Clone Sequence Records
BS06870.3prime Sequence
904 bp (819 high quality bases) assembled on 2005-12-04
> BS06870.3prime
ATGGTCTAGAAAGCTTCTACAGGTAGACAAAGTGTCCCAGTCCCTTGGCC
GGGTTGTTGTTGACGGCCTCCGCCGTGAGTTTGGTACTGGTATTGCCGTT
CATGTCCTGGGTCTCCGTCTCCGCCACAGGCATAAGTCTGCCGTAGACTC
CTCCGGACGCAAAGCGGGCGTTCATGTGGATGTCAAGCAGCTTCTTGTCC
TTCCCCAGCGAGGAGAAGGAGTGCGAGGCGGTTCGAATCTCGCGTATGTT
GTACACGGGGCTGTAGACTCGGGCGGGTGACACGGACACCGCCACTTGGG
GCACAACTGGAGCAGGAGCTGCGGGCGTGGTGTGGACGTAAAAGTCCCGG
CGTAGGGCACATTCTGTGGAATTATCCGAGGAGCCAGAACTGCTAGCACA
CTCGTCTTCATCCTCGGCATCCTCGCTGCTGCTGCAGCTTCGCAGATCCT
CGGAGAGCGACAGATCCGACTCCAAGGAGAGCTCCAGGAGACTGGTTGCA
TCCTCTGCCGCCTCCGCGGCCTGTCCAATTGCCTCGTTTAGGTTGGCCAA
CAGCTGGCGCCGGCGTGCGTAATTGGGCGTTCGGCGCACCAGGAAGTGAC
AGCCTTCGCCCCGCTTCATCCGCTCCATCTGAGTGCGCAGTGGAAGGTCG
TCCGGGTGCAATTTTCGCTGACACTCCTGGCCGGGACACACCTCGTACAG
CGAGAAGTTCTCGACCGGCTCGGGTGAACTGTAACAGCCGAGGAGCAGGT
GCAGCAGCTCGTCACAGGTGGTCTCCTCGCTGATGACCAGCGACTTGTAC
TGAGAGCTGGGCTGCAGCGCGGAGGTGTGGACGCGGATCAGGCCACCTGG
TTTTAGCTGCAGACAGAATCGGGACTCGCCCTTCGGATGACAGGCCTGCA
TGAT
BS06870.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8965-PA | 1293 | CG8965-RA | 406..1293 | 904..17 | 4440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:44:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rau-RB | 2268 | CG8965-RB | 970..1857 | 904..17 | 4440 | 100 | Minus |
rau-RA | 2215 | CG8965-RA | 917..1804 | 904..17 | 4440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:44:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5860180..5861067 | 17..904 | 4440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:44:09 has no hits.
BS06870.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:42 Download gff for
BS06870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8965-PA | 406..1293 | 17..904 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:27 Download gff for
BS06870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8965-PA | 406..1293 | 17..904 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:46:24 Download gff for
BS06870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8965-RA | 917..1809 | 11..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:10:25 Download gff for
BS06870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rau-RA | 917..1809 | 11..904 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:10:25 Download gff for
BS06870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5860186..5861067 | 23..904 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:46:24 Download gff for
BS06870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5860186..5861067 | 23..904 | 100 | | Plus |
BS06870.5prime Sequence
902 bp (818 high quality bases) assembled on 2005-12-04
> BS06870.5prime
GAAGTTATCAGTCGACATGCTGAAGCACGTGCAAATCTCGCCGCTGCGAA
ATCGATCCGATTCGGTGTCCCTTCGCTCCTCCAGCCACGCCTCCTCGTGC
GCCAGCTCCATGTGCGGCAGTCCGGAGCCTCCGGCGGAGCTGCAGAGAAC
ACCCTCGAGGGCCTCCAGTTACTCCAGCCTCAACGAGCAGCTGCCACAGA
CCACAATCAAGGTGTACACAAACTGCCTGAAGATCGACATCGAGTACAAG
ACCCTTGGAATCCAGTGGGACACTACAAGCAAGGAGGTTATTGGCCAGCT
GCTAAGACGCCTCAAGATGCGACATCGCGATCCACGCCTGTTCTACCTAT
CCATGGAGGTAGCTGTGCGTCGGGCTGGAGTGAAGACCATCTTGGTGCTG
GACGACGACACCCGGCCGGCCATCATGCAGGCCTGTCATCCGAAGGGCGA
GTCCCGATTCTGTCTGCAGCTAAAACCAGGTGGCCTGATCCGCGTCCACA
CCTCCGCGCTGCAGCCCAGCTCTCAGTACAAGTCGCTGGTCATCAGCGAG
GAGACCACCTGTGACGAGCTGCTGCACCTGCTCCTCGGCTGTTACAGTTC
