Clone BS06867 Report

Search the DGRC for BS06867

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:68
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptCG4847-RA
Protein status:BS06867.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06867.3prime Sequence

993 bp (769 high quality bases) assembled on 2005-12-04

> BS06867.3prime
ATGGTCTAGAAAGCTTTTAAACCACGGGATAGGAGCACTCCTCAGCAATG
AAGCAGTAGTTTTTGCCGCGAGGCAGGCGGAAGTAGCCCTTTTCGCCCCA
GGTGTCGTCCCAGGAGTTCTTGACGATCCAGTAATCCTGTCCTTTCTCCG
ATCCGTAACCGACGACCAGAATGGAGTGGTTCGGCTCGCCCTTGTTGCAC
TCATCGTCGTTATAGATGCCACCGGCGTAGTTCTTAAGAGTCTCCAAACC
ATTCACCGAACAGGCAACTGGTCCCAGAGTGGCCACCACCTTCTTCAGCT
GCTCCTCGTCCTTGGGCGGAATAGCGGCGAATCCCTGGAGGGTGGCTCCG
GACTTGCTGCCATCGTACTTGCACGTGCCCTTGTTGTCAATGTAGGGATA
GGCCCCCTCCTGGGACACACCCTTTTGCACCTCATCGATGAAACAGAATG
CGGCCTCCTGGAAGCCACCATCGCAGCCATTCAGGCCAAAGTCCTCCACC
GGACCACAGTCGACCAGATTCTGCTCAGAGAGATTGGGCAGGCTGCCGGT
CTTGCGGAAGGTGTGTCCCTCAATGGCACCAGTGGTGGCAAAGGCCCAAC
AGGAGCCACAGGTACCCTGGAATTTGACTGGTGTGACACCGCCATGCTCG
CGCCAATCGAAGGCATCCGGGATGGGCTTCGCAGGCAGGTTGACCAACTT
CAAACTGGCAGCAGCTCGAGCCTTAGCCTCCGGACTTCTCTTCAGACCGG
TCAATTGACTAAGGAACTCAGAGTGGGTCAGATCGGCGAANGCGTTCACG
GCCTGCTTGAAGGTGTGCACTCCTTGGGCAAAGGCTGCGTTTCCGGCTTC
ACCAGGTTCTTGGTGGAAGCGAAGGCACCTTCATGAAGAGCGCGATCAGC
GGCGGAGAGATAGGTCTTTCCAGATGGGCTCAAGAAGTCACCAAAGTCCT
GGACGTTTGAGAGCAGCGGCACCTGGGGCACAGGCCTGGGCAT

BS06867.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4847-PA 1173 CG4847-RA 340..1173 850..17 4151 99.8 Minus
CG4847-PC 1173 CG4847-RC 340..1173 850..17 4151 99.8 Minus
CG4847-PD 1263 CG4847-RD 430..1263 850..17 4151 99.8 Minus
CG4847-PB 1173 CG4847-RB 340..1173 850..17 4151 99.8 Minus
CG4847-PE 1173 CG4847-RE 340..1173 850..17 4151 99.8 Minus
CG4847-PA 1173 CG4847-RA 206..339 983..850 620 98.5 Minus
CG4847-PC 1173 CG4847-RC 206..339 983..850 620 98.5 Minus
CG4847-PD 1263 CG4847-RD 296..429 983..850 620 98.5 Minus
CG4847-PB 1173 CG4847-RB 206..339 983..850 620 98.5 Minus
CG4847-PE 1173 CG4847-RE 206..339 983..850 620 98.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4847-RE 1308 CG4847-RE 233..1208 992..17 4779 99.4 Minus
CG4847-RD 1501 CG4847-RD 426..1401 992..17 4779 99.4 Minus
CG4847-RC 1313 CG4847-RC 238..1213 992..17 4779 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17513050..17513755 722..17 3530 100 Minus
2R 25286936 2R 17512775..17512985 931..722 979 98.6 Minus
2R 25286936 2R 17512663..17512715 983..931 250 98.1 Minus
Blast to na_te.dros performed on 2015-02-12 18:43:38 has no hits.

BS06867.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:36 Download gff for BS06867.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4847-PD 286..1263 17..993 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:19 Download gff for BS06867.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4847-PC 196..1173 17..993 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:57:06 Download gff for BS06867.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4847-RC 236..1215 13..993 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:14:19 Download gff for BS06867.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4847-RC 236..1215 13..993 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:14:19 Download gff for BS06867.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17512653..17512715 931..993 93 -> Minus
2R 17512776..17512984 723..930 98 -> Minus
2R 17513050..17513757 13..722 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:57:06 Download gff for BS06867.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13400158..13400220 931..993 93 -> Minus
arm_2R 13400281..13400489 723..930 98 -> Minus
arm_2R 13400555..13401262 13..722 99   Minus

