Clone Sequence Records
BS06876.3prime Sequence
911 bp (836 high quality bases) assembled on 2005-12-04
> BS06876.3prime
ATGGTCTAGAAAGCTTCTAATCGAAGGCCACCTTGCGTGTGAACGAGGTG
AGTGAGGAGATCTCGCTGGGATTGGAGTCCGATGGCAGGTGACTGAACTC
GATCTCCTCGCTGGCTGCTGAGGCAACTATATTCTCATTCGACTGTGTGG
TCTCGTCACTGTGGTGCATTGTCGGCCATTGCTTGTGACTGGGCGCGTAC
AGGATGAGCAGGGCGAAGATATAGATGTTCCACATGCCGTAGACGCCGGT
CAGGAAGGCGGAAGTTGGCTGAATTGCCACATTGTCGTTCCAGTCCCACT
GGCCCTCGGCCATTTGGCCCATAATGAAGCCGGCGACGGTCAGAGCTGCA
CATACAAGGGTGGCCAGCATCAAAAACTTGAAGCGATAGATAAGACCTTT
ACTTTCATTTGCCTTATGCAATTGAAAAAAAAAAGCTTTTGTGTAAAAAT
ATACGATTCCGGCCCAATCTTCAACTTTCTGGTCTAAAGGAACTTCATAA
TGGAGTCGTCGCGCCTGGGACATCGAAGGCAGCGAGGTGCGCTTGTCGCC
AATATTCCTAAACACCTTCCATATCATGTAGCACAGAAAGAGGAAATAAA
TGGCTGCCGAAACTCCGGCCAGAACAATGAAAGTCATGGCCACCTTAGCG
CCCAGCGGCGTTGTCCAGATCGAGTAGAATGGATTGCGTAGCTGCACGCC
CCTTTCGCAGATGTCGAAGACGAACAGCGAGATGCAGCCCACGACGACGG
CCGAGAGATGTTTCCAGTAACGCGAGCGAATGGTCGACTTGTTCGGAGCA
TCCTGAATGAGCATGTGTTCACCGGCGAAGACCAGCCAGAAAGTGAGCAG
CATGGCATAAAAGATGCCTTGGCGAATATCACTTAGCAGCAGCATGTACG
GCATCTCGTAG
BS06876.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6210-PA | 1785 | MRP-RA | 891..1785 | 911..17 | 4475 | 100 | Minus |
| CG6210-PB | 1689 | MRP-RB | 891..1309 | 911..493 | 2095 | 100 | Minus |
| CG6210-PB | 1689 | MRP-RB | 1307..1689 | 399..17 | 1915 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:02:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wls-RA | 2574 | CG6210-RA | 1071..1965 | 911..17 | 4475 | 100 | Minus |
| wls-RB | 2478 | CG6210-RB | 1071..1489 | 911..493 | 2095 | 100 | Minus |
| wls-RB | 2478 | CG6210-RB | 1487..1869 | 399..17 | 1915 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:02:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11168137..11168555 | 493..911 | 2095 | 100 | Plus |
| 3L | 28110227 | 3L | 11167229..11167610 | 17..398 | 1910 | 100 | Plus |
| 3L | 28110227 | 3L | 11167817..11167916 | 395..494 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 01:02:05 has no hits.
