Clone Sequence Records
BS06861.3prime Sequence
814 bp (813 high quality bases) assembled on 2005-12-04
> BS06861.3prime
ATGGTCTAGAAAGCTTCTAATGCGCCTTGGCCTTGTACGTGATTTTCCAC
ACCTCGAAGAGGCAAATGGTCGAATGGAAGCGGTAGAAAATGGCCAGCGG
CATGGAGATGTGGGTGATGATCGTCCAGCCCCAGACTCCAAAGAACTCCA
AATGGCTCTCCCTGAAGACGGCTCGTCCCTTGATCAGGGTGTTTACGAAC
CAGATGGCAATGTTGGCCACCAGCAAGAACGTGATGATCTCCCTGCCGGG
CTTCCTTCTCACCTGATTGGTGCCCCTGCAGCGCCGATGGCTGGAATGCA
GGATGAACATGGTCTGCAGCGAGGTCTGCACCACTCCAAAGACCTCCGCT
ATAATGCCCTCCACCCGGTCGGGCACTGTGTCCCATTTGGCGAAGTAACT
GCCCAGGATGCTGAACATTCCGTACAGGTACACCCCGGTCTGGGCCACAA
TCAGCAGGAGATTGTCCAGATCCATCGAGTGGTGCTCGTCGCTGGTGTTC
TTAATGTAGCGCAGATCGCGCATGAGGATCATGCCCGTTATCACAGCCGC
TGCGCACATAAAGTACATGAAGGTCTCCCACAGAGTGACCTCCTGTGTGG
CCACCAGTTCATAGCCCGGCTGGGTGTACAGCACAAAGTACATGATCATC
GAGATAATGGTCATGACTATGATCAGGATCCCGAAGAAGAGTCCCTTGTG
CGACTGGGAACAGTCCACGGAGAAGTGATGGGCAGGCTTGGCAGCAGCGG
GCTTGACGGAATTCTTGCGCGTCTTGTCGATGTCCGGAATCGATTTGACC
GTCTTCCACATCTC
BS06861.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3332-PB | 1890 | CG3332-RB | 1093..1890 | 814..17 | 3990 | 100 | Minus |
CG3332-PA | 2394 | CG3332-RA | 1597..2394 | 814..17 | 3990 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:21:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3332-RD | 2206 | CG3332-RD | 1254..2051 | 814..17 | 3990 | 100 | Minus |
CG3332-RC | 2653 | CG3332-RC | 1701..2498 | 814..17 | 3990 | 100 | Minus |
CG3332-RA | 2656 | CG3332-RA | 1704..2501 | 814..17 | 3990 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:21:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3275955..3276473 | 17..535 | 2595 | 100 | Plus |
2L | 23513712 | 2L | 3276532..3276812 | 534..814 | 1405 | 100 | Plus |
X | 23542271 | X | 5653915..5654003 | 45..133 | 205 | 82 | Plus |
Blast to na_te.dros performed on 2015-02-01 08:21:26 has no hits.
BS06861.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:22 Download gff for
BS06861.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3332-PB | 1093..1890 | 17..814 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:02 Download gff for
BS06861.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3332-PA | 1597..2394 | 17..814 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:23:36 Download gff for
BS06861.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3332-RB | 1264..2065 | 13..814 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:51:10 Download gff for
BS06861.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3332-RA | 1704..2505 | 13..814 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:51:10 Download gff for
BS06861.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3275951..3276472 | 13..534 | 99 | <- | Plus |
2L | 3276533..3276812 | 535..814 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:23:36 Download gff for
BS06861.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3275951..3276472 | 13..534 | 99 | <- | Plus |
arm_2L | 3276533..3276812 | 535..814 | 100 | | Plus |
BS06861.5prime Sequence
842 bp (817 high quality bases) assembled on 2005-12-04
> BS06861.5prime
GAAGTTATCAGTCGACATGTCGCTAATTAACTTGAAATCCAAAGACATGT
ACGATGAACCCATTAATCTGTGGAGGACCAAACAGCGCGTCCATTACCAC
CACGATGTGATATCGAAGGGAAATGACAGCCACAGATCCTCCGATGCCTG
CGAATACATAACCATAAGTGCGCCAAAGAAGTCGGGTTCGTTCTCGAGAT
CCCCGCCAAGCTCGCTGCCCACCTCGGTACCTGGTACACCTCGTCACTCT
GTGGCCGCCACCTCGAATCAAGTAATCCGTTACGCCCGAACGTCCTGTGA
