Clone BS06861 Report

Search the DGRC for BS06861

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:68
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptCG3332-RA
Protein status:BS06861.pep: full length peptide match
Sequenced Size:2426

Clone Sequence Records

BS06861.3prime Sequence

814 bp (813 high quality bases) assembled on 2005-12-04

> BS06861.3prime
ATGGTCTAGAAAGCTTCTAATGCGCCTTGGCCTTGTACGTGATTTTCCAC
ACCTCGAAGAGGCAAATGGTCGAATGGAAGCGGTAGAAAATGGCCAGCGG
CATGGAGATGTGGGTGATGATCGTCCAGCCCCAGACTCCAAAGAACTCCA
AATGGCTCTCCCTGAAGACGGCTCGTCCCTTGATCAGGGTGTTTACGAAC
CAGATGGCAATGTTGGCCACCAGCAAGAACGTGATGATCTCCCTGCCGGG
CTTCCTTCTCACCTGATTGGTGCCCCTGCAGCGCCGATGGCTGGAATGCA
GGATGAACATGGTCTGCAGCGAGGTCTGCACCACTCCAAAGACCTCCGCT
ATAATGCCCTCCACCCGGTCGGGCACTGTGTCCCATTTGGCGAAGTAACT
GCCCAGGATGCTGAACATTCCGTACAGGTACACCCCGGTCTGGGCCACAA
TCAGCAGGAGATTGTCCAGATCCATCGAGTGGTGCTCGTCGCTGGTGTTC
TTAATGTAGCGCAGATCGCGCATGAGGATCATGCCCGTTATCACAGCCGC
TGCGCACATAAAGTACATGAAGGTCTCCCACAGAGTGACCTCCTGTGTGG
CCACCAGTTCATAGCCCGGCTGGGTGTACAGCACAAAGTACATGATCATC
GAGATAATGGTCATGACTATGATCAGGATCCCGAAGAAGAGTCCCTTGTG
CGACTGGGAACAGTCCACGGAGAAGTGATGGGCAGGCTTGGCAGCAGCGG
GCTTGACGGAATTCTTGCGCGTCTTGTCGATGTCCGGAATCGATTTGACC
GTCTTCCACATCTC

BS06861.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG3332-PB 1890 CG3332-RB 1093..1890 814..17 3990 100 Minus
CG3332-PA 2394 CG3332-RA 1597..2394 814..17 3990 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3332-RD 2206 CG3332-RD 1254..2051 814..17 3990 100 Minus
CG3332-RC 2653 CG3332-RC 1701..2498 814..17 3990 100 Minus
CG3332-RA 2656 CG3332-RA 1704..2501 814..17 3990 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3275955..3276473 17..535 2595 100 Plus
2L 23513712 2L 3276532..3276812 534..814 1405 100 Plus
X 23542271 X 5653915..5654003 45..133 205 82 Plus
Blast to na_te.dros performed on 2015-02-01 08:21:26 has no hits.

BS06861.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:22 Download gff for BS06861.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3332-PB 1093..1890 17..814 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:02 Download gff for BS06861.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3332-PA 1597..2394 17..814 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:23:36 Download gff for BS06861.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3332-RB 1264..2065 13..814 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:51:10 Download gff for BS06861.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3332-RA 1704..2505 13..814 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:51:10 Download gff for BS06861.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3275951..3276472 13..534 99 <- Plus
2L 3276533..3276812 535..814 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:23:36 Download gff for BS06861.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3275951..3276472 13..534 99 <- Plus
arm_2L 3276533..3276812 535..814 100   Plus

