCGATTACAACATCGAGATGACCAAGAAGTTAAAGCTGC
TGGCCGAGCAGTACCAAACGAGGGAGCAGCACCTGGAGAAGCTCAATGAA
CAGGTTCAGTTGGAGGCCCAGCTGCACCAGGCCAAGCTGCAAAAATGCCA
GGTGGAGGCTGCCATGGAAAAGGAGATATTGAGCAAGGAAAACCAGATTG
GCCTGGAGAAACTGATGCAAGCGCAACGTGCCATAAAGGATCTCACCGAT
CGGGAGCACCAACTGAAGGAGCAACTGAACATATACACCGCCAAGTACGA
TGACTTCCAGCAGTCGCTGCAGAAGTCCAATGAGGTTTTCGGCAGCTACA
AGGTGGAGCTTGAGAAGATGTCCAAGCACACTAAGAAGATCGAGAAGGAG
GCGCTGGGCTGGCGGCAAAAGTACGAGAAAGCTAATGCCATGGTGATCGA
TTTAGCCACAGAAAAGAGTCTGCAGACGCAGCACTCAGAGCGCCTGCAGA
AGCAAATACAGCAGCTGCAGAAGCTACTGCGTGCTCTACAGCTGGAGAGG
ACAACACTGCACAAGTGCCTGCGGGATCACGAGATCGAAATACCCGCCCT
GCCGCAGTTGCCTCCTGAACCAGAGCCAGTAAACGTCAAGCCAGTTAGTG
CTGAAAATGTTAAAATGGAAATGATGTCTCGCAATTGTGCGGAACTGAAG
CAAACATTGGCAAATCTGCAGAACCAAATGAAGCTGCTAACGACGAATGA
ATCGAAGACTTCCATTGAGGAAAAGAAGAAGGCCGAGGAGCAGCGTCAGG
CGAACAATGCCAAGAAGAATATACGCAAGAAGGAGAAAAAGTCCAAGGCA
AAGGCAGCAGCTGCAGCGGCGGCGGAAGCTGCAGCATCCACAACGAACGG
TGAGGCGAACGGCGTTCAGGAATCAGCCGCAACGGAGTCAAAGGCCGAGC
TAGAGGCAGCGGGTGATGCCTCAAACGTTAAGAACGAAAAGGAGCAGACC
GTTGACATTGCGACAGACACCCAGGAGCTCGTAGGTGATGGCGACGCTAT
CACCGCAAAGTCACTTGTTGATATATCCGAAGTGCCTCCCCTAATCGATG
CCAATGCCAACTAAAAGCTTTCTAGACCAT

BS06860.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5886-RA 1548 CG5886-PA 1..1548 17..1564 7740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5886-RA 1894 CG5886-RA 101..1650 16..1565 7750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25852817..25853745 637..1565 4645 100 Plus
3R 32079331 3R 25851919..25852322 88..491 2020 100 Plus
3R 32079331 3R 25852428..25852575 490..637 740 100 Plus
Y 3667352 Y 1457593..1457737 194..341 435 87.8 Plus
Y 3667352 Y 1883828..1883972 341..194 435 87.8 Minus
Y 3667352 Y 1888797..1888941 341..194 435 87.8 Minus
3R 32079331 3R 25851732..25851806 16..90 375 100 Plus
3L 28110227 3L 23315659..23315764 329..224 290 84.9 Minus
3L 28110227 3L 23315514..23315572 711..653 190 88.1 Minus
Blast to na_te.dros performed on 2014-11-27 14:29:13 has no hits.

BS06860.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:59 Download gff for BS06860.complete
Subject Subject Range Query Range Percent Splice Strand
CG5886-RA 1..1548 17..1564 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:41 Download gff for BS06860.complete
Subject Subject Range Query Range Percent Splice Strand
CG5886-RA 73..1633 7..1573 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:25 Download gff for BS06860.complete
Subject Subject Range Query Range Percent Splice Strand
CG5886-RA 102..1647 17..1562 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:00 Download gff for BS06860.complete
Subject Subject Range Query Range Percent Splice Strand
CG5886-RA 73..1633 7..1573 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:44 Download gff for BS06860.complete
Subject Subject Range Query Range Percent Splice Strand
CG5886-RA 102..1647 17..1562 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:44 Download gff for BS06860.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25852428..25852574 490..636 100 -> Plus
3R 25851733..25851804 17..88 100 -> Plus
3R 25851920..25852320 89..489 100 -> Plus
3R 25852817..25853742 637..1562 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:25 Download gff for BS06860.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21678150..21678296 490..636 100 -> Plus
arm_3R 21677455..21677526 17..88 100 -> Plus
arm_3R 21677642..21678042 89..489 100 -> Plus
arm_3R 21678539..21679464 637..1562 100   Plus

BS06860.pep Sequence

Translation from 16 to 1563

> BS06860.pep
MEKLSKAKKVAREEKQRDQKLEELVMKSLDECPSAEEKVKLLLQRHVDSE
KNVSRLTAELRVLQRQMESQQREKEQVQRDLNKSVLMRDKLQEVCREQQR
IIKSVKNESLLQIKVEEERRKESQTKFQSSLNDVQKSLAKNNEENIKLRD
YNIEMTKKLKLLAEQYQTREQHLEKLNEQVQLEAQLHQAKLQKCQVEAAM
EKEILSKENQIGLEKLMQAQRAIKDLTDREHQLKEQLNIYTAKYDDFQQS
LQKSNEVFGSYKVELEKMSKHTKKIEKEALGWRQKYEKANAMVIDLATEK
SLQTQHSERLQKQIQQLQKLLRALQLERTTLHKCLRDHEIEIPALPQLPP
EPEPVNVKPVSAENVKMEMMSRNCAELKQTLANLQNQMKLLTTNESKTSI
EEKKKAEEQRQANNAKKNIRKKEKKSKAKAAAAAAAEAAASTTNGEANGV
QESAATESKAELEAAGDASNVKNEKEQTVDIATDTQELVGDGDAITAKSL
VDISEVPPLIDANAN*

BS06860.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5886-PA 515 CG5886-PA 1..515 1..515 2534 100 Plus
CLIP-190-PN 1598 CG5020-PN 519..999 1..506 217 21 Plus
CLIP-190-PR 1601 CG5020-PR 522..1002 1..506 217 21 Plus
CLIP-190-PP 1623 CG5020-PP 544..1024 1..506 217 21 Plus
CLIP-190-PC 1652 CG5020-PC 573..1053 1..506 217 21 Plus
CLIP-190-PR 1601 CG5020-PR 280..792 7..486 203 19.9 Plus
CLIP-190-PN 1598 CG5020-PN 282..789 12..486 199 19.9 Plus
CLIP-190-PP 1623 CG5020-PP 307..814 12..486 199 19.9 Plus
CLIP-190-PN 1598 CG5020-PN 914..1394 2..484 165 18.2 Plus
CLIP-190-PR 1601 CG5020-PR 917..1397 2..484 165 18.2 Plus
CLIP-190-PP 1623 CG5020-PP 939..1419 2..484 165 18.2 Plus