Clone Sequence Records
BS06867.3prime Sequence
993 bp (769 high quality bases) assembled on 2005-12-04
> BS06867.3prime
ATGGTCTAGAAAGCTTTTAAACCACGGGATAGGAGCACTCCTCAGCAATG
AAGCAGTAGTTTTTGCCGCGAGGCAGGCGGAAGTAGCCCTTTTCGCCCCA
GGTGTCGTCCCAGGAGTTCTTGACGATCCAGTAATCCTGTCCTTTCTCCG
ATCCGTAACCGACGACCAGAATGGAGTGGTTCGGCTCGCCCTTGTTGCAC
TCATCGTCGTTATAGATGCCACCGGCGTAGTTCTTAAGAGTCTCCAAACC
ATTCACCGAACAGGCAACTGGTCCCAGAGTGGCCACCACCTTCTTCAGCT
GCTCCTCGTCCTTGGGCGGAATAGCGGCGAATCCCTGGAGGGTGGCTCCG
GACTTGCTGCCATCGTACTTGCACGTGCCCTTGTTGTCAATGTAGGGATA
GGCCCCCTCCTGGGACACACCCTTTTGCACCTCATCGATGAAACAGAATG
CGGCCTCCTGGAAGCCACCATCGCAGCCATTCAGGCCAAAGTCCTCCACC
GGACCACAGTCGACCAGATTCTGCTCAGAGAGATTGGGCAGGCTGCCGGT
CTTGCGGAAGGTGTGTCCCTCAATGGCACCAGTGGTGGCAAAGGCCCAAC
AGGAGCCACAGGTACCCTGGAATTTGACTGGTGTGACACCGCCATGCTCG
CGCCAATCGAAGGCATCCGGGATGGGCTTCGCAGGCAGGTTGACCAACTT
CAAACTGGCAGCAGCTCGAGCCTTAGCCTCCGGACTTCTCTTCAGACCGG
TCAATTGACTAAGGAACTCAGAGTGGGTCAGATCGGCGAANGCGTTCACG
GCCTGCTTGAAGGTGTGCACTCCTTGGGCAAAGGCTGCGTTTCCGGCTTC
ACCAGGTTCTTGGTGGAAGCGAAGGCACCTTCATGAAGAGCGCGATCAGC
GGCGGAGAGATAGGTCTTTCCAGATGGGCTCAAGAAGTCACCAAAGTCCT
GGACGTTTGAGAGCAGCGGCACCTGGGGCACAGGCCTGGGCAT
BS06867.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4847-PA | 1173 | CG4847-RA | 340..1173 | 850..17 | 4151 | 99.8 | Minus |
CG4847-PC | 1173 | CG4847-RC | 340..1173 | 850..17 | 4151 | 99.8 | Minus |
CG4847-PD | 1263 | CG4847-RD | 430..1263 | 850..17 | 4151 | 99.8 | Minus |
CG4847-PB | 1173 | CG4847-RB | 340..1173 | 850..17 | 4151 | 99.8 | Minus |
CG4847-PE | 1173 | CG4847-RE | 340..1173 | 850..17 | 4151 | 99.8 | Minus |
CG4847-PA | 1173 | CG4847-RA | 206..339 | 983..850 | 620 | 98.5 | Minus |
CG4847-PC | 1173 | CG4847-RC | 206..339 | 983..850 | 620 | 98.5 | Minus |
CG4847-PD | 1263 | CG4847-RD | 296..429 | 983..850 | 620 | 98.5 | Minus |
CG4847-PB | 1173 | CG4847-RB | 206..339 | 983..850 | 620 | 98.5 | Minus |
CG4847-PE | 1173 | CG4847-RE | 206..339 | 983..850 | 620 | 98.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:43:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4847-RE | 1308 | CG4847-RE | 233..1208 | 992..17 | 4779 | 99.4 | Minus |
CG4847-RD | 1501 | CG4847-RD | 426..1401 | 992..17 | 4779 | 99.4 | Minus |
CG4847-RC | 1313 | CG4847-RC | 238..1213 | 992..17 | 4779 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:43:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17513050..17513755 | 722..17 | 3530 | 100 | Minus |
2R | 25286936 | 2R | 17512775..17512985 | 931..722 | 979 | 98.6 | Minus |
2R | 25286936 | 2R | 17512663..17512715 | 983..931 | 250 | 98.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:43:38 has no hits.
