Clone Sequence Records
BS06860.3prime Sequence
888 bp (822 high quality bases) assembled on 2005-12-04
> BS06860.3prime
ATGGTCTAGAAAGCTTTTAGTTGGCATTGGCATCGATTAGGGGAGGCACT
TCGGATATATCAACAAGTGACTTTGCGGTGATAGCGTCGCCATCACCTAC
GAGCTCCTGGGTGTCTGTCGCAATGTCAACGGTCTGCTCCTTTTCGTTCT
TAACGTTTGAGGCATCACCCGCTGCCTCTAGCTCGGCCTTTGACTCCGTT
GCGGCTGATTCCTGAACGCCGTTCGCCTCACCGTTCGTTGTGGATGCTGC
AGCTTCCGCCGCCGCTGCAGCTGCTGCCTTTGCCTTGGACTTTTTCTCCT
TCTTGCGTATATTCTTCTTGGCATTGTTCGCCTGACGCTGCTCCTCGGCC
TTCTTCTTTTCCTCAATGGAAGTCTTCGATTCATTCGTCGTTAGCAGCTT
CATTTGGTTCTGCAGATTTGCCAATGTTTGCTTCAGTTCCGCACAATTGC
GAGACATCATTTCCATTTTAACATTTTCAGCACTAACTGGCTTGACGTTT
ACTGGCTCTGGTTCAGGAGGCAACTGCGGCAGGGCGGGTATTTCGATCTC
GTGATCCCGCAGGCACTTGTGCAGTGTTGTCCTCTCCAGCTGTAGAGCAC
GCAGTAGCTTCTGCAGCTGCTGTATTTGCTTCTGCAGGCGCTCTGAGTGC
TGCGTCTGCAGACTCTTTTCTGTGGCTAAATCGATCACCATGGCATTAGC
TTTCTCGTACTTTTGCCGCCAGCCCAGCGCCTCCTTCTCGATCTTCTTAG
TGTGCTTGGACATCTTCTCAAGCTCCACCTTGTAGCTGCCGAAAACCTCA
TTGGACTTCTGCAGCGACTGCTGGAAGTCATCGTACTTGGCGGTGTATAT
GTTCAGTTGCTCCTTCAGTTGGTGCTCCCGATCGGTGA
BS06860.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5886-PA | 1548 | CG5886-RA | 677..1548 | 888..17 | 4360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:17:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5886-RA | 1894 | CG5886-RA | 778..1650 | 888..16 | 4365 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:17:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25852873..25853745 | 888..16 | 4365 | 100 | Minus |
Blast to na_te.dros performed 2015-02-06 12:17:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6874..6938 | 653..589 | 108 | 66.7 | Minus |
BS06860.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:20 Download gff for
BS06860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5886-PA | 678..1548 | 17..887 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:37:59 Download gff for
BS06860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5886-PA | 678..1548 | 17..887 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:42:22 Download gff for
BS06860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5886-RA | 779..1655 | 8..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:50:46 Download gff for
BS06860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5886-RA | 779..1655 | 8..887 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:50:46 Download gff for
BS06860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25852874..25853750 | 8..887 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:42:22 Download gff for
BS06860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21678596..21679472 | 8..887 | 99 | | Minus |
BS06860.5prime Sequence
842 bp (708 high quality bases) assembled on 2005-12-04
> BS06860.5prime
GAAGTTATCAGTCGACATGGAGAAGCTAAGCAAGGCGAAAAAAGTGGCGC
GCGAGGAGAAGCAGCGCGACCAGAAGTTGGAGGAGTTGGTCATGAAATCC
CTTGACGAATGCCCCTCCGCCGAGGAGAAGGTGAAACTTCTGCTGCAACG
