Clone Sequence Records
BS06862.3prime Sequence
843 bp (791 high quality bases) assembled on 2005-12-04
> BS06862.3prime
ATGGTCTAGAAAGCTTTTACATGTAGTAATCGGGATTCCAATCTGGTGGG
CGCATATGATCTGGATTGATTCCACCCTGTCCCGGCCTATTCGGGTTCAG
GGGATTGAACGGGTCGAAGCGGGGCACGGGTCCCGGGCCCATATTTGGGC
GTGATGGAAAGCTGAACAGGTTACCATGACCACCGCGACCCAGTGGATCG
AGATCCCCGCGTCCAACGTCCGGAAATCCAAAAGGGCGAGGCTCGAATGC
ACTTGGAATGAAGGATCCGCCACGCCTTGGCTCGCCGATGCGCAAGGGAT
CTGGATCCGATCCAATGGGGCGTGGTGAGTTGGTCGTCTGCGTGGTAACT
TCGCGCGAGTTTCCCGTGAATACAGGGTCTAGAAGCTCCCTACGGTAGCG
TTCAACAATCTCTGAGGCACTCGGCATTATGGTGGTGATGCCTCCCTTGA
CCTCAGGTACCAGGGTCTCTGGTTCTACGCAGATGTTGGATACCTTCTTA
GTGTTGATGTCCAACAGGTTGATCAGCAGGGAGCCCTCGGTGATGTGGCC
CAGCAGCAAATACAGCATCTTATCGTGCACGTAGCGCAGCGAGTACTTGG
TATCGTCATCATTCCAGCTGTCCGGCAGCAGCTCACTGCCCTCCTCCTCC
GGCAAGGTTTTATCATCGCCAACGCCAACGCATCGGAAGTTGTAATGCTT
GGTCAAAAGAAAATGGACGAGGGCAATCAAAAGGTCTGACTTCTTGGAGA
CATCAGCCTTAACGGTCTTGTACAGCAGATCCCAACCGTAAAAGAAATCG
CCCGTCTTGGCAGTCGACCCACTTTCCATGTCGACTGATAACT
BS06862.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8979-PA | 813 | CG8979-RA | 1..813 | 829..17 | 4065 | 100 | Minus |
CG8979-PC | 813 | CG8979-RC | 1..813 | 829..17 | 4065 | 100 | Minus |
CG8979-PB | 813 | CG8979-RB | 1..813 | 829..17 | 4065 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:17:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PI31-RF | 1172 | CG8979-RF | 173..985 | 829..17 | 4065 | 100 | Minus |
PI31-RD | 1118 | CG8979-RD | 119..931 | 829..17 | 4065 | 100 | Minus |
PI31-RB | 1203 | CG8979-RB | 204..1016 | 829..17 | 4065 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:17:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11967837..11968231 | 267..661 | 1975 | 100 | Plus |
2R | 25286936 | 2R | 11967530..11967780 | 17..267 | 1255 | 100 | Plus |
2R | 25286936 | 2R | 11968284..11968451 | 662..829 | 840 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:17:55 has no hits.