BS06867.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:36 Download gff for
BS06867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4847-PD | 286..1263 | 17..993 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:19 Download gff for
BS06867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4847-PC | 196..1173 | 17..993 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:57:06 Download gff for
BS06867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4847-RC | 236..1215 | 13..993 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:14:19 Download gff for
BS06867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4847-RC | 236..1215 | 13..993 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:14:19 Download gff for
BS06867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17512653..17512715 | 931..993 | 93 | -> | Minus |
2R | 17512776..17512984 | 723..930 | 98 | -> | Minus |
2R | 17513050..17513757 | 13..722 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:57:06 Download gff for
BS06867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13400158..13400220 | 931..993 | 93 | -> | Minus |
arm_2R | 13400281..13400489 | 723..930 | 98 | -> | Minus |
arm_2R | 13400555..13401262 | 13..722 | 99 | | Minus |
BS06867.5prime Sequence
914 bp (776 high quality bases) assembled on 2005-12-04
> BS06867.5prime
GAAGTTATCAGTCGACATGAAGCTTCTGTTGGTTCTTCCACTTCTGGTGG
CTGTGGTCTCTGGCCAGGGATTCGGAGGCGGTGGATTTGGAGGCGGATTT
GGAGGTGGACTCGGAGGCGGATTTGGAGGTGGACTCGGAGGCTTGGGCAA
CAATCGAGTGGGTGGAGCTTTACAAAATGTGGCCGGCGCCGTTCAGAATG
CCGTGGGCAACATTGCCAAGGCTGTGCCCAAGGTGCCGCTGCTCTCAAAC
GTCCAGGACTTTGGTGACTTCTTGAGCCAATCTGGAAAGACCTATCTCTC
CGCCGCTGATCGCGCTCTTCATGAAGGTGCCTTCGCTTCCACCAAGAACC
TGGTGGAAGCCGGAAACGCAGCCTTTGCCCAAGGAGTGCACACCTTCAAG
CAGGCCGTGAACGCCTTCGCCGATCTGACCCACTCTGAGTTCCTTAGTCA
ATTGACCGGTCTGAAGAGAAGTCCGGAGGCTAAGGCTCGAGCTGCTGCCA
GTTTGAAGTTGGTCAACCTGCCTGCGAAGCCCATCCCGGATGCCTTCGAT
TGGCGCGAGCATGGCGGTGTCACACCAGTCAAATTCCAGGGTACCTGTGG
CTCCTGTTGGGCCTTTGCCACCACTGGTGCCATTGAGGGACACACCTTCC
GCAAGACCGGCAGCCTGCCCAATCTCTCTGAGCAGAATCTGGTCGACTGT
GGTCCGGTGGAGGACTTTGGCCTGAATGGCTGCGATGGTGGCTTCCAGGA
GGCCGCATTCTGTTTCATCGATGAGGTGCAAAAGGGTGTGTCCCAGGAGG
GGGCCTATCCCTACATTGACAACAAGGGCACGTGCAAGTACGATGGCAGN
CAGTCCGGAGCCACCCTCCAGGGATCGCCGCTATTCCGCCCAGGACGAGG
AGCAGCTGAAGAAG
BS06867.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4847-PA | 1173 | CG4847-RA | 1..859 | 17..875 | 4251 | 99.7 | Plus |
CG4847-PC | 1173 | CG4847-RC | 1..859 | 17..875 | 4251 | 99.7 | Plus |
CG4847-PD | 1263 | CG4847-RD | 91..949 | 17..875 | 4251 | 99.7 | Plus |
CG4847-PB | 1173 | CG4847-RB | 1..859 | 17..875 | 4251 | 99.7 | Plus |
CG4847-PE | 1173 | CG4847-RE | 1..859 | 17..875 | 4251 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:00:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4847-RE | 1308 | CG4847-RE | 36..935 | 17..914 | 4424 | 99.6 | Plus |
CG4847-RD | 1501 | CG4847-RD | 229..1128 | 17..914 | 4424 | 99.6 | Plus |
CG4847-RC | 1313 | CG4847-RC | 41..940 | 17..914 | 4424 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:00:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17513050..17513482 | 484..914 | 2039 | 99.1 | Plus |
2R | 25286936 | 2R | 17512458..17512715 | 17..274 | 1290 | 100 | Plus |
2R | 25286936 | 2R | 17512775..17512985 | 274..484 | 1055 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:00:09 has no hits.