BS06867.5prime Sequence

914 bp (776 high quality bases) assembled on 2005-12-04

> BS06867.5prime
GAAGTTATCAGTCGACATGAAGCTTCTGTTGGTTCTTCCACTTCTGGTGG
CTGTGGTCTCTGGCCAGGGATTCGGAGGCGGTGGATTTGGAGGCGGATTT
GGAGGTGGACTCGGAGGCGGATTTGGAGGTGGACTCGGAGGCTTGGGCAA
CAATCGAGTGGGTGGAGCTTTACAAAATGTGGCCGGCGCCGTTCAGAATG
CCGTGGGCAACATTGCCAAGGCTGTGCCCAAGGTGCCGCTGCTCTCAAAC
GTCCAGGACTTTGGTGACTTCTTGAGCCAATCTGGAAAGACCTATCTCTC
CGCCGCTGATCGCGCTCTTCATGAAGGTGCCTTCGCTTCCACCAAGAACC
TGGTGGAAGCCGGAAACGCAGCCTTTGCCCAAGGAGTGCACACCTTCAAG
CAGGCCGTGAACGCCTTCGCCGATCTGACCCACTCTGAGTTCCTTAGTCA
ATTGACCGGTCTGAAGAGAAGTCCGGAGGCTAAGGCTCGAGCTGCTGCCA
GTTTGAAGTTGGTCAACCTGCCTGCGAAGCCCATCCCGGATGCCTTCGAT
TGGCGCGAGCATGGCGGTGTCACACCAGTCAAATTCCAGGGTACCTGTGG
CTCCTGTTGGGCCTTTGCCACCACTGGTGCCATTGAGGGACACACCTTCC
GCAAGACCGGCAGCCTGCCCAATCTCTCTGAGCAGAATCTGGTCGACTGT
GGTCCGGTGGAGGACTTTGGCCTGAATGGCTGCGATGGTGGCTTCCAGGA
GGCCGCATTCTGTTTCATCGATGAGGTGCAAAAGGGTGTGTCCCAGGAGG
GGGCCTATCCCTACATTGACAACAAGGGCACGTGCAAGTACGATGGCAGN
CAGTCCGGAGCCACCCTCCAGGGATCGCCGCTATTCCGCCCAGGACGAGG
AGCAGCTGAAGAAG

BS06867.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4847-PA 1173 CG4847-RA 1..859 17..875 4251 99.7 Plus
CG4847-PC 1173 CG4847-RC 1..859 17..875 4251 99.7 Plus
CG4847-PD 1263 CG4847-RD 91..949 17..875 4251 99.7 Plus
CG4847-PB 1173 CG4847-RB 1..859 17..875 4251 99.7 Plus
CG4847-PE 1173 CG4847-RE 1..859 17..875 4251 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:00:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4847-RE 1308 CG4847-RE 36..935 17..914 4424 99.6 Plus
CG4847-RD 1501 CG4847-RD 229..1128 17..914 4424 99.6 Plus
CG4847-RC 1313 CG4847-RC 41..940 17..914 4424 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:00:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17513050..17513482 484..914 2039 99.1 Plus
2R 25286936 2R 17512458..17512715 17..274 1290 100 Plus
2R 25286936 2R 17512775..17512985 274..484 1055 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:00:09 has no hits.

BS06867.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:37 Download gff for BS06867.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4847-PA 1..900 17..914 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:19 Download gff for BS06867.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4847-PE 1..900 17..914 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:27:33 Download gff for BS06867.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4847-RC 35..940 7..914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:28:25 Download gff for BS06867.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4847-RC 35..940 7..914 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:28:25 Download gff for BS06867.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17512452..17512715 7..274 98 -> Plus
2R 17512776..17512984 275..483 100 -> Plus
2R 17513050..17513482 484..914 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:27:33 Download gff for BS06867.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13399957..13400220 7..274 98 -> Plus
arm_2R 13400281..13400489 275..483 100 -> Plus
arm_2R 13400555..13400987 484..914 99   Plus