BS06862.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:24 Download gff for
BS06862.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8979-PC | 1..813 | 17..829 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:05 Download gff for
BS06862.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8979-PB | 1..813 | 17..829 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:42:28 Download gff for
BS06862.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PI31-RB | 204..1016 | 17..829 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:50:50 Download gff for
BS06862.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PI31-RB | 204..1016 | 17..829 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:50:50 Download gff for
BS06862.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11967530..11967779 | 17..266 | 100 | <- | Plus |
2R | 11967837..11968231 | 267..661 | 100 | <- | Plus |
2R | 11968284..11968451 | 662..829 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:42:28 Download gff for
BS06862.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7855035..7855284 | 17..266 | 100 | <- | Plus |
arm_2R | 7855342..7855736 | 267..661 | 100 | <- | Plus |
arm_2R | 7855789..7855956 | 662..829 | 100 | | Plus |
BS06862.5prime Sequence
843 bp (826 high quality bases) assembled on 2005-12-04
> BS06862.5prime
GAAGTTATCAGTCGACATGGAAAGTGGGTCGACTGCCAAGACGGGCGATT
TCTTTTACGGTTGGGATCTGCTGTACAAGACCGTTAAGGCTGATGTCTCC
AAGAAGTCAGACCTTTTGATTGCCCTCGTCCATTTTCTTTTGACCAAGCA
TTACAACTTCCGATGCGTTGGCGTTGGCGATGATAAAACCTTGCCGGAGG
AGGAGGGCAGTGAGCTGCTGCCGGACAGCTGGAATGATGACGATACCAAG
TACTCGCTGCGCTACGTGCACGATAAGATGCTGTATTTGCTGCTGGGCCA
CATCACCGAGGGCTCCCTGCTGATCAACCTGTTGGACATCAACACTAAGA
AGGTATCCAACATCTGCGTAGAACCAGAGACCCTGGTACCTGAGGTCAAG
GGAGGCATCACCACCATAATGCCGAGTGCCTCAGAGATTGTTGAACGCTA
CCGTAGGGAGCTTCTAGACCCTGTATTCACGGGAAACTCGCGCGAAGTTA
CCACGCAGACGACCAACTCACCACGCCCCATTGGATCGGATCCAGATCCC
TTGCGCATCGGCGAGCCAAGGCGTGGCGGATCCTTCATTCCAAGTGCATT
CGAGCCTCGCCCTTTTGGATTTCCGGACGTTGGACGCGGGGATCTCGATC
CACTGGGTCGCGGTGGTCATGGTAACCTGTTCAGCTTTCCATCACGCCCA
AATATGGGCCCGGGACCCGTGCCCCGCTTCGACCCGTTCAATCCCCTGAA
CCCGAATAGGCCGGGACAGGGTGGAATCAATCCAGATCATATGCGCCCAC
CAGATTGGAATCCCGATTACTACATGTAAAAGCTTTCTAGACC
BS06862.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8979-PA | 813 | CG8979-RA | 1..813 | 17..829 | 4065 | 100 | Plus |
CG8979-PC | 813 | CG8979-RC | 1..813 | 17..829 | 4065 | 100 | Plus |
CG8979-PB | 813 | CG8979-RB | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:15:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PI31-RF | 1172 | CG8979-RF | 173..985 | 17..829 | 4065 | 100 | Plus |
PI31-RD | 1118 | CG8979-RD | 119..931 | 17..829 | 4065 | 100 | Plus |
PI31-RB | 1203 | CG8979-RB | 204..1016 | 17..829 | 4065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:15:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11967837..11968231 | 579..185 | 1975 | 100 | Minus |
2R | 25286936 | 2R | 11967530..11967780 | 829..579 | 1255 | 100 | Minus |
2R | 25286936 | 2R | 11968284..11968451 | 184..17 | 840 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 14:15:49 has no hits.
BS06862.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:25 Download gff for
BS06862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8979-PC | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:06 Download gff for
BS06862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8979-PB | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 03:03:52 Download gff for
BS06862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PI31-RB | 204..1016 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:06:02 Download gff for
BS06862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PI31-RB | 204..1016 | 17..829 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:06:02 Download gff for
BS06862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11967530..11967779 | 580..829 | 100 | <- | Minus |
2R | 11967837..11968231 | 185..579 | 100 | <- | Minus |
2R | 11968284..11968451 | 17..184 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 03:03:52 Download gff for