BS06867.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:37 Download gff for
BS06867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4847-PA | 1..900 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:19 Download gff for
BS06867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4847-PE | 1..900 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:27:33 Download gff for
BS06867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4847-RC | 35..940 | 7..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:28:25 Download gff for
BS06867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4847-RC | 35..940 | 7..914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:28:25 Download gff for
BS06867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17512452..17512715 | 7..274 | 98 | -> | Plus |
2R | 17512776..17512984 | 275..483 | 100 | -> | Plus |
2R | 17513050..17513482 | 484..914 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:27:33 Download gff for
BS06867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13399957..13400220 | 7..274 | 98 | -> | Plus |
arm_2R | 13400281..13400489 | 275..483 | 100 | -> | Plus |
arm_2R | 13400555..13400987 | 484..914 | 99 | | Plus |
BS06867.complete Sequence
1205 bp (1205 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635650
> BS06867.complete
GAAGTTATCAGTCGACATGAAGCTTCTGTTGGTTCTTCCACTTCTGGTGG
CTGTGGTCTCTGGCCAGGGATTCGGAGGCGGTGGATTTGGAGGCGGATTT
GGAGGTGGACTCGGAGGCGGATTTGGAGGTGGACTCGGAGGCTTGGGCAA
CAATCGAGTGGGTGGAGCTTTACAAAATGTGGCCGGCGCCGTTCAGAATG
CCGTGGGCAACATTGCCAAGGCTGTGCCCAAGGTGCCGCTGCTCTCAAAC
GTCCAGGACTTTGGTGACTTCTTGAGCCAATCTGGAAAGACCTATCTCTC
CGCCGCTGATCGCGCTCTTCATGAAGGTGCCTTCGCTTCCACCAAGAACC
TGGTGGAAGCCGGAAACGCAGCCTTTGCCCAAGGAGTGCACACCTTCAAG
CAGGCCGTGAACGCCTTCGCCGATCTGACCCACTCTGAGTTCCTTAGTCA
ATTGACCGGTCTGAAGAGAAGTCCGGAGGCTAAGGCTCGAGCTGCTGCCA
GTTTGAAGTTGGTCAACCTGCCTGCGAAGCCCATCCCGGATGCCTTCGAT
TGGCGCGAGCATGGCGGTGTCACACCAGTCAAATTCCAGGGTACCTGTGG
CTCCTGTTGGGCCTTTGCCACCACTGGTGCCATTGAGGGACACACCTTCC
GCAAGACCGGCAGCCTGCCCAATCTCTCTGAGCAGAATCTGGTCGACTGT
GGTCCGGTGGAGGACTTTGGCCTGAATGGCTGCGATGGTGGCTTCCAGGA
GGCCGCATTCTGTTTCATCGATGAGGTGCAAAAGGGTGTGTCCCAGGAGG
GGGCCTATCCCTACATTGACAACAAGGGCACGTGCAAGTACGATGGCAGC
AAGTCCGGAGCCACCCTCCAGGGATTCGCCGCTATTCCGCCCAAGGACGA
GGAGCAGCTGAAGAAGGTGGTGGCCACTCTGGGACCAGTTGCCTGTTCGG
TGAATGGTTTGGAGACTCTTAAGAACTACGCCGGTGGCATCTATAACGAC
GATGAGTGCAACAAGGGCGAGCCGAACCACTCCATTCTGGTCGTCGGTTA
CGGATCGGAGAAAGGACAGGATTACTGGATCGTCAAGAACTCCTGGGACG
ACACCTGGGGCGAAAAGGGCTACTTCCGCCTGCCTCGCGGCAAAAACTAC
TGCTTCATTGCTGAGGAGTGCTCCTATCCCGTGGTTTAAAAGCTTTCTAG
ACCAT
BS06867.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:13:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4847-RE | 1173 | CG4847-PE | 1..1173 | 17..1189 | 5865 | 100 | Plus |
CG4847-RD | 1263 | CG4847-PD | 91..1263 | 17..1189 | 5865 | 100 | Plus |