ACCCGAGCCGGTCGAGAACTTCTCGCTGTACGAGGTGTGTCCCGGCCAGG
AGTGTCAGCGAAAATTGCACCCGGACGACCTTCCACTGCGCACTCAGATG
GAGCGGATGAAGCGGGGCGAAGGCTGTCACTTCCTGGTGCGCCGAACGCC
CAATTACGCACGCCGGCGCCAGCTGTTGGCCAACCTAAACGAGGCAATTG
GACAGGCCGCGGAGGCGGCAGAGGATGCAACCAGTCTCCTGGAGCTCTCC
TTGGAGTCGGATCTGTCGCTCTCCGAGGATCTGCGAAGCTGCAGCAGCAG
CG
BS06870.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8965-PA | 1293 | CG8965-RA | 1..886 | 17..902 | 4430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:04:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rau-RB | 2268 | CG8965-RB | 565..1450 | 17..902 | 4430 | 100 | Plus |
rau-RA | 2215 | CG8965-RA | 512..1397 | 17..902 | 4430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:04:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5860587..5861180 | 902..309 | 2970 | 100 | Minus |
2L | 23513712 | 2L | 5861425..5861607 | 199..17 | 915 | 100 | Minus |
2L | 23513712 | 2L | 5861252..5861367 | 309..194 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:04:49 has no hits.
BS06870.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:43 Download gff for
BS06870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8965-PA | 1..886 | 17..902 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:29 Download gff for
BS06870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8965-PA | 1..886 | 17..902 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:12:59 Download gff for
BS06870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8965-RA | 512..1397 | 17..902 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:39:34 Download gff for
BS06870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rau-RA | 512..1397 | 17..902 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:39:34 Download gff for
BS06870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5860587..5861179 | 310..902 | 100 | <- | Minus |
2L | 5861252..5861361 | 200..309 | 100 | <- | Minus |
2L | 5861425..5861607 | 17..199 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:12:59 Download gff for
BS06870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5860587..5861179 | 310..902 | 100 | <- | Minus |
arm_2L | 5861252..5861361 | 200..309 | 100 | <- | Minus |
arm_2L | 5861425..5861607 | 17..199 | 100 | | Minus |
BS06870.complete Sequence
1325 bp (1325 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635652
> BS06870.complete
GAAGTTATCAGTCGACATGCTGAAGCACGTGCAAATCTCGCCGCTGCGAA
ATCGATCCGATTCGGTGTCCCTTCGCTCCTCCAGCCACGCCTCCTCGTGC
GCCAGCTCCATGTGCGGCAGTCCGGAGCCTCCGGCGGAGCTGCAGAGAAC
ACCCTCGAGGGCCTCCAGTTACTCCAGCCTCAACGAGCAGCTGCCACAGA
CCACAATCAAGGTGTACACAAACTGCCTGAAGATCGACATCGAGTACAAG
ACCCTTGGAATCCAGTGGGACACTACAAGCAAGGAGGTTATTGGCCAGCT
GCTAAGACGCCTCAAGATGCGACATCGCGATCCACGCCTGTTCTACCTAT
CCATGGAGGTAGCTGTGCGTCGGGCTGGAGTGAAGACCATCTTGGTGCTG
GACGACGACACCCGGCCGGCCATCATGCAGGCCTGTCATCCGAAGGGCGA
GTCCCGATTCTGTCTGCAGCTAAAACCAGGTGGCCTGATCCGCGTCCACA
CCTCCGCGCTGCAGCCCAGCTCTCAGTACAAGTCGCTGGTCATCAGCGAG
GAGACCACCTGTGACGAGCTGCTGCACCTGCTCCTCGGCTGTTACAGTTC
ACCCGAGCCGGTCGAGAACTTCTCGCTGTACGAGGTGTGTCCCGGCCAGG
AGTGTCAGCGAAAATTGCACCCGGACGACCTTCCACTGCGCACTCAGATG
GAGCGGATGAAGCGGGGCGAAGGCTGTCACTTCCTGGTGCGCCGAACGCC
CAATTACGCACGCCGGCGCCAGCTGTTGGCCAACCTAAACGAGGCAATTG
GACAGGCCGCGGAGGCGGCAGAGGATGCAACCAGTCTCCTGGAGCTCTCC
TTGGAGTCGGATCTGTCGCTCTCCGAGGATCTGCGAAGCTGCAGCAGCAG
CGAGGATGCCGAGGATGAAGACGAGTGTGCTAGCAGTTCTGGCTCCTCGG
