Clone BS06863 Report

Search the DGRC for BS06863

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:68
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptCG7509-RA
Protein status:BS06863.pep: full length peptide match
Sequenced Size:1880

Clone Sequence Records

BS06863.3prime Sequence

974 bp (827 high quality bases) assembled on 2005-12-04

> BS06863.3prime
ATGGTCTAGAAAGCTTCTAGTTATGAACCTTCTTGATGGACACGCTGGTT
ATATCGGCCTCCTTGAGCTCCTCATCTGTAGTGCCATTGTAGATGTGCTT
CAGATACAGATTGAAGTAGTCTGTGTAGTTCATCGGTGTGGATATTTGAT
GCTTTCGAACTGGAAGCCGTGGCGAAAGGGACAACATGCTGGCCCACTGG
CCGTCGCAGAGGTCATCATAACGCAGTAGTCCCACCTCGTGACCTCCCAA
ATCGCCAGGACCACGGCACATGGGCTGCTGTCCGTCCCAGAGTTTCAGCA
CAAACTCTCGTATCCACCTGGCCAAATATAGAGCTCGGCAATCGCAGTGC
CAGGGATTCTTGTCCAGTTTGACGGCCACCAAATTTTTCAGGCCATGAAG
AGCTCCATGCGGCAGAAACATCAGCTTGTTGGAGTCAATGCGGAGTTTTT
CCAATTGTGAAAGCGGCTCGAAAGCGCGGGCATCGAAATTTTTAAGTATG
TTATTGTTAAGCAACAAAATCTTTAGGTTATTTAACCCTTGGAAGTCATC
GGCTTCCAAGGTGGTTAGGTTATTGGAAAATAGGGTCAAGCGTGTGAGGG
CACTAACATTCAGGAATAGATCAGCTGGAATGCTGGACATGGAGTTCTGG
CCCAAAAATAATTCATTTAGATTGTTCAGCTCCACAAAGGCATTGCCATC
TATATGACTTATCCGATTCGTGGTCAAATCAAGGGTGACCAAATTGGCCA
AATTATTGAATATGGTTCCCGACAGCGATGAGATGCGATTGTTATGCAGC
GAAAGAGTTCGTAGACTCCTTAGTCCCGCAAAGAAGTCATCATCAATCTT
AGCTATTTGATTCCATCAAAGTCCAGGGTCTTCAGCTTGGTCAGATATCT
AATGCTGCCCGAAACTAGCTCGCTGATTTTGTTTCTAGACATATCCAGCT
CCTCTAGCATCAGCTGATCTCGCA

BS06863.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7509-PA 1848 CG7509-RA 998..1848 867..17 4255 100 Minus
CG7509-PA 1848 CG7509-RA 890..947 974..917 290 100 Minus
CG7509-PA 1848 CG7509-RA 951..997 913..867 235 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG7509-RA 1958 CG7509-RA 907..1865 974..17 4725 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:29:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4803170..4803596 17..443 2135 100 Plus
3L 28110227 3L 4803660..4803919 444..703 1300 100 Plus
3L 28110227 3L 4803970..4804125 700..855 765 99.4 Plus
3L 28110227 3L 4804182..4804310 847..974 535 96.1 Plus
Blast to na_te.dros performed 2015-02-10 21:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 3559..3645 526..609 122 62.1 Plus

BS06863.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:26 Download gff for BS06863.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7509-PA 891..1848 17..973 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:08 Download gff for BS06863.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7509-PA 891..1848 17..973 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:12:47 Download gff for BS06863.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7509-RA 908..1873 7..973 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:28 Download gff for BS06863.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7509-RA 908..1873 7..973 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:28 Download gff for BS06863.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4803162..4803596 7..443 99 <- Plus
3L 4803660..4803919 444..703 100 <- Plus
3L 4803974..4804122 704..852 100 <- Plus
3L 4804188..4804309 853..973 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:12:47 Download gff for BS06863.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4803162..4803596 7..443 99 <- Plus
arm_3L 4803660..4803919 444..703 100 <- Plus
arm_3L 4803974..4804122 704..852 100 <- Plus
arm_3L 4804188..4804309 853..973 97   Plus

