Clone BS06862 Report

Search the DGRC for BS06862

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:68
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptPI31-RA
Protein status:BS06862.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06862.3prime Sequence

843 bp (791 high quality bases) assembled on 2005-12-04

> BS06862.3prime
ATGGTCTAGAAAGCTTTTACATGTAGTAATCGGGATTCCAATCTGGTGGG
CGCATATGATCTGGATTGATTCCACCCTGTCCCGGCCTATTCGGGTTCAG
GGGATTGAACGGGTCGAAGCGGGGCACGGGTCCCGGGCCCATATTTGGGC
GTGATGGAAAGCTGAACAGGTTACCATGACCACCGCGACCCAGTGGATCG
AGATCCCCGCGTCCAACGTCCGGAAATCCAAAAGGGCGAGGCTCGAATGC
ACTTGGAATGAAGGATCCGCCACGCCTTGGCTCGCCGATGCGCAAGGGAT
CTGGATCCGATCCAATGGGGCGTGGTGAGTTGGTCGTCTGCGTGGTAACT
TCGCGCGAGTTTCCCGTGAATACAGGGTCTAGAAGCTCCCTACGGTAGCG
TTCAACAATCTCTGAGGCACTCGGCATTATGGTGGTGATGCCTCCCTTGA
CCTCAGGTACCAGGGTCTCTGGTTCTACGCAGATGTTGGATACCTTCTTA
GTGTTGATGTCCAACAGGTTGATCAGCAGGGAGCCCTCGGTGATGTGGCC
CAGCAGCAAATACAGCATCTTATCGTGCACGTAGCGCAGCGAGTACTTGG
TATCGTCATCATTCCAGCTGTCCGGCAGCAGCTCACTGCCCTCCTCCTCC
GGCAAGGTTTTATCATCGCCAACGCCAACGCATCGGAAGTTGTAATGCTT
GGTCAAAAGAAAATGGACGAGGGCAATCAAAAGGTCTGACTTCTTGGAGA
CATCAGCCTTAACGGTCTTGTACAGCAGATCCCAACCGTAAAAGAAATCG
CCCGTCTTGGCAGTCGACCCACTTTCCATGTCGACTGATAACT

BS06862.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8979-PA 813 CG8979-RA 1..813 829..17 4065 100 Minus
CG8979-PC 813 CG8979-RC 1..813 829..17 4065 100 Minus
CG8979-PB 813 CG8979-RB 1..813 829..17 4065 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:17:59
Subject Length Description Subject Range Query Range Score Percent Strand
PI31-RF 1172 CG8979-RF 173..985 829..17 4065 100 Minus
PI31-RD 1118 CG8979-RD 119..931 829..17 4065 100 Minus
PI31-RB 1203 CG8979-RB 204..1016 829..17 4065 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11967837..11968231 267..661 1975 100 Plus
2R 25286936 2R 11967530..11967780 17..267 1255 100 Plus
2R 25286936 2R 11968284..11968451 662..829 840 100 Plus
Blast to na_te.dros performed on 2015-02-06 12:17:55 has no hits.

BS06862.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:24 Download gff for BS06862.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8979-PC 1..813 17..829 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:05 Download gff for BS06862.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8979-PB 1..813 17..829 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:42:28 Download gff for BS06862.3prime
Subject Subject Range Query Range Percent Splice Strand
PI31-RB 204..1016 17..829 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:50:50 Download gff for BS06862.3prime
Subject Subject Range Query Range Percent Splice Strand
PI31-RB 204..1016 17..829 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:50:50 Download gff for BS06862.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11967530..11967779 17..266 100 <- Plus
2R 11967837..11968231 267..661 100 <- Plus
2R 11968284..11968451 662..829 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:42:28 Download gff for BS06862.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7855035..7855284 17..266 100 <- Plus
arm_2R 7855342..7855736 267..661 100 <- Plus
arm_2R 7855789..7855956 662..829 100   Plus