CG4847-RC | 1173 | CG4847-PC | 1..1173 | 17..1189 | 5865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4847-RE | 1308 | CG4847-RE | 36..1208 | 17..1189 | 5865 | 100 | Plus |
CG4847-RD | 1501 | CG4847-RD | 229..1401 | 17..1189 | 5865 | 100 | Plus |
CG4847-RC | 1313 | CG4847-RC | 41..1213 | 17..1189 | 5865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17513050..17513755 | 484..1189 | 3530 | 100 | Plus |
2R | 25286936 | 2R | 17512458..17512715 | 17..274 | 1290 | 100 | Plus |
2R | 25286936 | 2R | 17512775..17512985 | 274..484 | 1055 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:13:10 has no hits.
BS06867.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:02 Download gff for
BS06867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4847-RD | 85..1263 | 7..1189 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:44 Download gff for
BS06867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4847-RD | 218..1398 | 7..1193 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:42:44 Download gff for
BS06867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4847-RC | 41..1211 | 17..1187 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:02 Download gff for
BS06867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4847-RD | 218..1398 | 7..1193 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:53 Download gff for
BS06867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4847-RC | 41..1211 | 17..1187 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:53 Download gff for
BS06867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17512776..17512984 | 275..483 | 100 | -> | Plus |
2R | 17512458..17512715 | 17..274 | 100 | -> | Plus |
2R | 17513050..17513753 | 484..1187 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:42:44 Download gff for
BS06867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13400281..13400489 | 275..483 | 100 | -> | Plus |
arm_2R | 13399963..13400220 | 17..274 | 100 | -> | Plus |
arm_2R | 13400555..13401258 | 484..1187 | 100 | | Plus |
BS06867.pep Sequence
Translation from 16 to 1188
> BS06867.pep
MKLLLVLPLLVAVVSGQGFGGGGFGGGFGGGLGGGFGGGLGGLGNNRVGG
ALQNVAGAVQNAVGNIAKAVPKVPLLSNVQDFGDFLSQSGKTYLSAADRA
LHEGAFASTKNLVEAGNAAFAQGVHTFKQAVNAFADLTHSEFLSQLTGLK
RSPEAKARAAASLKLVNLPAKPIPDAFDWREHGGVTPVKFQGTCGSCWAF
ATTGAIEGHTFRKTGSLPNLSEQNLVDCGPVEDFGLNGCDGGFQEAAFCF
IDEVQKGVSQEGAYPYIDNKGTCKYDGSKSGATLQGFAAIPPKDEEQLKK
VVATLGPVACSVNGLETLKNYAGGIYNDDECNKGEPNHSILVVGYGSEKG
QDYWIVKNSWDDTWGEKGYFRLPRGKNYCFIAEECSYPVV*
BS06867.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4847-PE | 390 | CG4847-PE | 1..390 | 1..390 | 2081 | 100 | Plus |
CG4847-PC | 390 | CG4847-PC | 1..390 | 1..390 | 2081 | 100 | Plus |
CG4847-PA | 390 | CG4847-PA | 1..390 | 1..390 | 2081 | 100 | Plus |
CG4847-PD | 420 | CG4847-PD | 31..420 | 1..390 | 2081 | 100 | Plus |
CG6347-PA | 352 | CG6347-PA | 30..352 | 74..390 | 733 | 46.2 | Plus |