BS06863.5prime Sequence

870 bp (822 high quality bases) assembled on 2005-12-04

> BS06863.5prime
GAAGTTATCAGTCGACATGTCGCTTGGAGTATGGCAACTAGTCAGCTTAG
TCTTGCTGATGGATCCGGCCGAGGTGATCACAGGACCTTCACAGGCAAAG
GAGCCGCCCATCCAGAGTCTGGATGAGTTCCGGCAGAGGTACCTGCTCCC
TCTCATTTCCTCGGACACAAGAAACTGCAGTCTGAATGCATGTGAATCAC
TGGGTATTGTATCCCAGCTATTGATGCTTATCAACTCAATGCCAAATGGA
ACCCAGTCCGCTGCGAACGATAAAAAACCACCTAAGTCCAAGGCGAATGG
ACATAATGATGGAGATGTCAATGGCGGTGAGATTAATGCCATGTCCCATT
TGGCCAACTTTGATCTGGTGAAGCGGGTGCGACAGATCGAGAGTCGACTA
CGATCCGTGGAGCAGCCCGTCTGGCACTTGGCCACTGGCAGCCAAATCGA
GTGGAATCACTGCACCTCAGGCGTGTGTCGCTGCAATCCGGACACCAAGA
GCTTCACCTGCTGGAATACCAATCTTAAATCAGTGCCTGTCACTCAGGTG
ATACCCATGAATATGGTCAACATAGATCTTTCGCGGAACATCCTTTCCAC
CCTGCACAAGGATACCTTTCGAGGACTAACCGTGCTTAAAGAGTTGGATA
TATCGCACAATGTTTTGGATTTTCTGCCCTTCGATTTGTTTCAGGATCTG
GATAGTCTCTTGGTTTTGCGCATTCAAAACAATCAACTGGAGGATATTGA
TCATCGTACCTTCTGGAAGCTACGAAACCTGAATATTCTGGATCTGAGTA
AAAACGAGATAGGAATGCTGCCCGAAATCATATTTTACCATGCCCAAAGG
CTCACCGTGATTAATATGTG

BS06863.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7509-PA 1848 CG7509-RA 1..810 17..826 4050 100 Plus
CG7509-PA 1848 CG7509-RA 814..854 830..870 205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:59:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG7509-RA 1958 CG7509-RA 15..871 14..870 4240 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:59:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4804701..4805260 573..14 2800 100 Minus
3L 28110227 3L 4804346..4804642 870..574 1440 99 Minus
Blast to na_te.dros performed on 2015-02-12 18:59:22 has no hits.

BS06863.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:28 Download gff for BS06863.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7509-PA 1..854 17..870 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:09 Download gff for BS06863.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7509-PA 1..854 17..870 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:27:29 Download gff for BS06863.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7509-RA 15..871 14..870 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:28:13 Download gff for BS06863.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7509-RA 15..871 14..870 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:28:13 Download gff for BS06863.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4804346..4804642 574..870 99 <- Minus
3L 4804701..4805260 14..573 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:27:29 Download gff for BS06863.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4804346..4804642 574..870 99 <- Minus
arm_3L 4804701..4805260 14..573 100   Minus

