Clone BS06871 Report

Search the DGRC for BS06871

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:68
Well:71
Vector:pDNR-Dual
Associated Gene/Transcriptp47-RA
Protein status:BS06871.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06871.3prime Sequence

959 bp (811 high quality bases) assembled on 2005-12-04

> BS06871.3prime
ATGGTCTAGAAAGCTTTTACTTGAGGCGCTGCATGAGTGCCGCGTTCTTG
AGGCCAGCCTTCTCGATGGTGGAATTGTCGTCGCTCAGCTCGCGAGTGGG
GAACGAGGACACCAGGATGAAATTACTAGTTGAGTACTGAGGGCGTGCAG
TTTGTATGAAACGACGAATGTCGGAGACGGTGTGCGAAAGATTAAACTGC
GCAGCTAGACGCGAACCGTCCGCTAGGCGAATCTGCAGCGTAGTGGACGG
TGCTTCGGAATTTAAGTTAATGGCATCACGGGCACTAGCCTCCTGGTTTG
CAGCCTCACCGGGCGACAATGCCACTGGAACTGTTGGCGCTTCCGTGACC
AAATTGGCCACGGGACTGCCCAGCTTCTGGCCCGATCCCTTAAAAGTCTG
CGGAACTGGCTGACGTTTGAAGTCCTCGTGGCGGTGGTCCTCCACATCCA
CATTGACCATGCGCCCCATTTCCAGCAGCTCTTGCGGAATTTCCCCGCGC
ATGACAGTCTCTAGGAATTCCTTATTCTGCGGATCGTCATAGTGACGAAG
CTCACCGCCATCGATGGAGAAGCCCTGGCTCCAGAGCTTTAGCACCACCA
CCGGCTTGTTTTCGATGGTCGCAGCCGGTTTTTTGGTGCCCACAGCCGTG
TGGTCATTATCGGTCATGCCCAGCCGCATGCCTTGGCCCCAGACGGCACC
GCCAGATCCTCCGCTGGCACTGCCGCTGCTGGTTGATGGCCCCACCTCTG
CGATGTTTTGCTCCTGCGCAGAACGCATCATGTCGGTGAGCTGCTCCCGG
AAGTTCTTGCGCTTGGGCGGGCCCAGCACTTGCTGACCGGAGCGATCTGA
GCCGCCGGCATAGAAGGCCTGCTGGTCATCGTCACTAGACGACTCCTTCG
ACATGTCGCTAAGCGTTGCGAATTTTTGGCTTGGCCTTGGTCGCTGCCGG
GGCGATGTC

BS06871.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11139-PA 1224 p47-RA 315..1224 926..17 4550 100 Minus
CG11139-PA 1224 p47-RA 283..318 959..924 180 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
p47-RA 1432 CG11139-RA 372..1313 959..17 4690 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7465778..7466207 494..923 2150 100 Plus
2R 25286936 2R 7465331..7465676 150..495 1730 100 Plus
2R 25286936 2R 7465137..7465269 17..149 665 100 Plus
Blast to na_te.dros performed on 2015-01-30 14:32:12 has no hits.

BS06871.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 08:54:44 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:30 Download gff for BS06871.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11139-PA 283..1224 17..959 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:04:03 Download gff for BS06871.3prime
Subject Subject Range Query Range Percent Splice Strand
p47-RA 372..1315 12..959 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:35:21 Download gff for BS06871.3prime
Subject Subject Range Query Range Percent Splice Strand
p47-RA 372..1315 12..959 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:35:21 Download gff for BS06871.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7465131..7465269 12..149 97 <- Plus
2R 7465331..7465675 150..494 100 <- Plus
2R 7465779..7466207 495..924 99 <- Plus
2R 7466263..7466297 925..959 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:04:03 Download gff for BS06871.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3352636..3352774 12..149 97 <- Plus
arm_2R 3352836..3353180 150..494 100 <- Plus
arm_2R 3353284..3353712 495..924 99 <- Plus
arm_2R 3353768..3353802 925..959 100   Plus

