Clone Sequence Records
BS06869.3prime Sequence
910 bp (858 high quality bases) assembled on 2005-12-04
> BS06869.3prime
ATGGTCTAGAAAGCTTCTACAGCTTGGACTTGAGCGCCTTCATTAGCTTC
TCCAGCTTGAGAGCCTTCTGGAAATCGCCGCTGATCTTCAGCTTGCCGGT
CATGTAGGCGGGAGCCGCCTTCAGTTTACCCGAGAACATGTCGAAGAAGT
TCTTCGAGTTCATGGTGAGCGTGGCGTCGGGAGCGGCAGTTGGCGTTCCG
GCACCGCAGGATCCGGAGCCGTTCTTCAGGTCCAGGAACCAGGTGCCCTG
CTCGGCGCCGCTGATGTTGAACTGGAAGACAGCCTGCGTCTTCGAGACGA
TCTCGGGCGAGAGGAGAGATTCGATTTTCCGGAACAGCTGCGGAATCTTG
ACGTCTCCTCCACTTGCGGGAGCAGCAGCATCTTCTGCCGCAGCTTCATT
CTCTACCGGAGCTCCCTTCTCCTCCACGAAGAAGTCCACCATCAGCTTGT
CGGCGTTCTCGCGGAAGCAGGCGTATTCGGTGAGATCAGTGATGCCCGCC
GATTCCAGCACCTCGTCGTCCACAAAGAACTGACCAGTAGACTGCCTGGG
CTCACGGGTCAGGATTGCGTAGGCGGCATCGGCCATGATCTCCGGCTTGC
GTGACCACTTGGCGGAATCTGGACCCGTCAGCATCTCGATGGCCGCCGTG
TGAATGGCAGTGCGCGGCCACAGAGCGTTGACGGAGATTCCCTCGTCCTT
GAACTCCGCGGCCATGCCGAGCACACACATGGACATACCGTACTTGGCCA
TGGTGTAGGCCACATGCGGGCCAAACCACTTGGGCTTCATGCTCAGCGGC
GGCGAGATGTTGAGAATGTGGGCGTGGTTGCTCTTCTTCAGGTACGGCAG
GCACACCTTGGACACCAGAAAGGTGCCTCGAGTATTGATGTTGTGCATCA
GGTCGTAGCG
BS06869.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5590-PA | 1239 | CG5590-RA | 346..1239 | 910..17 | 4470 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:12:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5590-RA | 1492 | CG5590-RA | 508..1401 | 910..17 | 4470 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:12:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27678029..27678922 | 910..17 | 4470 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:12:31 has no hits.
BS06869.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:40 Download gff for
BS06869.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5590-PA | 346..1239 | 17..910 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:24 Download gff for
BS06869.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5590-PA | 346..1239 | 17..910 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:02:24 Download gff for
BS06869.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5590-RA | 508..1401 | 17..910 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:43 Download gff for
BS06869.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5590-RA | 508..1401 | 17..910 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:43 Download gff for
BS06869.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27678029..27678922 | 17..910 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:02:24 Download gff for
BS06869.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23503751..23504644 | 17..910 | 100 | | Minus |
BS06869.5prime Sequence
909 bp (820 high quality bases) assembled on 2005-12-04
> BS06869.5prime
GAAGTTATCAGTCGACATGATCAACACAGGAAAACTAGCCGGACGGACCC
TGTTCATCACGGGAGCCTCTCGAGGAATTGGCAAGGAGATTGCTCTAAAG
GCGGCCCGCGATGGAGCCAACATTGTGGTGGCGGCCAAGACGGCGGAACC
GCATCCCAAGCTGCCGGGCACCATCTACTCGGCTGCGGAGGAGATCGAGA
AGGCCGGCGGAAAGGCCTATCCCTGCGTTGTGGATGTGCGGGATGAGCAA
CAGGTGCGCAGCGCCGTTGAGGCCGCGGTGGCCAAGTTCGGTGGCATCGA
CATTGTGATCAATAACGCCAGCGCCATCTCGCTGACCAATACCCCGGATA