BS06863.complete Sequence

1880 bp assembled on 2008-08-14

GenBank Submission: FJ635649

> BS06863.complete
GAAGTTATCAGTCGACATGTCGCTTGGAGTATGGCAACTAGTCAGCTTAG
TCTTGCTGATGGATCCGGCCGAGGTGATCACAGGACCTTCACAGGCAAAG
GAGCCGCCCATCCAGAGTCTGGATGAGTTCCGGCAGAGGTACCTGCTCCC
TCTCATTTCCTCGGACACAAGAAACTGCAGTCTGAATGCATGTGAATCAC
TGGGTATTGTATCCCAGCTATTGATGCTTATCAACTCAATGCCAAATGGA
ACCCAGTCCGCTGCGAACGATAAAAAACCACCTAAGTCCAAGGCGAATGG
ACATAATGATGGAGATGTCAATGGCGGTGAGATTAATGCCATGTCCCATT
TGGCCAACTTTGATCTGGTGAAGCGGGTGCGACAGATCGAGAGTCGACTA
CGATCCGTGGAGCAGCCCGTCTGGCACTTGGCCACTGGCAGCCAAATCGA
GTGGAATCACTGCACCTCAGGCGTGTGTCGCTGCAATCCGGACACCAAGA
GCTTCACCTGCTGGAATACCAATCTTAAATCAGTGCCTGTCACTCAGGTG
ATACCCATGAATATGGTCAACATAGATCTTTCGCGGAACATCCTTTCCAC
CCTGCACAAGGATACCTTTCGAGGACTAACCGTGCTTAAAGAGTTGGATA
TATCGCACAATGTTTTGGATTTTCTGCCCTTCGATTTGTTTCAGGATCTG
GATAGTCTCTTGGTTTTGCGCATTCAAAACAATCAACTGGAGGATATTGA
TCATCGTACCTTCTGGAAGCTACGAAACCTGAATATTCTGGATCTGAGTA
AAAACGAGATAGGAATGCTGCCCGAATCAATATTTTACCATGCCCAAAGG
CTCACCGTGATTAATATGTGCGACAATCAGATTCAGAACTTTCCACCCAA
CCTCCTGCGAGATCAGCTGATGCTAGAGGAGCTGGATATGTCTAGAAACA
AAATCAGCGAGCTTAGTTCGGGCAGCATTAGATATCTGACCAAGCTGAAG
ACCCTGGACTTTGGATGGAATCAAATAGCTAAGATTGATGATGACTTCTT
TGCGGGACTAAGGAGTCTACGAACTCTTTCGCTGCATAACAATCGCATCT
CATCGCTGTCGGGAACCATATTCAATAATTTGGCCAATTTGGTCACCCTT
GATTTGACCACGAATCGGATAAGTCATATAGATGGCAATGCCTTTGTGGA
GCTGAACAATCTAAATGAATTATTTTTGGGCCAGAACTCCATGTCCAGCA
TTCCAGCTGATCTATTCCTGAATGTTAGTGCCCTCACACGCTTGACCCTA
TTTTCCAATAACCTAACCACCTTGGAAGCCGATGACTTCCAAGGGTTAAA
TAACCTAAAGATTTTGTTGCTTAACAATAACATACTTAAAAATTTCGATG
CCCGCGCTTTCGAGCCGCTTTCACAATTGGAAAAACTCCGCATTGACTCC
AACAAGCTGATGTTTCTGCCGCATGGAGCTCTTCATGGCCTGAAAAATTT
GGTGGCCGTCAAACTGGACAAGAATCCCTGGCACTGCGATTGCCGAGCTC
TATATTTGGCCAGGTGGATACGAGAGTTTGTGCTGAAACTCTGGGACGGA
CAGCAGCCCATGTGCCGTGGTCCTGGCGATTTGGGAGGTCACGAGGTGGG
ACTACTGCGTTATGATGACCTCTGCGACGGCCAGTGGGCCAGCATGTTGT
CCCTTTCGCCACGGCTTCCAGTTCGAAAGCATCAAATATCCACACCGATG
AACTACACAGACTACTTCAATCTGTATCTGAAGCACATCTACAATGGCAC
TACAGATGAGGAGCTCAAGGAGGCCGATATAACCAGCGTGTCCATCAAGA
AGGTTCATAACTAGAAGCTTTCTAGACCAT

BS06863.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG7509-RA 1848 CG7509-PA 1..1848 17..1864 9240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG7509-RA 1958 CG7509-RA 15..1865 14..1864 9255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4804701..4805260 573..14 2800 100 Minus
3L 28110227 3L 4804182..4804642 1034..574 2290 99.8 Minus
3L 28110227 3L 4803170..4803596 1864..1438 2135 100 Minus
3L 28110227 3L 4803660..4803919 1437..1178 1300 100 Minus
3L 28110227 3L 4803970..4804125 1181..1026 765 99.4 Minus
Blast to na_te.dros performed 2014-11-28 01:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 3559..3645 1355..1272 122 62.1 Minus