CCATGTGGACAGCGAAAAGAATGTAAGCCGGCTGACGGCGGAACTGCGTG
TCCTGCAGCGCCAAATGGAGTCGCAGCAGAGGGAGAAGGAGCAGGTTCAG
CGGGATCTTAACAAGAGCGTCCTGATGCGAGACAAGCTGCAGGAGGTGTG
CCGCGAACAGCAGCGCATCATAAAGTCCGTAAAGAACGAGAGCCTGCTGC
AAATCAAAGTGGAGGAGGAGCGGCGCAAGGAGAGCCAGACAAAGTTCCAA
AGCTCCCTGAACGATGTCCAAAAGTCGCTGGCCAAGAACAACGAGGAGAA
CATCAAGCTGCGCGATTACAACATCGAGATGACCAAGAAGTTAAAGCTGC
TGGCCGAGCAGTACCAAACGAGGGAGCAGCACCTGGAGAAGCTCAATGAA
CAGGTTCAGTTGGAGGCCCAGCTGCACCAGGCCAAGCTGCAAAAATGCCA
GGTGGAGGCTGCCATGGAAAAGGAGATATTGAGCAAGGAAAACCAGATTG
GCCTGGAGAAACTGATGCAAGCGCAACGTGCCATAAAGGATCTCACCGAT
CGGGAGCACCAACTGAAGGAGCAACTGAACATATACACCGCCAAGTACGA
TGACTTCCAGCAGTCGCTGCAGAAGTCCAATGAGGTTTTCGGCAGCTACA
AGGTGGAGCTTGAGAAGATGTCCAAGCACACTAAGAAGATCG
BS06860.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5886-PA | 1548 | CG5886-RA | 1..826 | 17..842 | 4130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:06:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5886-RA | 1894 | CG5886-RA | 101..927 | 16..842 | 4135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:06:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25851919..25852322 | 88..491 | 2020 | 100 | Plus |
3R | 32079331 | 3R | 25852817..25853022 | 637..842 | 1030 | 100 | Plus |
3R | 32079331 | 3R | 25852428..25852575 | 490..637 | 740 | 100 | Plus |
Y | 3667352 | Y | 1457593..1457737 | 194..341 | 435 | 87.8 | Plus |
Y | 3667352 | Y | 1883828..1883972 | 341..194 | 435 | 87.8 | Minus |
Y | 3667352 | Y | 1888797..1888941 | 341..194 | 435 | 87.8 | Minus |
3R | 32079331 | 3R | 25851732..25851806 | 16..90 | 375 | 100 | Plus |
3L | 28110227 | 3L | 23315659..23315764 | 329..224 | 290 | 84.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:06:10 has no hits.
BS06860.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:21 Download gff for
BS06860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5886-PA | 1..826 | 17..842 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:01 Download gff for
BS06860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5886-PA | 1..826 | 17..842 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:13:06 Download gff for
BS06860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5886-RA | 95..927 | 7..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:39:47 Download gff for
BS06860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5886-RA | 95..927 | 7..842 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:39:47 Download gff for
BS06860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25852817..25853022 | 637..842 | 100 | | Plus |
3R | 25851726..25851804 | 7..88 | 95 | -> | Plus |
3R | 25851920..25852320 | 89..489 | 100 | -> | Plus |
3R | 25852428..25852574 | 490..636 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:13:06 Download gff for
BS06860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21677448..21677526 | 7..88 | 95 | -> | Plus |
arm_3R | 21677642..21678042 | 89..489 | 100 | -> | Plus |