BS06867.complete Sequence

1205 bp (1205 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635650

> BS06867.complete
GAAGTTATCAGTCGACATGAAGCTTCTGTTGGTTCTTCCACTTCTGGTGG
CTGTGGTCTCTGGCCAGGGATTCGGAGGCGGTGGATTTGGAGGCGGATTT
GGAGGTGGACTCGGAGGCGGATTTGGAGGTGGACTCGGAGGCTTGGGCAA
CAATCGAGTGGGTGGAGCTTTACAAAATGTGGCCGGCGCCGTTCAGAATG
CCGTGGGCAACATTGCCAAGGCTGTGCCCAAGGTGCCGCTGCTCTCAAAC
GTCCAGGACTTTGGTGACTTCTTGAGCCAATCTGGAAAGACCTATCTCTC
CGCCGCTGATCGCGCTCTTCATGAAGGTGCCTTCGCTTCCACCAAGAACC
TGGTGGAAGCCGGAAACGCAGCCTTTGCCCAAGGAGTGCACACCTTCAAG
CAGGCCGTGAACGCCTTCGCCGATCTGACCCACTCTGAGTTCCTTAGTCA
ATTGACCGGTCTGAAGAGAAGTCCGGAGGCTAAGGCTCGAGCTGCTGCCA
GTTTGAAGTTGGTCAACCTGCCTGCGAAGCCCATCCCGGATGCCTTCGAT
TGGCGCGAGCATGGCGGTGTCACACCAGTCAAATTCCAGGGTACCTGTGG
CTCCTGTTGGGCCTTTGCCACCACTGGTGCCATTGAGGGACACACCTTCC
GCAAGACCGGCAGCCTGCCCAATCTCTCTGAGCAGAATCTGGTCGACTGT
GGTCCGGTGGAGGACTTTGGCCTGAATGGCTGCGATGGTGGCTTCCAGGA
GGCCGCATTCTGTTTCATCGATGAGGTGCAAAAGGGTGTGTCCCAGGAGG
GGGCCTATCCCTACATTGACAACAAGGGCACGTGCAAGTACGATGGCAGC
AAGTCCGGAGCCACCCTCCAGGGATTCGCCGCTATTCCGCCCAAGGACGA
GGAGCAGCTGAAGAAGGTGGTGGCCACTCTGGGACCAGTTGCCTGTTCGG
TGAATGGTTTGGAGACTCTTAAGAACTACGCCGGTGGCATCTATAACGAC
GATGAGTGCAACAAGGGCGAGCCGAACCACTCCATTCTGGTCGTCGGTTA
CGGATCGGAGAAAGGACAGGATTACTGGATCGTCAAGAACTCCTGGGACG
ACACCTGGGGCGAAAAGGGCTACTTCCGCCTGCCTCGCGGCAAAAACTAC
TGCTTCATTGCTGAGGAGTGCTCCTATCCCGTGGTTTAAAAGCTTTCTAG
ACCAT

BS06867.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:13:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG4847-RE 1173 CG4847-PE 1..1173 17..1189 5865 100 Plus
CG4847-RD 1263 CG4847-PD 91..1263 17..1189 5865 100 Plus
CG4847-RC 1173 CG4847-PC 1..1173 17..1189 5865 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4847-RE 1308 CG4847-RE 36..1208 17..1189 5865 100 Plus
CG4847-RD 1501 CG4847-RD 229..1401 17..1189 5865 100 Plus
CG4847-RC 1313 CG4847-RC 41..1213 17..1189 5865 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17513050..17513755 484..1189 3530 100 Plus
2R 25286936 2R 17512458..17512715 17..274 1290 100 Plus
2R 25286936 2R 17512775..17512985 274..484 1055 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:13:10 has no hits.

BS06867.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:02 Download gff for BS06867.complete
Subject Subject Range Query Range Percent Splice Strand
CG4847-RD 85..1263 7..1189 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:44 Download gff for BS06867.complete
Subject Subject Range Query Range Percent Splice Strand
CG4847-RD 218..1398 7..1193 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:42:44 Download gff for BS06867.complete
Subject Subject Range Query Range Percent Splice Strand
CG4847-RC 41..1211 17..1187 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:02 Download gff for BS06867.complete
Subject Subject Range Query Range Percent Splice Strand
CG4847-RD 218..1398 7..1193 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:53 Download gff for BS06867.complete
Subject Subject Range Query Range Percent Splice Strand
CG4847-RC 41..1211 17..1187 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:53 Download gff for BS06867.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17512776..17512984 275..483 100 -> Plus
2R 17512458..17512715 17..274 100 -> Plus
2R 17513050..17513753 484..1187 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:42:44 Download gff for BS06867.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13400281..13400489 275..483 100 -> Plus
arm_2R 13399963..13400220 17..274 100 -> Plus
arm_2R 13400555..13401258 484..1187 100   Plus

BS06867.pep Sequence

Translation from 16 to 1188

> BS06867.pep
MKLLLVLPLLVAVVSGQGFGGGGFGGGFGGGLGGGFGGGLGGLGNNRVGG
ALQNVAGAVQNAVGNIAKAVPKVPLLSNVQDFGDFLSQSGKTYLSAADRA
LHEGAFASTKNLVEAGNAAFAQGVHTFKQAVNAFADLTHSEFLSQLTGLK
RSPEAKARAAASLKLVNLPAKPIPDAFDWREHGGVTPVKFQGTCGSCWAF
ATTGAIEGHTFRKTGSLPNLSEQNLVDCGPVEDFGLNGCDGGFQEAAFCF
IDEVQKGVSQEGAYPYIDNKGTCKYDGSKSGATLQGFAAIPPKDEEQLKK
VVATLGPVACSVNGLETLKNYAGGIYNDDECNKGEPNHSILVVGYGSEKG
QDYWIVKNSWDDTWGEKGYFRLPRGKNYCFIAEECSYPVV*

BS06867.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG4847-PE 390 CG4847-PE 1..390 1..390 2081 100 Plus
CG4847-PC 390 CG4847-PC 1..390 1..390 2081 100 Plus
CG4847-PA 390 CG4847-PA 1..390 1..390 2081 100 Plus
CG4847-PD 420 CG4847-PD 31..420 1..390 2081 100 Plus
CG6347-PA 352 CG6347-PA 30..352 74..390 733 46.2 Plus