BS06861.5prime Sequence

842 bp (817 high quality bases) assembled on 2005-12-04

> BS06861.5prime
GAAGTTATCAGTCGACATGTCGCTAATTAACTTGAAATCCAAAGACATGT
ACGATGAACCCATTAATCTGTGGAGGACCAAACAGCGCGTCCATTACCAC
CACGATGTGATATCGAAGGGAAATGACAGCCACAGATCCTCCGATGCCTG
CGAATACATAACCATAAGTGCGCCAAAGAAGTCGGGTTCGTTCTCGAGAT
CCCCGCCAAGCTCGCTGCCCACCTCGGTACCTGGTACACCTCGTCACTCT
GTGGCCGCCACCTCGAATCAAGTAATCCGTTACGCCCGAACGTCCTGTGA
TCACTGCGGACACCACAGCATTCCGGTCATGTCGCCGCATCCCATCTCCC
CGCTGGCCAAGTCCCAGACCAACCTGGATCTCGTGGAGCACGGCAGCCAG
CGGCAGGCCCTCCTCCCGCTTCCCACCGTCGGGATGCACCACGAAGACTC
CGCCTGCACCTTGCAGGTGTCACGCAGGCCATCGCTGCTCCTCCAAGAGA
TCCTCACCCAGCGACCGCCGCTCTTTGGGCGCAGGGACGGCAACGGTTTC
CTGTCGCCGAGGACTGCCAAAAATGGTAACCTGCAGGGAACAGCGAGCGG
CAGCACAGCGACCATAAATTTCCAGAGTGGAGCCACCAGTGCCAGGAATG
GATCCACGGCCTTTTTCGACAATGGGGCCAAGAGCTTTCAGGCCAAGCAA
CAAAAGGATAAGAACCGACGCACTGGCAACGATGCCATAAGTTCAGCACT
GTCGGCAACCTATTGCAAACTGTTGGTACTGCTAGGCGTTTGTCTGCCGA
TCACGGAAGTTATATCCGATCAGATACCGACCTATGTGTACC

BS06861.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG3332-PA 2394 CG3332-RA 1..826 17..842 4105 99.8 Plus
CG3332-PB 1890 CG3332-RB 56..322 576..842 1335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG3332-RA 2656 CG3332-RA 108..933 17..842 4115 99.9 Plus
CG3332-RC 2653 CG3332-RC 108..930 17..842 4060 99.5 Plus
CG3332-RD 2206 CG3332-RD 212..483 571..842 1345 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:42:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3278157..3278606 576..127 2235 99.8 Minus
2L 23513712 2L 3277829..3277982 729..576 770 100 Minus
2L 23513712 2L 3277648..3277760 842..730 565 100 Minus
2L 23513712 2L 3279254..3279363 126..17 550 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:43:02 has no hits.

BS06861.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:23 Download gff for BS06861.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3332-PA 1..826 17..842 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:04 Download gff for BS06861.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3332-PA 1..826 17..842 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:02:23 Download gff for BS06861.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3332-RA 105..933 14..842 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:15:14 Download gff for BS06861.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3332-RA 105..933 14..842 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:15:14 Download gff for BS06861.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3277648..3277760 730..842 100 <- Minus
2L 3277829..3277981 577..729 100 <- Minus
2L 3278157..3278606 127..576 99 <- Minus
2L 3279254..3279366 14..126 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:02:23 Download gff for BS06861.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3277648..3277760 730..842 100 <- Minus
arm_2L 3277829..3277981 577..729 100 <- Minus
arm_2L 3278157..3278606 127..576 99 <- Minus
arm_2L 3279254..3279366 14..126 99   Minus