arm_3R | 21678150..21678296 | 490..636 | 100 | -> | Plus |
arm_3R | 21678539..21678744 | 637..842 | 100 | | Plus |
BS06860.complete Sequence
1580 bp (1580 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635647
> BS06860.complete
GAAGTTATCAGTCGACATGGAGAAGCTAAGCAAGGCGAAAAAAGTGGCGC
GCGAGGAGAAGCAGCGCGACCAGAAGTTGGAGGAGTTGGTCATGAAATCC
CTTGACGAATGCCCCTCCGCCGAGGAGAAGGTGAAACTTCTGCTGCAACG
CCATGTGGACAGCGAAAAGAATGTAAGCCGGCTGACGGCGGAACTGCGTG
TCCTGCAGCGCCAAATGGAGTCGCAGCAGAGGGAGAAGGAGCAGGTTCAG
CGGGATCTTAACAAGAGCGTCCTGATGCGAGACAAGCTGCAGGAGGTGTG
CCGCGAACAGCAGCGCATCATAAAGTCCGTAAAGAACGAGAGCCTGCTGC
AAATCAAAGTGGAGGAGGAGCGGCGCAAGGAGAGCCAGACAAAGTTCCAA
AGCTCCCTGAACGATGTCCAAAAGTCGCTGGCCAAGAACAACGAGGAGAA
CATCAAGCTGCGCGATTACAACATCGAGATGACCAAGAAGTTAAAGCTGC
TGGCCGAGCAGTACCAAACGAGGGAGCAGCACCTGGAGAAGCTCAATGAA
CAGGTTCAGTTGGAGGCCCAGCTGCACCAGGCCAAGCTGCAAAAATGCCA
GGTGGAGGCTGCCATGGAAAAGGAGATATTGAGCAAGGAAAACCAGATTG
GCCTGGAGAAACTGATGCAAGCGCAACGTGCCATAAAGGATCTCACCGAT
CGGGAGCACCAACTGAAGGAGCAACTGAACATATACACCGCCAAGTACGA
TGACTTCCAGCAGTCGCTGCAGAAGTCCAATGAGGTTTTCGGCAGCTACA
AGGTGGAGCTTGAGAAGATGTCCAAGCACACTAAGAAGATCGAGAAGGAG
GCGCTGGGCTGGCGGCAAAAGTACGAGAAAGCTAATGCCATGGTGATCGA
TTTAGCCACAGAAAAGAGTCTGCAGACGCAGCACTCAGAGCGCCTGCAGA
AGCAAATACAGCAGCTGCAGAAGCTACTGCGTGCTCTACAGCTGGAGAGG
ACAACACTGCACAAGTGCCTGCGGGATCACGAGATCGAAATACCCGCCCT
GCCGCAGTTGCCTCCTGAACCAGAGCCAGTAAACGTCAAGCCAGTTAGTG
CTGAAAATGTTAAAATGGAAATGATGTCTCGCAATTGTGCGGAACTGAAG
CAAACATTGGCAAATCTGCAGAACCAAATGAAGCTGCTAACGACGAATGA
ATCGAAGACTTCCATTGAGGAAAAGAAGAAGGCCGAGGAGCAGCGTCAGG
CGAACAATGCCAAGAAGAATATACGCAAGAAGGAGAAAAAGTCCAAGGCA
AAGGCAGCAGCTGCAGCGGCGGCGGAAGCTGCAGCATCCACAACGAACGG
TGAGGCGAACGGCGTTCAGGAATCAGCCGCAACGGAGTCAAAGGCCGAGC
TAGAGGCAGCGGGTGATGCCTCAAACGTTAAGAACGAAAAGGAGCAGACC
GTTGACATTGCGACAGACACCCAGGAGCTCGTAGGTGATGGCGACGCTAT
CACCGCAAAGTCACTTGTTGATATATCCGAAGTGCCTCCCCTAATCGATG
CCAATGCCAACTAAAAGCTTTCTAGACCAT
BS06860.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:29:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5886-RA | 1548 | CG5886-PA | 1..1548 | 17..1564 | 7740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5886-RA | 1894 | CG5886-RA | 101..1650 | 16..1565 | 7750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25852817..25853745 | 637..1565 | 4645 | 100 | Plus |
3R | 32079331 | 3R | 25851919..25852322 | 88..491 | 2020 | 100 | Plus |
3R | 32079331 | 3R | 25852428..25852575 | 490..637 | 740 | 100 | Plus |
Y | 3667352 | Y | 1457593..1457737 | 194..341 | 435 | 87.8 | Plus |
Y | 3667352 | Y | 1883828..1883972 | 341..194 | 435 | 87.8 | Minus |
Y | 3667352 | Y | 1888797..1888941 | 341..194 | 435 | 87.8 | Minus |
3R | 32079331 | 3R | 25851732..25851806 | 16..90 | 375 | 100 | Plus |
3L | 28110227 | 3L | 23315659..23315764 | 329..224 | 290 | 84.9 | Minus |
3L | 28110227 | 3L | 23315514..23315572 | 711..653 | 190 | 88.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:29:13 has no hits.