BS06871.5prime Sequence

938 bp (835 high quality bases) assembled on 2005-12-04

> BS06871.5prime
GAAGTTATCAGTCGACATGGCCGCGCGCGGCGATTTGATTGCACAGTTCA
TTGAGATCACCGGAACCGACGAGAACGTGGCCAGGTTCTACCTGTCCAGC
TGCGACTGGGACATCGAGCACGCGCTGGGCAACTACTGGAGCACCCAGGC
GGACCTGCCGGTTCCGGTGCCGACGGTGGGCCACGCGGACAACCCCAAAC
CAAAGCCGACATCGAGCAGCGGAGCAAGTGCATCGGCATCCGCTGCTGGG
GCCACCAAGAGTGCGGACTCAGCCGTCGCTACCTCGTCAGCTTCGGTGGA
CATCGCCCCGGCAGCGACCAAGGCCAAGCCAAAATTCGCAACGCTTAGCG
ACATGTCGAAGGAGTCGTCTAGTGACGATGACCAGCAGGCCTTCTATGCC
GGCGGCTCAGATCGCTCCGGTCAGCAAGTGCTGGGCCCGCCCAAGCGCAA
GAACTTCCGGGAGCAGCTCACCGACATGATGCGTTCTGCGCAGGAGCAAA
ACATCGCAGAGGTGGGGCCATCAACCAGCAGCGGCAGTGCCAGCGGAGGA
TCTGGCGGTGCCGTCTGGGGCCAAGGCATGCGGCTGGGCATGACCGATAA
TGACCACACGGCTGTGGGCACCAAAAAACCGGCTGCGACCATCGAAAACA
AGCCGGTGGTGGTGCTAAAGCTCTGGAGCCAGGGCTTCTCCATCGATGGC
GGTGAGCTTCGTCACTATGACGATCCGCAGAATAAGGAATTCCTAGAGAC
TGTCATGCGCGGGGAAATTCCGCAAGAGCTGCTGGAAATGGGGCGCATGG
TCAATGTGGATGTGGAGGACCACCGCCACGAGGACTTCAAACGTCAGCCA
GTTCCGCAGACTTTTAAGGGATCGGGCCAGAAGCTGGGCAGTCCCGTGGG
CAATTTGGTCACGGAAGCGCCAACAGTTCCAGTGGCAT

BS06871.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG11139-PA 1224 p47-RA 1..922 17..938 4585 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
p47-RA 1432 CG11139-RA 90..1011 17..938 4595 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:49:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7465778..7466207 763..334 2150 100 Minus
2R 25286936 2R 7466263..7466479 333..117 1085 100 Minus
2R 25286936 2R 7465500..7465676 938..762 870 99.4 Minus
2R 25286936 2R 7466569..7466670 118..17 510 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:49:42 has no hits.

BS06871.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 08:54:45 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:32 Download gff for BS06871.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11139-PA 1..922 17..938 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:26:40 Download gff for BS06871.5prime
Subject Subject Range Query Range Percent Splice Strand
p47-RA 85..1011 11..938 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:25:38 Download gff for BS06871.5prime
Subject Subject Range Query Range Percent Splice Strand
p47-RA 85..1011 11..938 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:25:38 Download gff for BS06871.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7465500..7465675 763..938 99 <- Minus
2R 7465779..7466207 334..762 100 <- Minus
2R 7466263..7466477 119..333 100 <- Minus
2R 7466569..7466675 11..118 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:26:40 Download gff for BS06871.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3353005..3353180 763..938 99 <- Minus
arm_2R 3353284..3353712 334..762 100 <- Minus
arm_2R 3353768..3353982 119..333 100 <- Minus
arm_2R 3354074..3354180 11..118 97   Minus

BS06871.complete Sequence

1256 bp (1256 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635653

> BS06871.complete
GAAGTTATCAGTCGACATGGCCGCGCGCGGCGATTTGATTGCACAGTTCA
TTGAGATCACCGGAACCGACGAGAACGTGGCCAGGTTCTACCTGTCCAGC
TGCGACTGGGACATCGAGCACGCGCTGGGCAACTACTGGAGCACCCAGGC
GGACCTGCCGGTTCCGGTGCCGACGGTGGGCCACGCGGACAACCCCAAAC
CAAAGCCGACATCGAGCAGCGGAGCAAGTGCATCGGCATCCGCTGCTGGG
GCCACCAAGAGTGCGGACTCAGCCGTCGCTACCTCGTCAGCTTCGGTGGA
CATCGCCCCGGCAGCGACCAAGGCCAAGCCAAAATTCGCAACGCTTAGCG
ACATGTCGAAGGAGTCGTCTAGTGACGATGACCAGCAGGCCTTCTATGCC
GGCGGCTCAGATCGCTCCGGTCAGCAAGTGCTGGGCCCGCCCAAGCGCAA
GAACTTCCGGGAGCAGCTCACCGACATGATGCGTTCTGCGCAGGAGCAAA
ACATCGCAGAGGTGGGGCCATCAACCAGCAGCGGCAGTGCCAGCGGAGGA
TCTGGCGGTGCCGTCTGGGGCCAAGGCATGCGGCTGGGCATGACCGATAA
TGACCACACGGCTGTGGGCACCAAAAAACCGGCTGCGACCATCGAAAACA
AGCCGGTGGTGGTGCTAAAGCTCTGGAGCCAGGGCTTCTCCATCGATGGC
GGTGAGCTTCGTCACTATGACGATCCGCAGAATAAGGAATTCCTAGAGAC
TGTCATGCGCGGGGAAATTCCGCAAGAGCTGCTGGAAATGGGGCGCATGG
TCAATGTGGATGTGGAGGACCACCGCCACGAGGACTTCAAACGTCAGCCA
GTTCCGCAGACTTTTAAGGGATCGGGCCAGAAGCTGGGCAGTCCCGTGGC
CAATTTGGTCACGGAAGCGCCAACAGTTCCAGTGGCATTGTCGCCCGGTG
AGGCTGCAAACCAGGAGGCTAGTGCCCGTGATGCCATTAACTTAAATTCC
GAAGCACCGTCCACTACGCTGCAGATTCGCCTAGCGGACGGTTCGCGTCT
AGCTGCGCAGTTTAATCTTTCGCACACCGTCTCCGACATTCGTCGTTTCA
TACAAACTGCACGCCCTCAGTACTCAACTAGTAATTTCATCCTGGTGTCC
TCGTTCCCCACTCGCGAGCTGAGCGACGACAATTCCACCATCGAGAAGGC
TGGCCTCAAGAACGCGGCACTCATGCAGCGCCTCAAGTAAAAGCTTTCTA
GACCAT

