Clone BS06870 Report

Search the DGRC for BS06870

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:68
Well:70
Vector:pDNR-Dual
Associated Gene/Transcriptrau-RA
Protein status:BS06870.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06870.3prime Sequence

904 bp (819 high quality bases) assembled on 2005-12-04

> BS06870.3prime
ATGGTCTAGAAAGCTTCTACAGGTAGACAAAGTGTCCCAGTCCCTTGGCC
GGGTTGTTGTTGACGGCCTCCGCCGTGAGTTTGGTACTGGTATTGCCGTT
CATGTCCTGGGTCTCCGTCTCCGCCACAGGCATAAGTCTGCCGTAGACTC
CTCCGGACGCAAAGCGGGCGTTCATGTGGATGTCAAGCAGCTTCTTGTCC
TTCCCCAGCGAGGAGAAGGAGTGCGAGGCGGTTCGAATCTCGCGTATGTT
GTACACGGGGCTGTAGACTCGGGCGGGTGACACGGACACCGCCACTTGGG
GCACAACTGGAGCAGGAGCTGCGGGCGTGGTGTGGACGTAAAAGTCCCGG
CGTAGGGCACATTCTGTGGAATTATCCGAGGAGCCAGAACTGCTAGCACA
CTCGTCTTCATCCTCGGCATCCTCGCTGCTGCTGCAGCTTCGCAGATCCT
CGGAGAGCGACAGATCCGACTCCAAGGAGAGCTCCAGGAGACTGGTTGCA
TCCTCTGCCGCCTCCGCGGCCTGTCCAATTGCCTCGTTTAGGTTGGCCAA
CAGCTGGCGCCGGCGTGCGTAATTGGGCGTTCGGCGCACCAGGAAGTGAC
AGCCTTCGCCCCGCTTCATCCGCTCCATCTGAGTGCGCAGTGGAAGGTCG
TCCGGGTGCAATTTTCGCTGACACTCCTGGCCGGGACACACCTCGTACAG
CGAGAAGTTCTCGACCGGCTCGGGTGAACTGTAACAGCCGAGGAGCAGGT
GCAGCAGCTCGTCACAGGTGGTCTCCTCGCTGATGACCAGCGACTTGTAC
TGAGAGCTGGGCTGCAGCGCGGAGGTGTGGACGCGGATCAGGCCACCTGG
TTTTAGCTGCAGACAGAATCGGGACTCGCCCTTCGGATGACAGGCCTGCA
TGAT

BS06870.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8965-PA 1293 CG8965-RA 406..1293 904..17 4440 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:44:11
Subject Length Description Subject Range Query Range Score Percent Strand
rau-RB 2268 CG8965-RB 970..1857 904..17 4440 100 Minus
rau-RA 2215 CG8965-RA 917..1804 904..17 4440 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:44:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5860180..5861067 17..904 4440 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:44:09 has no hits.

BS06870.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:42 Download gff for BS06870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8965-PA 406..1293 17..904 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:27 Download gff for BS06870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8965-PA 406..1293 17..904 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:46:24 Download gff for BS06870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8965-RA 917..1809 11..904 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:10:25 Download gff for BS06870.3prime
Subject Subject Range Query Range Percent Splice Strand
rau-RA 917..1809 11..904 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:10:25 Download gff for BS06870.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5860186..5861067 23..904 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:46:24 Download gff for BS06870.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5860186..5861067 23..904 100   Plus