BS06862.5prime Sequence

843 bp (826 high quality bases) assembled on 2005-12-04

> BS06862.5prime
GAAGTTATCAGTCGACATGGAAAGTGGGTCGACTGCCAAGACGGGCGATT
TCTTTTACGGTTGGGATCTGCTGTACAAGACCGTTAAGGCTGATGTCTCC
AAGAAGTCAGACCTTTTGATTGCCCTCGTCCATTTTCTTTTGACCAAGCA
TTACAACTTCCGATGCGTTGGCGTTGGCGATGATAAAACCTTGCCGGAGG
AGGAGGGCAGTGAGCTGCTGCCGGACAGCTGGAATGATGACGATACCAAG
TACTCGCTGCGCTACGTGCACGATAAGATGCTGTATTTGCTGCTGGGCCA
CATCACCGAGGGCTCCCTGCTGATCAACCTGTTGGACATCAACACTAAGA
AGGTATCCAACATCTGCGTAGAACCAGAGACCCTGGTACCTGAGGTCAAG
GGAGGCATCACCACCATAATGCCGAGTGCCTCAGAGATTGTTGAACGCTA
CCGTAGGGAGCTTCTAGACCCTGTATTCACGGGAAACTCGCGCGAAGTTA
CCACGCAGACGACCAACTCACCACGCCCCATTGGATCGGATCCAGATCCC
TTGCGCATCGGCGAGCCAAGGCGTGGCGGATCCTTCATTCCAAGTGCATT
CGAGCCTCGCCCTTTTGGATTTCCGGACGTTGGACGCGGGGATCTCGATC
CACTGGGTCGCGGTGGTCATGGTAACCTGTTCAGCTTTCCATCACGCCCA
AATATGGGCCCGGGACCCGTGCCCCGCTTCGACCCGTTCAATCCCCTGAA
CCCGAATAGGCCGGGACAGGGTGGAATCAATCCAGATCATATGCGCCCAC
CAGATTGGAATCCCGATTACTACATGTAAAAGCTTTCTAGACC

BS06862.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8979-PA 813 CG8979-RA 1..813 17..829 4065 100 Plus
CG8979-PC 813 CG8979-RC 1..813 17..829 4065 100 Plus
CG8979-PB 813 CG8979-RB 1..813 17..829 4065 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:15:50
Subject Length Description Subject Range Query Range Score Percent Strand
PI31-RF 1172 CG8979-RF 173..985 17..829 4065 100 Plus
PI31-RD 1118 CG8979-RD 119..931 17..829 4065 100 Plus
PI31-RB 1203 CG8979-RB 204..1016 17..829 4065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:15:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11967837..11968231 579..185 1975 100 Minus
2R 25286936 2R 11967530..11967780 829..579 1255 100 Minus
2R 25286936 2R 11968284..11968451 184..17 840 100 Minus
Blast to na_te.dros performed on 2015-02-13 14:15:49 has no hits.

BS06862.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:25 Download gff for BS06862.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8979-PC 1..813 17..829 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:06 Download gff for BS06862.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8979-PB 1..813 17..829 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 03:03:52 Download gff for BS06862.5prime
Subject Subject Range Query Range Percent Splice Strand
PI31-RB 204..1016 17..829 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:06:02 Download gff for BS06862.5prime
Subject Subject Range Query Range Percent Splice Strand
PI31-RB 204..1016 17..829 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:06:02 Download gff for BS06862.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11967530..11967779 580..829 100 <- Minus
2R 11967837..11968231 185..579 100 <- Minus
2R 11968284..11968451 17..184 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 03:03:52 Download gff for BS06862.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7855035..7855284 580..829 100 <- Minus
arm_2R 7855342..7855736 185..579 100 <- Minus
arm_2R 7855789..7855956 17..184 100   Minus