CGGACATGAAGCGCTACGACCTGATGCACAACATCAATACTCGAGGCACC
TTTCTGGTGTCCAAGGTGTGCCTGCCGTACCTGAAGAAGAGCAACCACGC
CCACATTCTCAACATCTCGCCGCCGCTGAGCATGAAGCCCAAGTGGTTTG
GCCCGCATGTGGCCTACACCATGGCCAAGTACGGTATGTCCATGTGTGTG
CTCGGCATGGCCGCGGAGTTCAAGGACGAGGGAATCTCCGTCAACGCTCT
GTGGCCGCGCACTGCCATTCACACGGCGGCCATCGAGATGCTGACGGGTC
CAGATTCCGCCAAGTGGTCACGCAAGCCGGAGATCATGGCCGATGCCGCC
TACGCAATCCTGACCCGTGAGCCCAGGCAGTCTACTGGTCAGTTCTTTGT
GGACGACGAGGTGCTGGAATCGGCGGGCATCACTGATCTCACCGAATACG
CCTGCTTCCGCGAGAACGCCGACNAGCTGATGGTGGACTTCTTCGTGGAG
GAGAAGGGAGCTCCGGTAGAGAATGAAGCTGCGGCAGAAGATGCTGCTGC
TCCCGCAAG
BS06869.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5590-PA | 1239 | CG5590-RA | 1..893 | 17..909 | 4446 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:27:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5590-RA | 1492 | CG5590-RA | 163..1055 | 17..909 | 4454 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:27:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27677684..27678576 | 17..909 | 4454 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:27:27 has no hits.
BS06869.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:41 Download gff for
BS06869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5590-PA | 1..893 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:26 Download gff for
BS06869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5590-PA | 1..893 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:10:40 Download gff for
BS06869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5590-RA | 159..1055 | 9..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:49:58 Download gff for
BS06869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5590-RA | 159..1055 | 9..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:49:58 Download gff for
BS06869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27677680..27678576 | 9..909 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:10:40 Download gff for
BS06869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23503402..23504298 | 9..909 | 99 | | Plus |
BS06869.complete Sequence
1271 bp (1271 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635651
> BS06869.complete
GAAGTTATCAGTCGACATGATCAACACAGGAAAACTAGCCGGACGGACCC
TGTTCATCACGGGAGCCTCTCGAGGAATTGGCAAGGAGATTGCTCTAAAG
GCGGCCCGCGATGGAGCCAACATTGTGGTGGCGGCCAAGACGGCGGAACC
GCATCCCAAGCTGCCGGGCACCATCTACTCGGCTGCGGAGGAGATCGAGA
AGGCCGGCGGAAAGGCCTATCCCTGCGTTGTGGATGTGCGGGATGAGCAA
CAGGTGCGCAGCGCCGTTGAGGCCGCGGTGGCCAAGTTCGGTGGCATCGA
CATTGTGATCAATAACGCCAGCGCCATCTCGCTGACCAATACCCCGGATA
CGGACATGAAGCGCTACGACCTGATGCACAACATCAATACTCGAGGCACC
TTTCTGGTGTCCAAGGTGTGCCTGCCGTACCTGAAGAAGAGCAACCACGC
CCACATTCTCAACATCTCGCCGCCGCTGAGCATGAAGCCCAAGTGGTTTG
GCCCGCATGTGGCCTACACCATGGCCAAGTACGGTATGTCCATGTGTGTG
CTCGGCATGGCCGCGGAGTTCAAGGACGAGGGAATCTCCGTCAACGCTCT
GTGGCCGCGCACTGCCATTCACACGGCGGCCATCGAGATGCTGACGGGTC
CAGATTCCGCCAAGTGGTCACGCAAGCCGGAGATCATGGCCGATGCCGCC
TACGCAATCCTGACCCGTGAGCCCAGGCAGTCTACTGGTCAGTTCTTTGT
GGACGACGAGGTGCTGGAATCGGCGGGCATCACTGATCTCACCGAATACG
