Clone Sequence Records
BS06875.complete Sequence
1769 bp assembled on 2009-12-07
GenBank Submission: KX803193
> BS06875.complete
GAAGTTATCAGTCGACATGGAGGCATCAAGAATAACCGCGATCGCCAGCA
GTGCAGTGTCCGTTACCGCTCCCAATCCCCCCACAGTGTCCACCATTCCC
ACAGCAGCTGCGAGCACACTAATCCAGGTAGGCGTGTCGCCAGCAACAAC
AACCATGCCAACACCAGCAGCCACAACAACAACAACCACAATAGGAAGTA
CAGCTAGCAGTGCCGTTGGAATTTCAACGCCGATACGAAATCCCATTTCA
AATCTGCAGATAGAACAGCAAAACGATCAAAAGCGAAGAAGTTCATCGCG
GACGATTAAAAGGAAGCGTTTTGATGACGAAATAGTTGAGTACAACATTG
CGGTGCCCACAAATCGCAGCGGAACAGACGCCAATCGCAGCAGCAGGCCT
CGCACCACCTCCCAGAATTATCCAGCTTTGGTGGGCGTGCCGCACACCAC
GTTAGCGCCTCTTAACATACCCACTTCCACGCCACAGACGCCGCTTTCAG
TTGATTCCCTGCTGCCGGGGACACCTAGCACTGTTGCATCGCTGTCACTG
GCCACGCCCACAACGCCAGCTCCCTTGGCCACTCCCCTTCCAGTTGCCCC
AATTGTGACTGCCGTCGCGCATCCCAAACCACCGGCCATGGAGCGCTCCA
CGACCAGCGAGCGCCGTTCGCGCCCAGTGCGTCCTGCCAGCAAAAAGGCG
CAGCGTAGAAATGGTCGTCCCATGGGTCAGATGGCCACCAAGGATTTGGG
CCGCTGGAAGCCCATTGACGACTTGGCCCTCATAATTGGCATCCAGCAGA
CCAACGATCTGCGGATAATCCATCGCGGCGTTAAGTTTTCCTGCAAGTTT
ACTCTGCAGGAACTACAGCAGCGCTGGTATGCTCTGCTGTATGAGCCTGC
GGTGTCCAGGATTGCAGTGTCCGCCATAAGGAACCTGCACCCCGAACTCG
TGGAGTCCGTTCAGCGCAAAGCTTTGTACAGCGTGCAGGAGGAGGATCTG
CTTGGCACCATTAAGAGCTCGGAACAACCAAAACTTGAGCAGTTCCAGGA
GCTACTGGATAAGAATGCCTCCGTTTTCTACTGCGCCCGCACTGCCAAAT
CCTTGCAAAACCATTGGCTTCTTCTCAAGCAGTACACCCTGTTGCCGGAT
CAGTCAGTGAAGCCTATATATGGCACGGATCAGCAGCCACTCAGCTTCTC
GGATGCAGAAGATCAAATCTTCGAGCACGACCTGAACGAGCCACGTGACG
AAGCTCTCGAGATGGAGCGAGCTCTGGCAGATCGTCGCAACAAACGTAAT
ATTCGCCTGCTGGAGAACGAGCTCTCGCGCTGGGCCGTCCTGGTGGATTC
CGTGCTTAGTCCGACCGCTGCCTCCGAGTTCGACAACCAGACACTGGCCT
GCTTGTGTGGCCGCCATGTGCGGTACCTAATGCGTTCCAAGGAAATAACA
TTTGGTCGCGATGCCAAGGACTGTGTGGTGGACGTGGATCTGGGGCTCGA
GGGACCGGCTGCGAAGATCTCTCGCCGCCAAGGAACCATTAAGCTGCGCA
GCAATGGGGATTTCTTCATCGCTAACGAGGGAAAGAGGGCCATCTTTATC
GACGGCACTCCTTTGCTATCCGCCAACAAAGCTCGACTCGGTCACAACTG
CACAGTGGAAATATCCGGTCTGCGCTTCACCTTCCTGGTCAACTACGAGC
TGATCAACGCCATCCGCCAGGAGAGCGCCAAGACATCGAATCCCCTCAAC
TAGAAGCTTTCTAGACCAT
BS06875.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:08:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd5-RA | 1737 | CG1135-PA | 1..1737 | 17..1753 | 8685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:08:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd5-RA | 1947 | CG1135-RA | 101..1837 | 17..1753 | 8685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:08:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4041753..4042487 | 1019..1753 | 3675 | 100 | Plus |
| 3L | 28110227 | 3L | 4040965..4041693 | 290..1018 | 3645 | 100 | Plus |
| 3L | 28110227 | 3L | 4040629..4040903 | 17..291 | 1375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:08:49 has no hits.
