Clone Sequence Records
BS06863.3prime Sequence
974 bp (827 high quality bases) assembled on 2005-12-04
> BS06863.3prime
ATGGTCTAGAAAGCTTCTAGTTATGAACCTTCTTGATGGACACGCTGGTT
ATATCGGCCTCCTTGAGCTCCTCATCTGTAGTGCCATTGTAGATGTGCTT
CAGATACAGATTGAAGTAGTCTGTGTAGTTCATCGGTGTGGATATTTGAT
GCTTTCGAACTGGAAGCCGTGGCGAAAGGGACAACATGCTGGCCCACTGG
CCGTCGCAGAGGTCATCATAACGCAGTAGTCCCACCTCGTGACCTCCCAA
ATCGCCAGGACCACGGCACATGGGCTGCTGTCCGTCCCAGAGTTTCAGCA
CAAACTCTCGTATCCACCTGGCCAAATATAGAGCTCGGCAATCGCAGTGC
CAGGGATTCTTGTCCAGTTTGACGGCCACCAAATTTTTCAGGCCATGAAG
AGCTCCATGCGGCAGAAACATCAGCTTGTTGGAGTCAATGCGGAGTTTTT
CCAATTGTGAAAGCGGCTCGAAAGCGCGGGCATCGAAATTTTTAAGTATG
TTATTGTTAAGCAACAAAATCTTTAGGTTATTTAACCCTTGGAAGTCATC
GGCTTCCAAGGTGGTTAGGTTATTGGAAAATAGGGTCAAGCGTGTGAGGG
CACTAACATTCAGGAATAGATCAGCTGGAATGCTGGACATGGAGTTCTGG
CCCAAAAATAATTCATTTAGATTGTTCAGCTCCACAAAGGCATTGCCATC
TATATGACTTATCCGATTCGTGGTCAAATCAAGGGTGACCAAATTGGCCA
AATTATTGAATATGGTTCCCGACAGCGATGAGATGCGATTGTTATGCAGC
GAAAGAGTTCGTAGACTCCTTAGTCCCGCAAAGAAGTCATCATCAATCTT
AGCTATTTGATTCCATCAAAGTCCAGGGTCTTCAGCTTGGTCAGATATCT
AATGCTGCCCGAAACTAGCTCGCTGATTTTGTTTCTAGACATATCCAGCT
CCTCTAGCATCAGCTGATCTCGCA
BS06863.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7509-PA | 1848 | CG7509-RA | 998..1848 | 867..17 | 4255 | 100 | Minus |
CG7509-PA | 1848 | CG7509-RA | 890..947 | 974..917 | 290 | 100 | Minus |
CG7509-PA | 1848 | CG7509-RA | 951..997 | 913..867 | 235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:29:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7509-RA | 1958 | CG7509-RA | 907..1865 | 974..17 | 4725 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:29:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4803170..4803596 | 17..443 | 2135 | 100 | Plus |
3L | 28110227 | 3L | 4803660..4803919 | 444..703 | 1300 | 100 | Plus |
3L | 28110227 | 3L | 4803970..4804125 | 700..855 | 765 | 99.4 | Plus |
3L | 28110227 | 3L | 4804182..4804310 | 847..974 | 535 | 96.1 | Plus |
Blast to na_te.dros performed 2015-02-10 21:29:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 3559..3645 | 526..609 | 122 | 62.1 | Plus |
BS06863.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:26 Download gff for
BS06863.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7509-PA | 891..1848 | 17..973 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:08 Download gff for
BS06863.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7509-PA | 891..1848 | 17..973 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:12:47 Download gff for
BS06863.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7509-RA | 908..1873 | 7..973 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:28 Download gff for
BS06863.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7509-RA | 908..1873 | 7..973 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:28 Download gff for
BS06863.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4803162..4803596 | 7..443 | 99 | <- | Plus |
3L | 4803660..4803919 | 444..703 | 100 | <- | Plus |
3L | 4803974..4804122 | 704..852 | 100 | <- | Plus |
3L | 4804188..4804309 | 853..973 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:12:47 Download gff for
BS06863.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4803162..4803596 | 7..443 | 99 | <- | Plus |