CCTGCTTCCGCGAGAACGCCGACAAGCTGATGGTGGACTTCTTCGTGGAG
GAGAAGGGAGCTCCGGTAGAGAATGAAGCTGCGGCAGAAGATGCTGCTGC
TCCCGCAAGTGGAGGAGACGTCAAGATTCCGCAGCTGTTCCGGAAAATCG
AATCTCTCCTCTCGCCCGAGATCGTCTCGAAGACGCAGGCTGTCTTCCAG
TTCAACATCAGCGGCGCCGAGCAGGGCACCTGGTTCCTGGACCTGAAGAA
CGGCTCCGGATCCTGCGGTGCCGGAACGCCAACTGCCGCTCCCGACGCCA
CGCTCACCATGAACTCGAAGAACTTCTTCGACATGTTCTCGGGTAAACTG
AAGGCGGCTCCCGCCTACATGACCGGCAAGCTGAAGATCAGCGGCGATTT
CCAGAAGGCTCTCAAGCTGGAGAAGCTAATGAAGGCGCTCAAGTCCAAGC
TGTAGAAGCTTTCTAGACCAT
BS06869.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:04:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5590-RA | 1239 | CG5590-PA | 1..1239 | 17..1255 | 6195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5590-RA | 1492 | CG5590-RA | 163..1401 | 17..1255 | 6195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27677684..27678922 | 17..1255 | 6195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:04:58 has no hits.
BS06869.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:03 Download gff for
BS06869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5590-RA | 1..1239 | 17..1255 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:45 Download gff for
BS06869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5590-RA | 106..1348 | 9..1255 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:30 Download gff for
BS06869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5590-RA | 163..1401 | 17..1255 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:03 Download gff for
BS06869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5590-RA | 106..1348 | 9..1255 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:06 Download gff for
BS06869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5590-RA | 163..1401 | 17..1255 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:06 Download gff for
BS06869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27677684..27678922 | 17..1255 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:30 Download gff for
BS06869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23503406..23504644 | 17..1255 | 100 | | Plus |
BS06869.pep Sequence
Translation from 16 to 1254
> BS06869.pep
MINTGKLAGRTLFITGASRGIGKEIALKAARDGANIVVAAKTAEPHPKLP
GTIYSAAEEIEKAGGKAYPCVVDVRDEQQVRSAVEAAVAKFGGIDIVINN
ASAISLTNTPDTDMKRYDLMHNINTRGTFLVSKVCLPYLKKSNHAHILNI
SPPLSMKPKWFGPHVAYTMAKYGMSMCVLGMAAEFKDEGISVNALWPRTA
IHTAAIEMLTGPDSAKWSRKPEIMADAAYAILTREPRQSTGQFFVDDEVL
ESAGITDLTEYACFRENADKLMVDFFVEEKGAPVENEAAAEDAAAPASGG
DVKIPQLFRKIESLLSPEIVSKTQAVFQFNISGAEQGTWFLDLKNGSGSC
GAGTPTAAPDATLTMNSKNFFDMFSGKLKAAPAYMTGKLKISGDFQKALK
LEKLMKALKSKL*
BS06869.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5590-PA | 412 | CG5590-PA | 1..412 | 1..412 | 2109 | 100 | Plus |
| Mfe2-PB | 598 | CG3415-PB | 6..239 | 5..243 | 220 | 31.2 | Plus |
| Mfe2-PA | 598 | CG3415-PA | 6..239 | 5..243 | 220 | 31.2 | Plus |
| CG3699-PA | 251 | CG3699-PA | 3..179 | 7..197 | 209 | 30.4 | Plus |
| CG12171-PA | 257 | CG12171-PA | 7..189 | 10..201 | 196 | 26.9 | Plus |