BS06870.5prime Sequence

902 bp (818 high quality bases) assembled on 2005-12-04

> BS06870.5prime
GAAGTTATCAGTCGACATGCTGAAGCACGTGCAAATCTCGCCGCTGCGAA
ATCGATCCGATTCGGTGTCCCTTCGCTCCTCCAGCCACGCCTCCTCGTGC
GCCAGCTCCATGTGCGGCAGTCCGGAGCCTCCGGCGGAGCTGCAGAGAAC
ACCCTCGAGGGCCTCCAGTTACTCCAGCCTCAACGAGCAGCTGCCACAGA
CCACAATCAAGGTGTACACAAACTGCCTGAAGATCGACATCGAGTACAAG
ACCCTTGGAATCCAGTGGGACACTACAAGCAAGGAGGTTATTGGCCAGCT
GCTAAGACGCCTCAAGATGCGACATCGCGATCCACGCCTGTTCTACCTAT
CCATGGAGGTAGCTGTGCGTCGGGCTGGAGTGAAGACCATCTTGGTGCTG
GACGACGACACCCGGCCGGCCATCATGCAGGCCTGTCATCCGAAGGGCGA
GTCCCGATTCTGTCTGCAGCTAAAACCAGGTGGCCTGATCCGCGTCCACA
CCTCCGCGCTGCAGCCCAGCTCTCAGTACAAGTCGCTGGTCATCAGCGAG
GAGACCACCTGTGACGAGCTGCTGCACCTGCTCCTCGGCTGTTACAGTTC
ACCCGAGCCGGTCGAGAACTTCTCGCTGTACGAGGTGTGTCCCGGCCAGG
AGTGTCAGCGAAAATTGCACCCGGACGACCTTCCACTGCGCACTCAGATG
GAGCGGATGAAGCGGGGCGAAGGCTGTCACTTCCTGGTGCGCCGAACGCC
CAATTACGCACGCCGGCGCCAGCTGTTGGCCAACCTAAACGAGGCAATTG
GACAGGCCGCGGAGGCGGCAGAGGATGCAACCAGTCTCCTGGAGCTCTCC
TTGGAGTCGGATCTGTCGCTCTCCGAGGATCTGCGAAGCTGCAGCAGCAG
CG

BS06870.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8965-PA 1293 CG8965-RA 1..886 17..902 4430 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:04:52
Subject Length Description Subject Range Query Range Score Percent Strand
rau-RB 2268 CG8965-RB 565..1450 17..902 4430 100 Plus
rau-RA 2215 CG8965-RA 512..1397 17..902 4430 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5860587..5861180 902..309 2970 100 Minus
2L 23513712 2L 5861425..5861607 199..17 915 100 Minus
2L 23513712 2L 5861252..5861367 309..194 580 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:04:49 has no hits.

BS06870.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:43 Download gff for BS06870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8965-PA 1..886 17..902 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:29 Download gff for BS06870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8965-PA 1..886 17..902 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:12:59 Download gff for BS06870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8965-RA 512..1397 17..902 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:39:34 Download gff for BS06870.5prime
Subject Subject Range Query Range Percent Splice Strand
rau-RA 512..1397 17..902 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:39:34 Download gff for BS06870.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5860587..5861179 310..902 100 <- Minus
2L 5861252..5861361 200..309 100 <- Minus
2L 5861425..5861607 17..199 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:12:59 Download gff for BS06870.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5860587..5861179 310..902 100 <- Minus
arm_2L 5861252..5861361 200..309 100 <- Minus
arm_2L 5861425..5861607 17..199 100   Minus

BS06870.complete Sequence

1325 bp (1325 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635652

> BS06870.complete
GAAGTTATCAGTCGACATGCTGAAGCACGTGCAAATCTCGCCGCTGCGAA
ATCGATCCGATTCGGTGTCCCTTCGCTCCTCCAGCCACGCCTCCTCGTGC
GCCAGCTCCATGTGCGGCAGTCCGGAGCCTCCGGCGGAGCTGCAGAGAAC
ACCCTCGAGGGCCTCCAGTTACTCCAGCCTCAACGAGCAGCTGCCACAGA
CCACAATCAAGGTGTACACAAACTGCCTGAAGATCGACATCGAGTACAAG
ACCCTTGGAATCCAGTGGGACACTACAAGCAAGGAGGTTATTGGCCAGCT
GCTAAGACGCCTCAAGATGCGACATCGCGATCCACGCCTGTTCTACCTAT
CCATGGAGGTAGCTGTGCGTCGGGCTGGAGTGAAGACCATCTTGGTGCTG
GACGACGACACCCGGCCGGCCATCATGCAGGCCTGTCATCCGAAGGGCGA
GTCCCGATTCTGTCTGCAGCTAAAACCAGGTGGCCTGATCCGCGTCCACA
CCTCCGCGCTGCAGCCCAGCTCTCAGTACAAGTCGCTGGTCATCAGCGAG
GAGACCACCTGTGACGAGCTGCTGCACCTGCTCCTCGGCTGTTACAGTTC
ACCCGAGCCGGTCGAGAACTTCTCGCTGTACGAGGTGTGTCCCGGCCAGG
AGTGTCAGCGAAAATTGCACCCGGACGACCTTCCACTGCGCACTCAGATG
GAGCGGATGAAGCGGGGCGAAGGCTGTCACTTCCTGGTGCGCCGAACGCC
CAATTACGCACGCCGGCGCCAGCTGTTGGCCAACCTAAACGAGGCAATTG
GACAGGCCGCGGAGGCGGCAGAGGATGCAACCAGTCTCCTGGAGCTCTCC
TTGGAGTCGGATCTGTCGCTCTCCGAGGATCTGCGAAGCTGCAGCAGCAG
CGAGGATGCCGAGGATGAAGACGAGTGTGCTAGCAGTTCTGGCTCCTCGG
ATAATTCCACAGAATGTGCCCTACGCCGGGACTTTTACGTCCACACCACG
CCCGCAGCTCCTGCTCCAGTTGTGCCCCAAGTGGCGGTGTCCGTGTCACC
CGCCCGAGTCTACAGCCCCGTGTACAACATACGCGAGATTCGAACCGCCT
CGCACTCCTTCTCCTCGCTGGGGAAGGACAAGAAGCTGCTTGACATCCAC
ATGAACGCCCGCTTTGCGTCCGGAGGAGTCTACGGCAGACTTATGCCTGT
GGCGGAGACGGAGACCCAGGACATGAACGGCAATACCAGTACCAAACTCA
CGGCGGAGGCCGTCAACAACAACCCGGCCAAGGGACTGGGACACTTTGTC
TACCTGTAGAAGCTTTCTAGACCAT