BS06860.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:59 Download gff for
BS06860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5886-RA | 1..1548 | 17..1564 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:41 Download gff for
BS06860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5886-RA | 73..1633 | 7..1573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:25 Download gff for
BS06860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5886-RA | 102..1647 | 17..1562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:00 Download gff for
BS06860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5886-RA | 73..1633 | 7..1573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:44 Download gff for
BS06860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5886-RA | 102..1647 | 17..1562 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:44 Download gff for
BS06860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25852428..25852574 | 490..636 | 100 | -> | Plus |
3R | 25851733..25851804 | 17..88 | 100 | -> | Plus |
3R | 25851920..25852320 | 89..489 | 100 | -> | Plus |
3R | 25852817..25853742 | 637..1562 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:25 Download gff for
BS06860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21678150..21678296 | 490..636 | 100 | -> | Plus |
arm_3R | 21677455..21677526 | 17..88 | 100 | -> | Plus |
arm_3R | 21677642..21678042 | 89..489 | 100 | -> | Plus |
arm_3R | 21678539..21679464 | 637..1562 | 100 | | Plus |
BS06860.pep Sequence
Translation from 16 to 1563
> BS06860.pep
MEKLSKAKKVAREEKQRDQKLEELVMKSLDECPSAEEKVKLLLQRHVDSE
KNVSRLTAELRVLQRQMESQQREKEQVQRDLNKSVLMRDKLQEVCREQQR
IIKSVKNESLLQIKVEEERRKESQTKFQSSLNDVQKSLAKNNEENIKLRD
YNIEMTKKLKLLAEQYQTREQHLEKLNEQVQLEAQLHQAKLQKCQVEAAM
EKEILSKENQIGLEKLMQAQRAIKDLTDREHQLKEQLNIYTAKYDDFQQS
LQKSNEVFGSYKVELEKMSKHTKKIEKEALGWRQKYEKANAMVIDLATEK
SLQTQHSERLQKQIQQLQKLLRALQLERTTLHKCLRDHEIEIPALPQLPP
EPEPVNVKPVSAENVKMEMMSRNCAELKQTLANLQNQMKLLTTNESKTSI
EEKKKAEEQRQANNAKKNIRKKEKKSKAKAAAAAAAEAAASTTNGEANGV
QESAATESKAELEAAGDASNVKNEKEQTVDIATDTQELVGDGDAITAKSL
VDISEVPPLIDANAN*
BS06860.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5886-PA | 515 | CG5886-PA | 1..515 | 1..515 | 2534 | 100 | Plus |
CLIP-190-PN | 1598 | CG5020-PN | 519..999 | 1..506 | 217 | 21 | Plus |
CLIP-190-PR | 1601 | CG5020-PR | 522..1002 | 1..506 | 217 | 21 | Plus |
CLIP-190-PP | 1623 | CG5020-PP | 544..1024 | 1..506 | 217 | 21 | Plus |
CLIP-190-PC | 1652 | CG5020-PC | 573..1053 | 1..506 | 217 | 21 | Plus |
CLIP-190-PR | 1601 | CG5020-PR | 280..792 | 7..486 | 203 | 19.9 | Plus |
CLIP-190-PN | 1598 | CG5020-PN | 282..789 | 12..486 | 199 | 19.9 | Plus |
CLIP-190-PP | 1623 | CG5020-PP | 307..814 | 12..486 | 199 | 19.9 | Plus |
CLIP-190-PN | 1598 | CG5020-PN | 914..1394 | 2..484 | 165 | 18.2 | Plus |
CLIP-190-PR | 1601 | CG5020-PR | 917..1397 | 2..484 | 165 | 18.2 | Plus |
CLIP-190-PP | 1623 | CG5020-PP | 939..1419 | 2..484 | 165 | 18.2 | Plus |