TCACTGCGGACACCACAGCATTCCGGTCATGTCGCCGCATCCCATCTCCC
CGCTGGCCAAGTCCCAGACCAACCTGGATCTCGTGGAGCACGGCAGCCAG
CGGCAGGCCCTCCTCCCGCTTCCCACCGTCGGGATGCACCACGAAGACTC
CGCCTGCACCTTGCAGGTGTCACGCAGGCCATCGCTGCTCCTCCAAGAGA
TCCTCACCCAGCGACCGCCGCTCTTTGGGCGCAGGGACGGCAACGGTTTC
CTGTCGCCGAGGACTGCCAAAAATGGTAACCTGCAGGGAACAGCGAGCGG
CAGCACAGCGACCATAAATTTCCAGAGTGGAGCCACCAGTGCCAGGAATG
GATCCACGGCCTTTTTCGACAATGGGGCCAAGAGCTTTCAGGCCAAGCAA
CAAAAGGATAAGAACCGACGCACTGGCAACGATGCCATAAGTTCAGCACT
GTCGGCAACCTATTGCAAACTGTTGGTACTGCTAGGCGTTTGTCTGCCGA
TCACGGAAGTTATATCCGATCAGATACCGACCTATGTGTACC
BS06861.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3332-PA | 2394 | CG3332-RA | 1..826 | 17..842 | 4105 | 99.8 | Plus |
CG3332-PB | 1890 | CG3332-RB | 56..322 | 576..842 | 1335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:43:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3332-RA | 2656 | CG3332-RA | 108..933 | 17..842 | 4115 | 99.9 | Plus |
CG3332-RC | 2653 | CG3332-RC | 108..930 | 17..842 | 4060 | 99.5 | Plus |
CG3332-RD | 2206 | CG3332-RD | 212..483 | 571..842 | 1345 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:42:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3278157..3278606 | 576..127 | 2235 | 99.8 | Minus |
2L | 23513712 | 2L | 3277829..3277982 | 729..576 | 770 | 100 | Minus |
2L | 23513712 | 2L | 3277648..3277760 | 842..730 | 565 | 100 | Minus |
2L | 23513712 | 2L | 3279254..3279363 | 126..17 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:43:02 has no hits.
BS06861.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:23 Download gff for
BS06861.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3332-PA | 1..826 | 17..842 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:04 Download gff for
BS06861.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3332-PA | 1..826 | 17..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:02:23 Download gff for
BS06861.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3332-RA | 105..933 | 14..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:15:14 Download gff for
BS06861.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3332-RA | 105..933 | 14..842 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:15:14 Download gff for
BS06861.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3277648..3277760 | 730..842 | 100 | <- | Minus |
2L | 3277829..3277981 | 577..729 | 100 | <- | Minus |
2L | 3278157..3278606 | 127..576 | 99 | <- | Minus |
2L | 3279254..3279366 | 14..126 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:02:23 Download gff for
BS06861.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3277648..3277760 | 730..842 | 100 | <- | Minus |
arm_2L | 3277829..3277981 | 577..729 | 100 | <- | Minus |
arm_2L | 3278157..3278606 | 127..576 | 99 | <- | Minus |
arm_2L | 3279254..3279366 | 14..126 | 99 | | Minus |
BS06861.complete Sequence
2426 bp assembled on 2008-08-14
> BS06861.complete
GAAGTTATCAGTCGACATGTCGCTAATTAACTTGAAATCCAAAGACATGT
ACGATGAACCCATTAATCTGTGGAGGACCAAACAGCGCGTCCATTACCAC
CACGATGTGATATCGAAGGGAAATGACAGCCACAGATCCTCCGATGCCTG
CGAATACATAACCATAAGTGCGCCAAAGAAGTCGGGTTCGTTCTCGAGAT
CCCCGCCAAGCTCGCTGCCCACCTCGGTACCTGGTACACCTCGTCACTCT
GTGGCCGCCACCTCGAATCAAGTAATCCGTTACGCCCGAACGTCCTGTGA
TCACTGCGGACACCACAGCATTCCGGTCATGTCGCCGCATCCCATCTCCC
CGCTGGCCAAGTCCCAGACCAACCTGGATCTCGTGGAGCACGGCAGCCAG