BS06870.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
rau-RB 1293 CG8965-PB 1..1293 17..1309 6465 100 Plus
rau-RA 1293 CG8965-PA 1..1293 17..1309 6465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
rau-RB 2268 CG8965-RB 565..1857 17..1309 6465 100 Plus
rau-RA 2215 CG8965-RA 512..1804 17..1309 6465 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5860180..5861180 1309..309 5005 100 Minus
2L 23513712 2L 5861425..5861607 199..17 915 100 Minus
2L 23513712 2L 5861252..5861367 309..194 580 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:34:30 has no hits.

BS06870.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:04 Download gff for BS06870.complete
Subject Subject Range Query Range Percent Splice Strand
CG8965-RA 1..1293 17..1309 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:47 Download gff for BS06870.complete
Subject Subject Range Query Range Percent Splice Strand
CG8965-RA 495..1792 17..1315 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:18:10 Download gff for BS06870.complete
Subject Subject Range Query Range Percent Splice Strand
CG8965-RA 512..1804 17..1309 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:04 Download gff for BS06870.complete
Subject Subject Range Query Range Percent Splice Strand
CG8965-RA 495..1792 17..1315 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:13:14 Download gff for BS06870.complete
Subject Subject Range Query Range Percent Splice Strand
rau-RA 512..1804 17..1309 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:13:14 Download gff for BS06870.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5860180..5861179 310..1309 100 <- Minus
2L 5861252..5861361 200..309 100 <- Minus
2L 5861425..5861607 17..199 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:18:10 Download gff for BS06870.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5860180..5861179 310..1309 100 <- Minus
arm_2L 5861252..5861361 200..309 100 <- Minus
arm_2L 5861425..5861607 17..199 100   Minus

BS06870.pep Sequence

Translation from 16 to 1308

> BS06870.pep
MLKHVQISPLRNRSDSVSLRSSSHASSCASSMCGSPEPPAELQRTPSRAS
SYSSLNEQLPQTTIKVYTNCLKIDIEYKTLGIQWDTTSKEVIGQLLRRLK
MRHRDPRLFYLSMEVAVRRAGVKTILVLDDDTRPAIMQACHPKGESRFCL
QLKPGGLIRVHTSALQPSSQYKSLVISEETTCDELLHLLLGCYSSPEPVE
NFSLYEVCPGQECQRKLHPDDLPLRTQMERMKRGEGCHFLVRRTPNYARR
RQLLANLNEAIGQAAEAAEDATSLLELSLESDLSLSEDLRSCSSSEDAED
EDECASSSGSSDNSTECALRRDFYVHTTPAAPAPVVPQVAVSVSPARVYS
PVYNIREIRTASHSFSSLGKDKKLLDIHMNARFASGGVYGRLMPVAETET
QDMNGNTSTKLTAEAVNNNPAKGLGHFVYL*

BS06870.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
rau-PB 430 CG8965-PB 1..430 1..430 2213 100 Plus
rau-PA 430 CG8965-PA 1..430 1..430 2213 100 Plus