BS06863.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:43:28 Download gff for BS06863.complete
Subject Subject Range Query Range Percent Splice Strand
CG7509-RA 15..1873 14..1874 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:40 Download gff for BS06863.complete
Subject Subject Range Query Range Percent Splice Strand
CG7509-RA 18..1865 17..1864 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:25 Download gff for BS06863.complete
Subject Subject Range Query Range Percent Splice Strand
CG7509-RA 18..1865 17..1864 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:15 Download gff for BS06863.complete
Subject Subject Range Query Range Percent Splice Strand
CG7509-RA 18..1865 17..1864 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:15 Download gff for BS06863.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4803170..4803596 1438..1864 100 <- Minus
3L 4803660..4803919 1178..1437 100 <- Minus
3L 4803974..4804122 1029..1177 100 <- Minus
3L 4804188..4804642 574..1028 100 <- Minus
3L 4804701..4805257 17..573 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:40 Download gff for BS06863.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4803170..4803596 1438..1864 100 <- Minus
arm_3L 4803660..4803919 1178..1437 100 <- Minus
arm_3L 4803974..4804122 1029..1177 100 <- Minus
arm_3L 4804188..4804642 574..1028 100 <- Minus
arm_3L 4804701..4805257 17..573 100   Minus

BS06863.pep Sequence

Translation from 16 to 1863

> BS06863.pep
MSLGVWQLVSLVLLMDPAEVITGPSQAKEPPIQSLDEFRQRYLLPLISSD
TRNCSLNACESLGIVSQLLMLINSMPNGTQSAANDKKPPKSKANGHNDGD
VNGGEINAMSHLANFDLVKRVRQIESRLRSVEQPVWHLATGSQIEWNHCT
SGVCRCNPDTKSFTCWNTNLKSVPVTQVIPMNMVNIDLSRNILSTLHKDT
FRGLTVLKELDISHNVLDFLPFDLFQDLDSLLVLRIQNNQLEDIDHRTFW
KLRNLNILDLSKNEIGMLPESIFYHAQRLTVINMCDNQIQNFPPNLLRDQ
LMLEELDMSRNKISELSSGSIRYLTKLKTLDFGWNQIAKIDDDFFAGLRS
LRTLSLHNNRISSLSGTIFNNLANLVTLDLTTNRISHIDGNAFVELNNLN
ELFLGQNSMSSIPADLFLNVSALTRLTLFSNNLTTLEADDFQGLNNLKIL
LLNNNILKNFDARAFEPLSQLEKLRIDSNKLMFLPHGALHGLKNLVAVKL
DKNPWHCDCRALYLARWIREFVLKLWDGQQPMCRGPGDLGGHEVGLLRYD
DLCDGQWASMLSLSPRLPVRKHQISTPMNYTDYFNLYLKHIYNGTTDEEL
KEADITSVSIKKVHN*

BS06863.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7509-PA 615 CG7509-PA 1..615 1..615 3213 100 Plus
18w-PA 1385 CG8896-PA 240..557 186..503 376 30.6 Plus
atk-PC 1535 CG5195-PC 550..870 182..503 370 29.5 Plus
atk-PB 1535 CG5195-PB 550..870 182..503 370 29.5 Plus
atk-PA 1535 CG5195-PA 550..870 182..503 370 29.5 Plus
18w-PA 1385 CG8896-PA 237..534 207..503 328 29.1 Plus
atk-PC 1535 CG5195-PC 363..655 186..503 317 28.5 Plus
atk-PB 1535 CG5195-PB 363..655 186..503 317 28.5 Plus
18w-PA 1385 CG8896-PA 136..486 196..503 307 27 Plus
18w-PA 1385 CG8896-PA 288..692 186..516 293 27 Plus
atk-PC 1535 CG5195-PC 208..607 181..503 261 26 Plus
atk-PB 1535 CG5195-PB 208..607 181..503 261 26 Plus
atk-PC 1535 CG5195-PC 196..559 193..503 241 26.7 Plus
atk-PB 1535 CG5195-PB 196..559 193..503 241 26.7 Plus
atk-PC 1535 CG5195-PC 717..921 182..385 228 30.2 Plus
atk-PB 1535 CG5195-PB 717..921 182..385 228 30.2 Plus
18w-PA 1385 CG8896-PA 67..394 184..506 210 25.6 Plus
atk-PC 1535 CG5195-PC 67..392 207..503 200 24 Plus
atk-PB 1535 CG5195-PB 67..392 207..503 200 24 Plus
atk-PC 1535 CG5195-PC 125..464 170..503 198 25.4 Plus
atk-PB 1535 CG5195-PB 125..464 170..503 198 25.4 Plus
18w-PA 1385 CG8896-PA 798..955 387..537 194 32.5 Plus
18w-PA 1385 CG8896-PA 430..714 159..451 179 25.8 Plus