arm_3L | 4803660..4803919 | 444..703 | 100 | <- | Plus |
arm_3L | 4803974..4804122 | 704..852 | 100 | <- | Plus |
arm_3L | 4804188..4804309 | 853..973 | 97 | | Plus |
BS06863.5prime Sequence
870 bp (822 high quality bases) assembled on 2005-12-04
> BS06863.5prime
GAAGTTATCAGTCGACATGTCGCTTGGAGTATGGCAACTAGTCAGCTTAG
TCTTGCTGATGGATCCGGCCGAGGTGATCACAGGACCTTCACAGGCAAAG
GAGCCGCCCATCCAGAGTCTGGATGAGTTCCGGCAGAGGTACCTGCTCCC
TCTCATTTCCTCGGACACAAGAAACTGCAGTCTGAATGCATGTGAATCAC
TGGGTATTGTATCCCAGCTATTGATGCTTATCAACTCAATGCCAAATGGA
ACCCAGTCCGCTGCGAACGATAAAAAACCACCTAAGTCCAAGGCGAATGG
ACATAATGATGGAGATGTCAATGGCGGTGAGATTAATGCCATGTCCCATT
TGGCCAACTTTGATCTGGTGAAGCGGGTGCGACAGATCGAGAGTCGACTA
CGATCCGTGGAGCAGCCCGTCTGGCACTTGGCCACTGGCAGCCAAATCGA
GTGGAATCACTGCACCTCAGGCGTGTGTCGCTGCAATCCGGACACCAAGA
GCTTCACCTGCTGGAATACCAATCTTAAATCAGTGCCTGTCACTCAGGTG
ATACCCATGAATATGGTCAACATAGATCTTTCGCGGAACATCCTTTCCAC
CCTGCACAAGGATACCTTTCGAGGACTAACCGTGCTTAAAGAGTTGGATA
TATCGCACAATGTTTTGGATTTTCTGCCCTTCGATTTGTTTCAGGATCTG
GATAGTCTCTTGGTTTTGCGCATTCAAAACAATCAACTGGAGGATATTGA
TCATCGTACCTTCTGGAAGCTACGAAACCTGAATATTCTGGATCTGAGTA
AAAACGAGATAGGAATGCTGCCCGAAATCATATTTTACCATGCCCAAAGG
CTCACCGTGATTAATATGTG
BS06863.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7509-PA | 1848 | CG7509-RA | 1..810 | 17..826 | 4050 | 100 | Plus |
CG7509-PA | 1848 | CG7509-RA | 814..854 | 830..870 | 205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:59:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7509-RA | 1958 | CG7509-RA | 15..871 | 14..870 | 4240 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:59:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4804701..4805260 | 573..14 | 2800 | 100 | Minus |
3L | 28110227 | 3L | 4804346..4804642 | 870..574 | 1440 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:59:22 has no hits.
BS06863.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:28 Download gff for
BS06863.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7509-PA | 1..854 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:09 Download gff for
BS06863.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7509-PA | 1..854 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:27:29 Download gff for
BS06863.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7509-RA | 15..871 | 14..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:28:13 Download gff for
BS06863.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7509-RA | 15..871 | 14..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:28:13 Download gff for
BS06863.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4804346..4804642 | 574..870 | 99 | <- | Minus |
3L | 4804701..4805260 | 14..573 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:27:29 Download gff for
BS06863.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4804346..4804642 | 574..870 | 99 | <- | Minus |
arm_3L | 4804701..4805260 | 14..573 | 100 | | Minus |
BS06863.complete Sequence
1880 bp assembled on 2008-08-14
GenBank Submission: FJ635649
> BS06863.complete
GAAGTTATCAGTCGACATGTCGCTTGGAGTATGGCAACTAGTCAGCTTAG
TCTTGCTGATGGATCCGGCCGAGGTGATCACAGGACCTTCACAGGCAAAG
GAGCCGCCCATCCAGAGTCTGGATGAGTTCCGGCAGAGGTACCTGCTCCC
TCTCATTTCCTCGGACACAAGAAACTGCAGTCTGAATGCATGTGAATCAC