BS06875.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:21 Download gff for
BS06875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1135-RA | 96..1832 | 17..1753 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:55 Download gff for
BS06875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd5-RA | 101..1837 | 17..1753 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:34 Download gff for
BS06875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1135-RA | 96..1832 | 17..1753 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:22:49 Download gff for
BS06875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd5-RA | 101..1837 | 17..1753 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:22:49 Download gff for
BS06875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4040629..4040903 | 17..291 | 100 | -> | Plus |
| 3L | 4040967..4041693 | 292..1018 | 100 | -> | Plus |
| 3L | 4041753..4042487 | 1019..1753 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:55 Download gff for
BS06875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4040629..4040903 | 17..291 | 100 | -> | Plus |
| arm_3L | 4040967..4041693 | 292..1018 | 100 | -> | Plus |
| arm_3L | 4041753..4042487 | 1019..1753 | 100 | | Plus |
BS06875.3prime Sequence
936 bp (853 high quality bases) assembled on 2005-12-04
> BS06875.3prime
ATGGTCTAGAAAGCTTCTAGTTGAGGGGATTCGATGTCTTGGCGCTCTCC
TGGCGGATGGCGTTGATCAGCTCGTAGTTGACCAGGAAGGTGAAGCGCAG
ACCGGATATTTCCACTGTGCAGTTGTGACCGAGTCGAGCTTTGTTGGCGG
ATAGCAAAGGAGTGCCGTCGATAAAGATGGCCCTCTTTCCCTCGTTAGCG
ATGAAGAAATCCCCATTGCTGCGCAGCTTAATGGTTCCTTGGCGGCGAGA
GATCTTCGCAGCCGGTCCCTCGAGCCCCAGATCCACGTCCACCACACAGT
CCTTGGCATCGCGACCAAATGTTATTTCCTTGGAACGCATTAGGTACCGC
ACATGGCGGCCACACAAGCAGGCCAGTGTCTGGTTGTCGAACTCGGAGGC
AGCGGTCGGACTAAGCACGGAATCCACCAGGACGGCCCAGCGCGAGAGCT
CGTTCTCCAGCAGGCGAATATTACGTTTGTTGCGACGATCTGCCAGAGCT
CGCTCCATCTCGAGAGCTTCGTCACGTGGCTCGTTCAGGTCGTGCTCGAA
GATTTGATCTTCTGCATCCGAGAAGCTGAGTGGCTGCTGATCCGTGCCAT
ATATAGGCTTCACTGACTGATCCGGCAACAGGGTGTACTGCTTGAGAAGA
AGCCAATGGTTTTGCAAGGATTTGGCAGTGCGGGCGCAGTAGAAAACGGA
GGCATTCTTATCCAGTAGCTCCTGGAACTGCTCAAGTTTTGGTTGTTCCG
AGCTCTTAATGGTGCCAAGCAGATCCTCCTCCTGCACGCTGTACAAAGCT
TTGCGCTGAACGGACTCCACGAGTTCGGGGTGCAGGTTCCTTATGGCGGA
CACTGGCATCCTGGACACCGCAGGCTCATACAGCAGAGCATACCAGCGCT
GCTGTAGTTCCTGCAGAGTAAACTTGCAGGAAACCT
BS06875.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1135-PA | 1737 | CG1135-RA | 821..1737 | 933..17 | 4535 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:33:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd5-RA | 1947 | CG1135-RA | 921..1837 | 933..17 | 4555 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:33:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4041753..4042487 | 751..17 | 3675 | 100 | Minus |
| 3L | 28110227 | 3L | 4041512..4041693 | 933..752 | 880 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-01-31 16:33:53 has no hits.