BS06862.complete Sequence

845 bp (845 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635648

> BS06862.complete
GAAGTTATCAGTCGACATGGAAAGTGGGTCGACTGCCAAGACGGGCGATT
TCTTTTACGGTTGGGATCTGCTGTACAAGACCGTTAAGGCTGATGTCTCC
AAGAAGTCAGACCTTTTGATTGCCCTCGTCCATTTTCTTTTGACCAAGCA
TTACAACTTCCGATGCGTTGGCGTTGGCGATGATAAAACCTTGCCGGAGG
AGGAGGGCAGTGAGCTGCTGCCGGACAGCTGGAATGATGACGATACCAAG
TACTCGCTGCGCTACGTGCACGATAAGATGCTGTATTTGCTGCTGGGCCA
CATCACCGAGGGCTCCCTGCTGATCAACCTGTTGGACATCAACACTAAGA
AGGTATCCAACATCTGCGTAGAACCAGAGACCCTGGTACCTGAGGTCAAG
GGAGGCATCACCACCATAATGCCGAGTGCCTCAGAGATTGTTGAACGCTA
CCGTAGGGAGCTTCTAGACCCTGTATTCACGGGAAACTCGCGCGAAGTTA
CCACGCAGACGACCAACTCACCACGCCCCATTGGATCGGATCCAGATCCC
TTGCGCATCGGCGAGCCAAGGCGTGGCGGATCCTTCATTCCAAGTGCATT
CGAGCCTCGCCCTTTTGGATTTCCGGACGTTGGACGCGGGGATCTCGATC
CACTGGGTCGCGGTGGTCATGGTAACCTGTTCAGCTTTCCATCACGCCCA
AATATGGGCCCGGGACCCGTGCCCCGCTTCGACCCGTTCAATCCCCTGAA
CCCGAATAGGCCGGGACAGGGTGGAATCAATCCAGATCATATGCGCCCAC
CAGATTGGAATCCCGATTACTACATGTAAAAGCTTTCTAGACCAT

BS06862.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
PI31-RF 813 CG8979-PF 1..813 17..829 4065 100 Plus
PI31-RD 813 CG8979-PD 1..813 17..829 4065 100 Plus
PI31-RB 813 CG8979-PB 1..813 17..829 4065 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:18
Subject Length Description Subject Range Query Range Score Percent Strand
PI31-RF 1172 CG8979-RF 173..985 17..829 4065 100 Plus
PI31-RD 1118 CG8979-RD 119..931 17..829 4065 100 Plus
PI31-RB 1203 CG8979-RB 204..1016 17..829 4065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11967837..11968231 579..185 1975 100 Minus
2R 25286936 2R 11967530..11967780 829..579 1255 100 Minus
2R 25286936 2R 11968284..11968451 184..17 840 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:35:15 has no hits.

BS06862.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:01 Download gff for BS06862.complete
Subject Subject Range Query Range Percent Splice Strand
CG8979-RB 1..813 17..829 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:42 Download gff for BS06862.complete
Subject Subject Range Query Range Percent Splice Strand
CG8979-RB 114..926 17..829 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:06 Download gff for BS06862.complete
Subject Subject Range Query Range Percent Splice Strand
PI31-RB 204..1014 17..827 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:01 Download gff for BS06862.complete
Subject Subject Range Query Range Percent Splice Strand
CG8979-RB 114..926 17..829 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:46 Download gff for BS06862.complete
Subject Subject Range Query Range Percent Splice Strand
PI31-RB 204..1014 17..827 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:46 Download gff for BS06862.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11968284..11968451 17..184 100   Minus
2R 11967532..11967779 580..827 100 <- Minus
2R 11967837..11968231 185..579 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:06 Download gff for BS06862.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7855789..7855956 17..184 100   Minus
arm_2R 7855037..7855284 580..827 100 <- Minus
arm_2R 7855342..7855736 185..579 100 <- Minus

BS06862.pep Sequence

Translation from 16 to 828

> BS06862.pep
MESGSTAKTGDFFYGWDLLYKTVKADVSKKSDLLIALVHFLLTKHYNFRC
VGVGDDKTLPEEEGSELLPDSWNDDDTKYSLRYVHDKMLYLLLGHITEGS
LLINLLDINTKKVSNICVEPETLVPEVKGGITTIMPSASEIVERYRRELL
DPVFTGNSREVTTQTTNSPRPIGSDPDPLRIGEPRRGGSFIPSAFEPRPF
GFPDVGRGDLDPLGRGGHGNLFSFPSRPNMGPGPVPRFDPFNPLNPNRPG
QGGINPDHMRPPDWNPDYYM*

BS06862.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:41
Subject Length Description Subject Range Query Range Score Percent Strand
PI31-PF 270 CG8979-PF 1..270 1..270 1469 100 Plus
PI31-PD 270 CG8979-PD 1..270 1..270 1469 100 Plus
PI31-PB 270 CG8979-PB 1..270 1..270 1469 100 Plus
PI31-PC 270 CG8979-PC 1..270 1..270 1469 100 Plus
PI31-PA 270 CG8979-PA 1..270 1..270 1469 100 Plus