TGGGTATTGTATCCCAGCTATTGATGCTTATCAACTCAATGCCAAATGGA
ACCCAGTCCGCTGCGAACGATAAAAAACCACCTAAGTCCAAGGCGAATGG
ACATAATGATGGAGATGTCAATGGCGGTGAGATTAATGCCATGTCCCATT
TGGCCAACTTTGATCTGGTGAAGCGGGTGCGACAGATCGAGAGTCGACTA
CGATCCGTGGAGCAGCCCGTCTGGCACTTGGCCACTGGCAGCCAAATCGA
GTGGAATCACTGCACCTCAGGCGTGTGTCGCTGCAATCCGGACACCAAGA
GCTTCACCTGCTGGAATACCAATCTTAAATCAGTGCCTGTCACTCAGGTG
ATACCCATGAATATGGTCAACATAGATCTTTCGCGGAACATCCTTTCCAC
CCTGCACAAGGATACCTTTCGAGGACTAACCGTGCTTAAAGAGTTGGATA
TATCGCACAATGTTTTGGATTTTCTGCCCTTCGATTTGTTTCAGGATCTG
GATAGTCTCTTGGTTTTGCGCATTCAAAACAATCAACTGGAGGATATTGA
TCATCGTACCTTCTGGAAGCTACGAAACCTGAATATTCTGGATCTGAGTA
AAAACGAGATAGGAATGCTGCCCGAATCAATATTTTACCATGCCCAAAGG
CTCACCGTGATTAATATGTGCGACAATCAGATTCAGAACTTTCCACCCAA
CCTCCTGCGAGATCAGCTGATGCTAGAGGAGCTGGATATGTCTAGAAACA
AAATCAGCGAGCTTAGTTCGGGCAGCATTAGATATCTGACCAAGCTGAAG
ACCCTGGACTTTGGATGGAATCAAATAGCTAAGATTGATGATGACTTCTT
TGCGGGACTAAGGAGTCTACGAACTCTTTCGCTGCATAACAATCGCATCT
CATCGCTGTCGGGAACCATATTCAATAATTTGGCCAATTTGGTCACCCTT
GATTTGACCACGAATCGGATAAGTCATATAGATGGCAATGCCTTTGTGGA
GCTGAACAATCTAAATGAATTATTTTTGGGCCAGAACTCCATGTCCAGCA
TTCCAGCTGATCTATTCCTGAATGTTAGTGCCCTCACACGCTTGACCCTA
TTTTCCAATAACCTAACCACCTTGGAAGCCGATGACTTCCAAGGGTTAAA
TAACCTAAAGATTTTGTTGCTTAACAATAACATACTTAAAAATTTCGATG
CCCGCGCTTTCGAGCCGCTTTCACAATTGGAAAAACTCCGCATTGACTCC
AACAAGCTGATGTTTCTGCCGCATGGAGCTCTTCATGGCCTGAAAAATTT
GGTGGCCGTCAAACTGGACAAGAATCCCTGGCACTGCGATTGCCGAGCTC
TATATTTGGCCAGGTGGATACGAGAGTTTGTGCTGAAACTCTGGGACGGA
CAGCAGCCCATGTGCCGTGGTCCTGGCGATTTGGGAGGTCACGAGGTGGG
ACTACTGCGTTATGATGACCTCTGCGACGGCCAGTGGGCCAGCATGTTGT
CCCTTTCGCCACGGCTTCCAGTTCGAAAGCATCAAATATCCACACCGATG
AACTACACAGACTACTTCAATCTGTATCTGAAGCACATCTACAATGGCAC
TACAGATGAGGAGCTCAAGGAGGCCGATATAACCAGCGTGTCCATCAAGA
AGGTTCATAACTAGAAGCTTTCTAGACCAT
BS06863.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:05:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7509-RA | 1848 | CG7509-PA | 1..1848 | 17..1864 | 9240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7509-RA | 1958 | CG7509-RA | 15..1865 | 14..1864 | 9255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4804701..4805260 | 573..14 | 2800 | 100 | Minus |
3L | 28110227 | 3L | 4804182..4804642 | 1034..574 | 2290 | 99.8 | Minus |
3L | 28110227 | 3L | 4803170..4803596 | 1864..1438 | 2135 | 100 | Minus |
3L | 28110227 | 3L | 4803660..4803919 | 1437..1178 | 1300 | 100 | Minus |
3L | 28110227 | 3L | 4803970..4804125 | 1181..1026 | 765 | 99.4 | Minus |
Blast to na_te.dros performed 2014-11-28 01:05:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 3559..3645 | 1355..1272 | 122 | 62.1 | Minus |
BS06863.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:43:28 Download gff for
BS06863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7509-RA | 15..1873 | 14..1874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:40 Download gff for
BS06863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7509-RA | 18..1865 | 17..1864 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:25 Download gff for
BS06863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7509-RA | 18..1865 | 17..1864 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:15 Download gff for
BS06863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7509-RA | 18..1865 | 17..1864 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:15 Download gff for