BS06871.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
p47-RA 1224 CG11139-PA 1..1224 17..1240 6120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:37:35
Subject Length Description Subject Range Query Range Score Percent Strand
p47-RA 1432 CG11139-RA 90..1313 17..1240 6120 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:37:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7465778..7466207 763..334 2150 100 Minus
2R 25286936 2R 7465331..7465676 1107..762 1730 100 Minus
2R 25286936 2R 7466263..7466479 333..117 1085 100 Minus
2R 25286936 2R 7465137..7465269 1240..1108 665 100 Minus
2R 25286936 2R 7466569..7466670 118..17 510 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:37:32 has no hits.

BS06871.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:51 Download gff for BS06871.complete
Subject Subject Range Query Range Percent Splice Strand
p47-RA 1..1224 17..1240 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:29 Download gff for BS06871.complete
Subject Subject Range Query Range Percent Splice Strand
p47-RA 57..1287 11..1245 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:59 Download gff for BS06871.complete
Subject Subject Range Query Range Percent Splice Strand
p47-RA 90..1311 17..1238 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:51 Download gff for BS06871.complete
Subject Subject Range Query Range Percent Splice Strand
p47-RA 57..1287 11..1245 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:30 Download gff for BS06871.complete
Subject Subject Range Query Range Percent Splice Strand
p47-RA 90..1311 17..1238 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:30 Download gff for BS06871.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7465139..7465269 1108..1238 100 <- Minus
2R 7465331..7465675 763..1107 100 <- Minus
2R 7465779..7466207 334..762 100 <- Minus
2R 7466263..7466477 119..333 100 <- Minus
2R 7466569..7466670 17..118 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:59 Download gff for BS06871.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3352644..3352774 1108..1238 100 <- Minus
arm_2R 3352836..3353180 763..1107 100 <- Minus
arm_2R 3353284..3353712 334..762 100 <- Minus
arm_2R 3353768..3353982 119..333 100 <- Minus
arm_2R 3354074..3354175 17..118 100   Minus

BS06871.pep Sequence

Translation from 16 to 1239

> BS06871.pep
MAARGDLIAQFIEITGTDENVARFYLSSCDWDIEHALGNYWSTQADLPVP
VPTVGHADNPKPKPTSSSGASASASAAGATKSADSAVATSSASVDIAPAA
TKAKPKFATLSDMSKESSSDDDQQAFYAGGSDRSGQQVLGPPKRKNFREQ
LTDMMRSAQEQNIAEVGPSTSSGSASGGSGGAVWGQGMRLGMTDNDHTAV
GTKKPAATIENKPVVVLKLWSQGFSIDGGELRHYDDPQNKEFLETVMRGE
IPQELLEMGRMVNVDVEDHRHEDFKRQPVPQTFKGSGQKLGSPVANLVTE
APTVPVALSPGEAANQEASARDAINLNSEAPSTTLQIRLADGSRLAAQFN
LSHTVSDIRRFIQTARPQYSTSNFILVSSFPTRELSDDNSTIEKAGLKNA
ALMQRLK*

BS06871.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
p47-PA 407 CG11139-PA 1..407 1..407 2072 100 Plus
CG42383-PA 353 CG4556-PA 7..335 8..406 396 29.2 Plus