CGGCAGGCCCTCCTCCCGCTTCCCACCGTCGGGATGCACCACGAAGACTC
CGCCTGCACCTTGCAGGTGTCACGCAGGCCATCGCTGCTCCTCCAAGAGA
TCCTCACCCAGCGACCGCCGCTCTTTGGGCGCAGGGACGGCAACGGTTTC
CTGTCGCCGAGGACTGCCAAAAATGGTAACCTGCAGGGAACAGCGAGCGG
CAGCACAGCGACCATAAATTTCCAGAGTGGAGCCACCAGTGCCAGGAATG
GATCCACGGCCTTTTTCGACAATGGGGCCAAGAGCTTTCAGGCCAAGCAA
CAAAAGGATAAGAACCGACGCACTGGCAACGATGCCATAAGTTCAGCACT
GTCGGCAACCTATTGCAAACTGTTGGTACTGCTAGGCGTTTGTCTGCCGA
TCACGGAAGTTATATCCGATCAGATACCGACCTATGTGTACCAGGGATTC
TACGTATACCTCTATGTGGGCAGCATACTCTTTGTGATCTTTCTGTACAT
TAGTGCCTTCCGTAATCGATCGCTCTTCAATGCCTTAAAGGACTATCACG
AAAAGAACAGCAATGTGCATCTGAAGCACAAGGTAACCCATTTTGGCAGC
TTTTACTTGAGAGTGGGAGCCATCGCCTTCGCCATTGGAACTATGGTGTA
TTCGGGCCTGGAGTTTGGCCAGTTCTTCGAGCTGAATGGCCATCCCGGAT
GCCGGGATGTCTTCGTGGCCATTACACCCATCTGCCGGATGGTCCTGTGC
ATCGCCCAGGTGCAGTTCATCTTCTTGAACACCACCTACATGGACATGGC
CCGGCACAAGGTGACCTCCCGCTTCGGACTCATGCACATGGTGGCCACCA
ACTTGTGTGAGTGGCTGTACGTCCTGGTGGAGGAGACCAAGCACGAAATT
TTCCACATCAGCCAGCACGAAGTGGATCCCGCCCACGACCTGGTCATTCA
TAATAGCTCCATGAGTAGAACGGACTGGGCCGCTGTCAATGAGTCCCTGC
ATCAGCATCATCATCATCATGCCCTTAATAACACCCTGGTGGCCAATGTG
AGTTCTGTGATTGTGAATATGACCATTACTCCGTCGCCCACGCCGGCTGC
CTTCAGCGGCTGCTCCCGCACCACGATTATGGGTGCTCTGGTGCAGCAAC
TTTCGCCATTCCTGTTCCCCTGCACCATCGAGTACTCCCTCATATGCGCC
GTAATCCTCTTCGAGATGTGGAAGACGGTCAAATCGATTCCGGACATCGA
CAAGACGCGCAAGAATTCCGTCAAGCCCGCTGCTGCCAAGCCTGCCCATC
ACTTCTCCGTGGACTGTTCCCAGTCGCACAAGGGACTCTTCTTCGGGATC
CTGATCATAGTCATGACCATTATCTCGATGATCATGTACTTTGTGCTGTA
CACCCAGCCGGGCTATGAACTGGTGGCCACACAGGAGGTCACTCTGTGGG
AGACCTTCATGTACTTTATGTGCGCAGCGGCTGTGATAACGGGCATGATC
CTCATGCGCGATCTGCGCTACATTAAGAACACCAGCGACGAGCACCACTC
GATGGATCTGGACAATCTCCTGCTGATTGTGGCCCAGACCGGGGTGTACC
TGTACGGAATGTTCAGCATCCTGGGCAGTTACTTCGCCAAATGGGACACA
GTGCCCGACCGGGTGGAGGGCATTATAGCGGAGGTCTTTGGAGTGGTGCA
GACCTCGCTGCAGACCATGTTCATCCTGCATTCCAGCCATCGGCGCTGCA
GGGGCACCAATCAGGTGAGAAGGAAGCCCGGCAGGGAGATCATCACGTTC
TTGCTGGTGGCCAACATTGCCATCTGGTTCGTAAACACCCTGATCAAGGG
ACGAGCCGTCTTCAGGGAGAGCCATTTGGAGTTCTTTGGAGTCTGGGGCT
GGACGATCATCACCCACATCTCCATGCCGCTGGCCATTTTCTACCGCTTC
CATTCGACCATTTGCCTCTTCGAGGTGTGGAAAATCACGTACAAGGCCAA
GGCGCATTAGAAGCTTTCTAGACCAT
BS06861.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:43:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3332-RA | 2394 | CG3332-PA | 1..2394 | 17..2410 | 11955 | 100 | Plus |
CG3332-RC | 2391 | CG3332-PC | 1..2391 | 17..2410 | 11875 | 99.8 | Plus |
CG3332-RD | 1944 | CG3332-PD | 105..1944 | 571..2410 | 9185 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:43:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3332-RA | 2656 | CG3332-RA | 108..2501 | 17..2410 | 11955 | 100 | Plus |
CG3332-RC | 2653 | CG3332-RC | 108..2498 | 17..2410 | 11875 | 99.8 | Plus |
CG3332-RD | 2206 | CG3332-RD | 212..2051 | 571..2410 | 9185 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:43:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3276532..3277477 | 1893..948 | 4730 | 100 | Minus |
2L | 23513712 | 2L | 3275955..3276473 | 2410..1892 | 2595 | 100 | Minus |
2L | 23513712 | 2L | 3278157..3278606 | 576..127 | 2235 | 99.8 | Minus |
2L | 23513712 | 2L | 3277543..3277760 | 947..730 | 1090 | 100 | Minus |
2L | 23513712 | 2L | 3277829..3277982 | 729..576 | 770 | 100 | Minus |
2L | 23513712 | 2L | 3279254..3279363 | 126..17 | 550 | 100 | Minus |
X | 23542271 | X | 5653915..5654003 | 2382..2294 | 205 | 82 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:43:38 has no hits.