BS06863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4803170..4803596 | 1438..1864 | 100 | <- | Minus |
3L | 4803660..4803919 | 1178..1437 | 100 | <- | Minus |
3L | 4803974..4804122 | 1029..1177 | 100 | <- | Minus |
3L | 4804188..4804642 | 574..1028 | 100 | <- | Minus |
3L | 4804701..4805257 | 17..573 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:40 Download gff for
BS06863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4803170..4803596 | 1438..1864 | 100 | <- | Minus |
arm_3L | 4803660..4803919 | 1178..1437 | 100 | <- | Minus |
arm_3L | 4803974..4804122 | 1029..1177 | 100 | <- | Minus |
arm_3L | 4804188..4804642 | 574..1028 | 100 | <- | Minus |
arm_3L | 4804701..4805257 | 17..573 | 100 | | Minus |
BS06863.pep Sequence
Translation from 16 to 1863
> BS06863.pep
MSLGVWQLVSLVLLMDPAEVITGPSQAKEPPIQSLDEFRQRYLLPLISSD
TRNCSLNACESLGIVSQLLMLINSMPNGTQSAANDKKPPKSKANGHNDGD
VNGGEINAMSHLANFDLVKRVRQIESRLRSVEQPVWHLATGSQIEWNHCT
SGVCRCNPDTKSFTCWNTNLKSVPVTQVIPMNMVNIDLSRNILSTLHKDT
FRGLTVLKELDISHNVLDFLPFDLFQDLDSLLVLRIQNNQLEDIDHRTFW
KLRNLNILDLSKNEIGMLPESIFYHAQRLTVINMCDNQIQNFPPNLLRDQ
LMLEELDMSRNKISELSSGSIRYLTKLKTLDFGWNQIAKIDDDFFAGLRS
LRTLSLHNNRISSLSGTIFNNLANLVTLDLTTNRISHIDGNAFVELNNLN
ELFLGQNSMSSIPADLFLNVSALTRLTLFSNNLTTLEADDFQGLNNLKIL
LLNNNILKNFDARAFEPLSQLEKLRIDSNKLMFLPHGALHGLKNLVAVKL
DKNPWHCDCRALYLARWIREFVLKLWDGQQPMCRGPGDLGGHEVGLLRYD
DLCDGQWASMLSLSPRLPVRKHQISTPMNYTDYFNLYLKHIYNGTTDEEL
KEADITSVSIKKVHN*
BS06863.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:17:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7509-PA | 615 | CG7509-PA | 1..615 | 1..615 | 3213 | 100 | Plus |
18w-PA | 1385 | CG8896-PA | 240..557 | 186..503 | 376 | 30.6 | Plus |
atk-PC | 1535 | CG5195-PC | 550..870 | 182..503 | 370 | 29.5 | Plus |
atk-PB | 1535 | CG5195-PB | 550..870 | 182..503 | 370 | 29.5 | Plus |
atk-PA | 1535 | CG5195-PA | 550..870 | 182..503 | 370 | 29.5 | Plus |
18w-PA | 1385 | CG8896-PA | 237..534 | 207..503 | 328 | 29.1 | Plus |
atk-PC | 1535 | CG5195-PC | 363..655 | 186..503 | 317 | 28.5 | Plus |
atk-PB | 1535 | CG5195-PB | 363..655 | 186..503 | 317 | 28.5 | Plus |
18w-PA | 1385 | CG8896-PA | 136..486 | 196..503 | 307 | 27 | Plus |
18w-PA | 1385 | CG8896-PA | 288..692 | 186..516 | 293 | 27 | Plus |
atk-PC | 1535 | CG5195-PC | 208..607 | 181..503 | 261 | 26 | Plus |
atk-PB | 1535 | CG5195-PB | 208..607 | 181..503 | 261 | 26 | Plus |
atk-PC | 1535 | CG5195-PC | 196..559 | 193..503 | 241 | 26.7 | Plus |
atk-PB | 1535 | CG5195-PB | 196..559 | 193..503 | 241 | 26.7 | Plus |
atk-PC | 1535 | CG5195-PC | 717..921 | 182..385 | 228 | 30.2 | Plus |
atk-PB | 1535 | CG5195-PB | 717..921 | 182..385 | 228 | 30.2 | Plus |
18w-PA | 1385 | CG8896-PA | 67..394 | 184..506 | 210 | 25.6 | Plus |
atk-PC | 1535 | CG5195-PC | 67..392 | 207..503 | 200 | 24 | Plus |
atk-PB | 1535 | CG5195-PB | 67..392 | 207..503 | 200 | 24 | Plus |
atk-PC | 1535 | CG5195-PC | 125..464 | 170..503 | 198 | 25.4 | Plus |
atk-PB | 1535 | CG5195-PB | 125..464 | 170..503 | 198 | 25.4 | Plus |
18w-PA | 1385 | CG8896-PA | 798..955 | 387..537 | 194 | 32.5 | Plus |
18w-PA | 1385 | CG8896-PA | 430..714 | 159..451 | 179 | 25.8 | Plus |