BS06875.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:53 Download gff for
BS06875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1135-PA | 818..1737 | 17..936 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:41 Download gff for
BS06875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1135-PA | 818..1737 | 17..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:25:06 Download gff for
BS06875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd5-RA | 918..1845 | 9..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:43:15 Download gff for
BS06875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd5-RA | 918..1845 | 9..936 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:43:15 Download gff for
BS06875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4041509..4041693 | 752..936 | 98 | -> | Minus |
| 3L | 4041753..4042495 | 9..751 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:25:06 Download gff for
BS06875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4041509..4041693 | 752..936 | 98 | -> | Minus |
| arm_3L | 4041753..4042495 | 9..751 | 99 | | Minus |
BS06875.5prime Sequence
901 bp (892 high quality bases) assembled on 2005-12-04
> BS06875.5prime
GAAGTTATCAGTCGACATGGAGGCATCAAGAATAACCGCGATCGCCAGCA
GTGCAGTGTCCGTTACCGCTCCCAATCCCCCCACAGTGTCCACCATTCCC
ACAGCAGCTGCGAGCACACTAATCCAGGTAGGCGTGTCGCCAGCAACAAC
AACCATGCCAACACCAGCAGCCACAACAACAACAACCACAATAGGAAGTA
CAGCTAGCAGTGCCGTTGGAATTTCAACGCCGATACGAAATCCCATTTCA
AATCTGCAGATAGAACAGCAAAACGATCAAAAGCGAAGAAGTTCATCGCG
GACGATTAAAAGGAAGCGTTTTGATGACGAAATAGTTGAGTACAACATTG
CGGTGCCCACAAATCGCAGCGGAACAGACGCCAATCGCAGCAGCAGGCCT
CGCACCACCTCCCAGAATTATCCAGCTTTGGTGGGCGTGCCGCACACCAC
GTTAGCGCCTCTTAACATACCCACTTCCACGCCACAGACGCCGCTTTCAG
TTGATTCCCTGCTGCCGGGGACACCTAGCACTGTTGCATCGCTGTCACTG
GCCACGCCCACAACGCCAGCTCCCTTGGCCACTCCCCTTCCAGTTGCCCC
AATTGTGACTGCCGTCGCGCATCCCAAACCACCGGCCATGGAGCGCTCCA
CGACCAGCGAGCGCCGTTCGCGCCCAGTGCGTCCTGCCAGCAAAAAGGCG
CAGCGTAGAAATGGTCGTCCCATGGGTCAGATGGCCACCAAGGATTTGGG
CCGCTGGAAGCCCATTGACGACTTGGCCCTCATAATTGGCATCCAGCAGA
CCAACGATCTGCGGATAATCCATCGCGGCGTTAAGTTTTCCTGCAAGTTT
ACTCTGCAGGAACTACAGCAGCGCTGGTATGCTCTGCTGTATGAGCCCTG
C
BS06875.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1135-PA | 1737 | CG1135-RA | 1..881 | 17..897 | 4405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:46:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd5-RA | 1947 | CG1135-RA | 101..981 | 17..897 | 4405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:46:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4040965..4041572 | 290..897 | 3040 | 100 | Plus |
| 3L | 28110227 | 3L | 4040629..4040903 | 17..291 | 1375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:46:17 has no hits.
BS06875.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:54 Download gff for
BS06875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1135-PA | 1..884 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:43 Download gff for
BS06875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1135-PA | 1..884 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:03:47 Download gff for
BS06875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd5-RA | 94..984 | 6..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:22:17 Download gff for
BS06875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd5-RA | 94..984 | 6..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:22:17 Download gff for
BS06875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4040627..4040903 | 16..291 | 99 | -> | Plus |
| 3L | 4040967..4041575 | 292..901 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:03:47 Download gff for
BS06875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4040627..4040903 | 16..291 | 99 | -> | Plus |
| arm_3L | 4040967..4041575 | 292..901 | 99 | | Plus |
BS06875.pep Sequence
Translation from 16 to 1752
> BS06875.pep
MEASRITAIASSAVSVTAPNPPTVSTIPTAAASTLIQVGVSPATTTMPTP
AATTTTTTIGSTASSAVGISTPIRNPISNLQIEQQNDQKRRSSSRTIKRK
RFDDEIVEYNIAVPTNRSGTDANRSSRPRTTSQNYPALVGVPHTTLAPLN
IPTSTPQTPLSVDSLLPGTPSTVASLSLATPTTPAPLATPLPVAPIVTAV
AHPKPPAMERSTTSERRSRPVRPASKKAQRRNGRPMGQMATKDLGRWKPI
DDLALIIGIQQTNDLRIIHRGVKFSCKFTLQELQQRWYALLYEPAVSRIA
VSAIRNLHPELVESVQRKALYSVQEEDLLGTIKSSEQPKLEQFQELLDKN
ASVFYCARTAKSLQNHWLLLKQYTLLPDQSVKPIYGTDQQPLSFSDAEDQ
IFEHDLNEPRDEALEMERALADRRNKRNIRLLENELSRWAVLVDSVLSPT
AASEFDNQTLACLCGRHVRYLMRSKEITFGRDAKDCVVDVDLGLEGPAAK
ISRRQGTIKLRSNGDFFIANEGKRAIFIDGTPLLSANKARLGHNCTVEIS
GLRFTFLVNYELINAIRQESAKTSNPLN*
BS06875.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:52:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd5-PA | 578 | CG1135-PA | 1..578 | 1..578 | 2928 | 100 | Plus |