BS06862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7855035..7855284 | 580..829 | 100 | <- | Minus |
arm_2R | 7855342..7855736 | 185..579 | 100 | <- | Minus |
arm_2R | 7855789..7855956 | 17..184 | 100 | | Minus |
BS06862.complete Sequence
845 bp (845 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635648
> BS06862.complete
GAAGTTATCAGTCGACATGGAAAGTGGGTCGACTGCCAAGACGGGCGATT
TCTTTTACGGTTGGGATCTGCTGTACAAGACCGTTAAGGCTGATGTCTCC
AAGAAGTCAGACCTTTTGATTGCCCTCGTCCATTTTCTTTTGACCAAGCA
TTACAACTTCCGATGCGTTGGCGTTGGCGATGATAAAACCTTGCCGGAGG
AGGAGGGCAGTGAGCTGCTGCCGGACAGCTGGAATGATGACGATACCAAG
TACTCGCTGCGCTACGTGCACGATAAGATGCTGTATTTGCTGCTGGGCCA
CATCACCGAGGGCTCCCTGCTGATCAACCTGTTGGACATCAACACTAAGA
AGGTATCCAACATCTGCGTAGAACCAGAGACCCTGGTACCTGAGGTCAAG
GGAGGCATCACCACCATAATGCCGAGTGCCTCAGAGATTGTTGAACGCTA
CCGTAGGGAGCTTCTAGACCCTGTATTCACGGGAAACTCGCGCGAAGTTA
CCACGCAGACGACCAACTCACCACGCCCCATTGGATCGGATCCAGATCCC
TTGCGCATCGGCGAGCCAAGGCGTGGCGGATCCTTCATTCCAAGTGCATT
CGAGCCTCGCCCTTTTGGATTTCCGGACGTTGGACGCGGGGATCTCGATC
CACTGGGTCGCGGTGGTCATGGTAACCTGTTCAGCTTTCCATCACGCCCA
AATATGGGCCCGGGACCCGTGCCCCGCTTCGACCCGTTCAATCCCCTGAA
CCCGAATAGGCCGGGACAGGGTGGAATCAATCCAGATCATATGCGCCCAC
CAGATTGGAATCCCGATTACTACATGTAAAAGCTTTCTAGACCAT
BS06862.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PI31-RF | 813 | CG8979-PF | 1..813 | 17..829 | 4065 | 100 | Plus |
PI31-RD | 813 | CG8979-PD | 1..813 | 17..829 | 4065 | 100 | Plus |
PI31-RB | 813 | CG8979-PB | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PI31-RF | 1172 | CG8979-RF | 173..985 | 17..829 | 4065 | 100 | Plus |
PI31-RD | 1118 | CG8979-RD | 119..931 | 17..829 | 4065 | 100 | Plus |
PI31-RB | 1203 | CG8979-RB | 204..1016 | 17..829 | 4065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:35:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11967837..11968231 | 579..185 | 1975 | 100 | Minus |
2R | 25286936 | 2R | 11967530..11967780 | 829..579 | 1255 | 100 | Minus |
2R | 25286936 | 2R | 11968284..11968451 | 184..17 | 840 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:35:15 has no hits.
BS06862.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:01 Download gff for
BS06862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8979-RB | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:42 Download gff for
BS06862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8979-RB | 114..926 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:06 Download gff for
BS06862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PI31-RB | 204..1014 | 17..827 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:01 Download gff for
BS06862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8979-RB | 114..926 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:46 Download gff for
BS06862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PI31-RB | 204..1014 | 17..827 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:46 Download gff for
BS06862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11968284..11968451 | 17..184 | 100 | | Minus |
2R | 11967532..11967779 | 580..827 | 100 | <- | Minus |
2R | 11967837..11968231 | 185..579 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:06 Download gff for
BS06862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7855789..7855956 | 17..184 | 100 | | Minus |
arm_2R | 7855037..7855284 | 580..827 | 100 | <- | Minus |
arm_2R | 7855342..7855736 | 185..579 | 100 | <- | Minus |
BS06862.pep Sequence
Translation from 16 to 828
> BS06862.pep
MESGSTAKTGDFFYGWDLLYKTVKADVSKKSDLLIALVHFLLTKHYNFRC
VGVGDDKTLPEEEGSELLPDSWNDDDTKYSLRYVHDKMLYLLLGHITEGS
LLINLLDINTKKVSNICVEPETLVPEVKGGITTIMPSASEIVERYRRELL
DPVFTGNSREVTTQTTNSPRPIGSDPDPLRIGEPRRGGSFIPSAFEPRPF
GFPDVGRGDLDPLGRGGHGNLFSFPSRPNMGPGPVPRFDPFNPLNPNRPG
QGGINPDHMRPPDWNPDYYM*
BS06862.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PI31-PF | 270 | CG8979-PF | 1..270 | 1..270 | 1469 | 100 | Plus |
PI31-PD | 270 | CG8979-PD | 1..270 | 1..270 | 1469 | 100 | Plus |
PI31-PB | 270 | CG8979-PB | 1..270 | 1..270 | 1469 | 100 | Plus |
PI31-PC | 270 | CG8979-PC | 1..270 | 1..270 | 1469 | 100 | Plus |
PI31-PA | 270 | CG8979-PA | 1..270 | 1..270 | 1469 | 100 | Plus |