BS06861.complete Sequence

2426 bp assembled on 2008-08-14

> BS06861.complete
GAAGTTATCAGTCGACATGTCGCTAATTAACTTGAAATCCAAAGACATGT
ACGATGAACCCATTAATCTGTGGAGGACCAAACAGCGCGTCCATTACCAC
CACGATGTGATATCGAAGGGAAATGACAGCCACAGATCCTCCGATGCCTG
CGAATACATAACCATAAGTGCGCCAAAGAAGTCGGGTTCGTTCTCGAGAT
CCCCGCCAAGCTCGCTGCCCACCTCGGTACCTGGTACACCTCGTCACTCT
GTGGCCGCCACCTCGAATCAAGTAATCCGTTACGCCCGAACGTCCTGTGA
TCACTGCGGACACCACAGCATTCCGGTCATGTCGCCGCATCCCATCTCCC
CGCTGGCCAAGTCCCAGACCAACCTGGATCTCGTGGAGCACGGCAGCCAG
CGGCAGGCCCTCCTCCCGCTTCCCACCGTCGGGATGCACCACGAAGACTC
CGCCTGCACCTTGCAGGTGTCACGCAGGCCATCGCTGCTCCTCCAAGAGA
TCCTCACCCAGCGACCGCCGCTCTTTGGGCGCAGGGACGGCAACGGTTTC
CTGTCGCCGAGGACTGCCAAAAATGGTAACCTGCAGGGAACAGCGAGCGG
CAGCACAGCGACCATAAATTTCCAGAGTGGAGCCACCAGTGCCAGGAATG
GATCCACGGCCTTTTTCGACAATGGGGCCAAGAGCTTTCAGGCCAAGCAA
CAAAAGGATAAGAACCGACGCACTGGCAACGATGCCATAAGTTCAGCACT
GTCGGCAACCTATTGCAAACTGTTGGTACTGCTAGGCGTTTGTCTGCCGA
TCACGGAAGTTATATCCGATCAGATACCGACCTATGTGTACCAGGGATTC
TACGTATACCTCTATGTGGGCAGCATACTCTTTGTGATCTTTCTGTACAT
TAGTGCCTTCCGTAATCGATCGCTCTTCAATGCCTTAAAGGACTATCACG
AAAAGAACAGCAATGTGCATCTGAAGCACAAGGTAACCCATTTTGGCAGC
TTTTACTTGAGAGTGGGAGCCATCGCCTTCGCCATTGGAACTATGGTGTA
TTCGGGCCTGGAGTTTGGCCAGTTCTTCGAGCTGAATGGCCATCCCGGAT
GCCGGGATGTCTTCGTGGCCATTACACCCATCTGCCGGATGGTCCTGTGC
ATCGCCCAGGTGCAGTTCATCTTCTTGAACACCACCTACATGGACATGGC
CCGGCACAAGGTGACCTCCCGCTTCGGACTCATGCACATGGTGGCCACCA
ACTTGTGTGAGTGGCTGTACGTCCTGGTGGAGGAGACCAAGCACGAAATT
TTCCACATCAGCCAGCACGAAGTGGATCCCGCCCACGACCTGGTCATTCA
TAATAGCTCCATGAGTAGAACGGACTGGGCCGCTGTCAATGAGTCCCTGC
ATCAGCATCATCATCATCATGCCCTTAATAACACCCTGGTGGCCAATGTG
AGTTCTGTGATTGTGAATATGACCATTACTCCGTCGCCCACGCCGGCTGC
CTTCAGCGGCTGCTCCCGCACCACGATTATGGGTGCTCTGGTGCAGCAAC
TTTCGCCATTCCTGTTCCCCTGCACCATCGAGTACTCCCTCATATGCGCC
GTAATCCTCTTCGAGATGTGGAAGACGGTCAAATCGATTCCGGACATCGA
CAAGACGCGCAAGAATTCCGTCAAGCCCGCTGCTGCCAAGCCTGCCCATC
ACTTCTCCGTGGACTGTTCCCAGTCGCACAAGGGACTCTTCTTCGGGATC
CTGATCATAGTCATGACCATTATCTCGATGATCATGTACTTTGTGCTGTA
CACCCAGCCGGGCTATGAACTGGTGGCCACACAGGAGGTCACTCTGTGGG
AGACCTTCATGTACTTTATGTGCGCAGCGGCTGTGATAACGGGCATGATC
CTCATGCGCGATCTGCGCTACATTAAGAACACCAGCGACGAGCACCACTC
GATGGATCTGGACAATCTCCTGCTGATTGTGGCCCAGACCGGGGTGTACC
TGTACGGAATGTTCAGCATCCTGGGCAGTTACTTCGCCAAATGGGACACA
GTGCCCGACCGGGTGGAGGGCATTATAGCGGAGGTCTTTGGAGTGGTGCA
GACCTCGCTGCAGACCATGTTCATCCTGCATTCCAGCCATCGGCGCTGCA
GGGGCACCAATCAGGTGAGAAGGAAGCCCGGCAGGGAGATCATCACGTTC
TTGCTGGTGGCCAACATTGCCATCTGGTTCGTAAACACCCTGATCAAGGG
ACGAGCCGTCTTCAGGGAGAGCCATTTGGAGTTCTTTGGAGTCTGGGGCT
GGACGATCATCACCCACATCTCCATGCCGCTGGCCATTTTCTACCGCTTC
CATTCGACCATTTGCCTCTTCGAGGTGTGGAAAATCACGTACAAGGCCAA
GGCGCATTAGAAGCTTTCTAGACCAT

BS06861.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG3332-RA 2394 CG3332-PA 1..2394 17..2410 11955 100 Plus
CG3332-RC 2391 CG3332-PC 1..2391 17..2410 11875 99.8 Plus
CG3332-RD 1944 CG3332-PD 105..1944 571..2410 9185 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG3332-RA 2656 CG3332-RA 108..2501 17..2410 11955 100 Plus
CG3332-RC 2653 CG3332-RC 108..2498 17..2410 11875 99.8 Plus
CG3332-RD 2206 CG3332-RD 212..2051 571..2410 9185 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3276532..3277477 1893..948 4730 100 Minus
2L 23513712 2L 3275955..3276473 2410..1892 2595 100 Minus
2L 23513712 2L 3278157..3278606 576..127 2235 99.8 Minus
2L 23513712 2L 3277543..3277760 947..730 1090 100 Minus
2L 23513712 2L 3277829..3277982 729..576 770 100 Minus
2L 23513712 2L 3279254..3279363 126..17 550 100 Minus
X 23542271 X 5653915..5654003 2382..2294 205 82 Minus
Blast to na_te.dros performed on 2014-11-27 10:43:38 has no hits.