ATAATTCCACAGAATGTGCCCTACGCCGGGACTTTTACGTCCACACCACG
CCCGCAGCTCCTGCTCCAGTTGTGCCCCAAGTGGCGGTGTCCGTGTCACC
CGCCCGAGTCTACAGCCCCGTGTACAACATACGCGAGATTCGAACCGCCT
CGCACTCCTTCTCCTCGCTGGGGAAGGACAAGAAGCTGCTTGACATCCAC
ATGAACGCCCGCTTTGCGTCCGGAGGAGTCTACGGCAGACTTATGCCTGT
GGCGGAGACGGAGACCCAGGACATGAACGGCAATACCAGTACCAAACTCA
CGGCGGAGGCCGTCAACAACAACCCGGCCAAGGGACTGGGACACTTTGTC
TACCTGTAGAAGCTTTCTAGACCAT
BS06870.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:34:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rau-RB | 1293 | CG8965-PB | 1..1293 | 17..1309 | 6465 | 100 | Plus |
rau-RA | 1293 | CG8965-PA | 1..1293 | 17..1309 | 6465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:34:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rau-RB | 2268 | CG8965-RB | 565..1857 | 17..1309 | 6465 | 100 | Plus |
rau-RA | 2215 | CG8965-RA | 512..1804 | 17..1309 | 6465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:34:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5860180..5861180 | 1309..309 | 5005 | 100 | Minus |
2L | 23513712 | 2L | 5861425..5861607 | 199..17 | 915 | 100 | Minus |
2L | 23513712 | 2L | 5861252..5861367 | 309..194 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:34:30 has no hits.
BS06870.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:04 Download gff for
BS06870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8965-RA | 1..1293 | 17..1309 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:47 Download gff for
BS06870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8965-RA | 495..1792 | 17..1315 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:18:10 Download gff for
BS06870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8965-RA | 512..1804 | 17..1309 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:04 Download gff for
BS06870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8965-RA | 495..1792 | 17..1315 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:13:14 Download gff for
BS06870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rau-RA | 512..1804 | 17..1309 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:13:14 Download gff for
BS06870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5860180..5861179 | 310..1309 | 100 | <- | Minus |
2L | 5861252..5861361 | 200..309 | 100 | <- | Minus |
2L | 5861425..5861607 | 17..199 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:18:10 Download gff for
BS06870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5860180..5861179 | 310..1309 | 100 | <- | Minus |
arm_2L | 5861252..5861361 | 200..309 | 100 | <- | Minus |
arm_2L | 5861425..5861607 | 17..199 | 100 | | Minus |
BS06870.pep Sequence
Translation from 16 to 1308
> BS06870.pep
MLKHVQISPLRNRSDSVSLRSSSHASSCASSMCGSPEPPAELQRTPSRAS
SYSSLNEQLPQTTIKVYTNCLKIDIEYKTLGIQWDTTSKEVIGQLLRRLK
MRHRDPRLFYLSMEVAVRRAGVKTILVLDDDTRPAIMQACHPKGESRFCL
QLKPGGLIRVHTSALQPSSQYKSLVISEETTCDELLHLLLGCYSSPEPVE
NFSLYEVCPGQECQRKLHPDDLPLRTQMERMKRGEGCHFLVRRTPNYARR
RQLLANLNEAIGQAAEAAEDATSLLELSLESDLSLSEDLRSCSSSEDAED
EDECASSSGSSDNSTECALRRDFYVHTTPAAPAPVVPQVAVSVSPARVYS
PVYNIREIRTASHSFSSLGKDKKLLDIHMNARFASGGVYGRLMPVAETET
QDMNGNTSTKLTAEAVNNNPAKGLGHFVYL*
BS06870.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rau-PB | 430 | CG8965-PB | 1..430 | 1..430 | 2213 | 100 | Plus |
rau-PA | 430 | CG8965-PA | 1..430 | 1..430 | 2213 | 100 | Plus |