BS06861.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:48:47 Download gff for
BS06861.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3332-RA | 92..2492 | 14..2414 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:20:31 Download gff for
BS06861.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3332-RA | 108..2501 | 17..2410 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:54:21 Download gff for
BS06861.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3332-RA | 95..2488 | 17..2410 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:16 Download gff for
BS06861.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3332-RA | 108..2501 | 17..2410 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:16 Download gff for
BS06861.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3277543..3277760 | 730..947 | 100 | <- | Minus |
2L | 3277829..3277981 | 577..729 | 100 | <- | Minus |
2L | 3275955..3276472 | 1893..2410 | 100 | <- | Minus |
2L | 3276533..3277477 | 948..1892 | 100 | <- | Minus |
2L | 3278157..3278606 | 127..576 | 99 | <- | Minus |
2L | 3279254..3279363 | 17..126 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:20:31 Download gff for
BS06861.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3275955..3276472 | 1893..2410 | 100 | <- | Minus |
arm_2L | 3276533..3277477 | 948..1892 | 100 | <- | Minus |
arm_2L | 3277543..3277760 | 730..947 | 100 | <- | Minus |
arm_2L | 3277829..3277981 | 577..729 | 100 | <- | Minus |
arm_2L | 3278157..3278606 | 127..576 | 99 | <- | Minus |
arm_2L | 3279254..3279363 | 17..126 | 100 | | Minus |
BS06861.pep Sequence
Translation from 16 to 2409
> BS06861.pep
MSLINLKSKDMYDEPINLWRTKQRVHYHHDVISKGNDSHRSSDACEYITI
SAPKKSGSFSRSPPSSLPTSVPGTPRHSVAATSNQVIRYARTSCDHCGHH
SIPVMSPHPISPLAKSQTNLDLVEHGSQRQALLPLPTVGMHHEDSACTLQ
VSRRPSLLLQEILTQRPPLFGRRDGNGFLSPRTAKNGNLQGTASGSTATI
NFQSGATSARNGSTAFFDNGAKSFQAKQQKDKNRRTGNDAISSALSATYC
KLLVLLGVCLPITEVISDQIPTYVYQGFYVYLYVGSILFVIFLYISAFRN
RSLFNALKDYHEKNSNVHLKHKVTHFGSFYLRVGAIAFAIGTMVYSGLEF
GQFFELNGHPGCRDVFVAITPICRMVLCIAQVQFIFLNTTYMDMARHKVT
SRFGLMHMVATNLCEWLYVLVEETKHEIFHISQHEVDPAHDLVIHNSSMS
RTDWAAVNESLHQHHHHHALNNTLVANVSSVIVNMTITPSPTPAAFSGCS
RTTIMGALVQQLSPFLFPCTIEYSLICAVILFEMWKTVKSIPDIDKTRKN
SVKPAAAKPAHHFSVDCSQSHKGLFFGILIIVMTIISMIMYFVLYTQPGY
ELVATQEVTLWETFMYFMCAAAVITGMILMRDLRYIKNTSDEHHSMDLDN
LLLIVAQTGVYLYGMFSILGSYFAKWDTVPDRVEGIIAEVFGVVQTSLQT
MFILHSSHRRCRGTNQVRRKPGREIITFLLVANIAIWFVNTLIKGRAVFR
ESHLEFFGVWGWTIITHISMPLAIFYRFHSTICLFEVWKITYKAKAH*
BS06861.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:09:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3332-PA | 797 | CG3332-PA | 1..797 | 1..797 | 4195 | 100 | Plus |
CG3332-PC | 796 | CG3332-PC | 1..796 | 1..797 | 4179 | 99.9 | Plus |
CG3332-PD | 647 | CG3332-PD | 36..647 | 186..797 | 3206 | 99.8 | Plus |
CG3332-PB | 629 | CG3332-PB | 4..629 | 172..797 | 3203 | 97.9 | Plus |
CG42265-PE | 1455 | CG42265-PE | 885..1451 | 234..795 | 1168 | 41.2 | Plus |
CG3332-PD | 647 | CG3332-PD | 1..51 | 1..51 | 206 | 76.5 | Plus |