BS06861.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:48:47 Download gff for BS06861.complete
Subject Subject Range Query Range Percent Splice Strand
CG3332-RA 92..2492 14..2414 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:20:31 Download gff for BS06861.complete
Subject Subject Range Query Range Percent Splice Strand
CG3332-RA 108..2501 17..2410 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:54:21 Download gff for BS06861.complete
Subject Subject Range Query Range Percent Splice Strand
CG3332-RA 95..2488 17..2410 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:16 Download gff for BS06861.complete
Subject Subject Range Query Range Percent Splice Strand
CG3332-RA 108..2501 17..2410 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:16 Download gff for BS06861.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3277543..3277760 730..947 100 <- Minus
2L 3277829..3277981 577..729 100 <- Minus
2L 3275955..3276472 1893..2410 100 <- Minus
2L 3276533..3277477 948..1892 100 <- Minus
2L 3278157..3278606 127..576 99 <- Minus
2L 3279254..3279363 17..126 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:20:31 Download gff for BS06861.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3275955..3276472 1893..2410 100 <- Minus
arm_2L 3276533..3277477 948..1892 100 <- Minus
arm_2L 3277543..3277760 730..947 100 <- Minus
arm_2L 3277829..3277981 577..729 100 <- Minus
arm_2L 3278157..3278606 127..576 99 <- Minus
arm_2L 3279254..3279363 17..126 100   Minus

BS06861.pep Sequence

Translation from 16 to 2409

> BS06861.pep
MSLINLKSKDMYDEPINLWRTKQRVHYHHDVISKGNDSHRSSDACEYITI
SAPKKSGSFSRSPPSSLPTSVPGTPRHSVAATSNQVIRYARTSCDHCGHH
SIPVMSPHPISPLAKSQTNLDLVEHGSQRQALLPLPTVGMHHEDSACTLQ
VSRRPSLLLQEILTQRPPLFGRRDGNGFLSPRTAKNGNLQGTASGSTATI
NFQSGATSARNGSTAFFDNGAKSFQAKQQKDKNRRTGNDAISSALSATYC
KLLVLLGVCLPITEVISDQIPTYVYQGFYVYLYVGSILFVIFLYISAFRN
RSLFNALKDYHEKNSNVHLKHKVTHFGSFYLRVGAIAFAIGTMVYSGLEF
GQFFELNGHPGCRDVFVAITPICRMVLCIAQVQFIFLNTTYMDMARHKVT
SRFGLMHMVATNLCEWLYVLVEETKHEIFHISQHEVDPAHDLVIHNSSMS
RTDWAAVNESLHQHHHHHALNNTLVANVSSVIVNMTITPSPTPAAFSGCS
RTTIMGALVQQLSPFLFPCTIEYSLICAVILFEMWKTVKSIPDIDKTRKN
SVKPAAAKPAHHFSVDCSQSHKGLFFGILIIVMTIISMIMYFVLYTQPGY
ELVATQEVTLWETFMYFMCAAAVITGMILMRDLRYIKNTSDEHHSMDLDN
LLLIVAQTGVYLYGMFSILGSYFAKWDTVPDRVEGIIAEVFGVVQTSLQT
MFILHSSHRRCRGTNQVRRKPGREIITFLLVANIAIWFVNTLIKGRAVFR
ESHLEFFGVWGWTIITHISMPLAIFYRFHSTICLFEVWKITYKAKAH*

BS06861.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:09:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3332-PA 797 CG3332-PA 1..797 1..797 4195 100 Plus
CG3332-PC 796 CG3332-PC 1..796 1..797 4179 99.9 Plus
CG3332-PD 647 CG3332-PD 36..647 186..797 3206 99.8 Plus
CG3332-PB 629 CG3332-PB 4..629 172..797 3203 97.9 Plus
CG42265-PE 1455 CG42265-PE 885..1451 234..795 1168 41.2 Plus
CG3332-PD 647 CG3332-PD 1..51 1..51 206 76.5 Plus