BS06876.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:55 Download gff for
BS06876.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MRP-PA | 891..1785 | 17..911 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:44 Download gff for
BS06876.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6210-PA | 891..1785 | 17..911 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:50:46 Download gff for
BS06876.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wls-RA | 1071..1967 | 13..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:05:52 Download gff for
BS06876.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wls-RA | 1071..1967 | 13..911 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:05:52 Download gff for
BS06876.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11167227..11167608 | 13..396 | 99 | <- | Plus |
| 3L | 11167819..11167914 | 397..492 | 100 | <- | Plus |
| 3L | 11168137..11168555 | 493..911 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:50:46 Download gff for
BS06876.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11160327..11160708 | 13..396 | 99 | <- | Plus |
| arm_3L | 11160919..11161014 | 397..492 | 100 | <- | Plus |
| arm_3L | 11161237..11161655 | 493..911 | 100 | | Plus |
BS06876.5prime Sequence
977 bp (870 high quality bases) assembled on 2005-12-04
> BS06876.5prime
GAAGTTATCAGTCGACATGTCGGGCACCATACTGGAGAACCTGAGTGGCC
GCAAGCTGTCCATATTGGTGGCCACTTTGCTGCTCTGCCAGGTGTTGTGC
TTCCTGCTGGGCGGTCTGTATGCCCCCCTGCCCGCCGGCCATGTCACCGT
GCTGGGATCGCTGTGCCGCGAGGATCACGCCCGCCAGAATGACACCAGTT
TCCTGCTGTACTCACGCGGTGCAGGAGCCTGCATCCCAGTGACGCGAGAG
GAGGTGGAGCAGGATTCAACAAAGATGGCCAATGAGTTGGTGCACGTTTT
CCAGATGCCGCTGCCTCGTGACCTGCGCGACCTGGACTACTCCCGTTGGC
AGCAGAATCTGATCGGTGTGCTACAGGTGGAGTTCGGCTATGATTCCTCG
TCGGAGCTAAGGGAACCGCCCAGGGAACTTCAGTTGACAATCGACATGCG
TCTGGCGTACCGAAATAAGGGGGATCCGGACAACGGCTGGAAGTTGTACG
CCCACGGCGTCGAGCATCGCTACCTGGATTGTGTCACTTCTCATGTGGGT
CCCACAGAAACGCTGTACTCATGCGACATGATACCGCTTTTCGAATTGGG
CGCATTGCACCACAGCTTCTATCTGCTGAACTTGCGTTTCCCGCTGGACA
CACCGAGCCAAATGAACCTGCAGTTCGGCCATATGCACGATCTCACGCTG
ACAGCTATTCATCAGAACGGAGGATTCACACAGATTTGGCTGTTGCTTAA
GACAATGCTGTTTCCATTCGTAGTGNGCATCATGATATGGTTCTGGAGGC
GAGTGCATCTGCTGCAACGATCCCCCGCCCTGCTGGAGTATATGCTTATC
TATTTGGGAGCCGCTCTGACCTTCCCCTCATCTACGCTGGAGTACTTGTC
GCTGGTCTACGAGATGCCGTACATGCTGCTGCTAAGTGATATTCGGCAAG
GCATCTTTTTATGCCTGCTGCTCACTT
BS06876.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6210-PA | 1785 | MRP-RA | 1..859 | 17..875 | 4276 | 99.8 | Plus |
| CG6210-PB | 1689 | MRP-RB | 1..859 | 17..875 | 4276 | 99.8 | Plus |
| CG6210-PA | 1785 | MRP-RA | 869..943 | 885..959 | 350 | 98.6 | Plus |
| CG6210-PB | 1689 | MRP-RB | 869..943 | 885..959 | 350 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:41:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wls-RB | 2478 | CG6210-RB | 181..1141 | 17..977 | 4659 | 99.2 | Plus |
| wls-RA | 2574 | CG6210-RA | 181..1141 | 17..977 | 4659 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:41:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11168485..11169445 | 977..17 | 4584 | 98.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:41:19 has no hits.
BS06876.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:58 Download gff for
BS06876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MRP-PA | 1..961 | 17..977 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:45 Download gff for
BS06876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6210-PB | 1..961 | 17..977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:02:01 Download gff for
BS06876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wls-RA | 173..1141 | 9..977 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:09:35 Download gff for
BS06876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wls-RA | 173..1141 | 9..977 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:09:35 Download gff for
BS06876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11168485..11169453 | 9..977 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:02:01 Download gff for
BS06876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11161585..11162553 | 9..977 | 98 | | Minus |
BS06876.complete Sequence
1817 bp assembled on 2008-01-02
GenBank Submission: FJ638798
> BS06876.complete
GAAGTTATCAGTCGACATGTCGGGCACCATACTGGAGAACCTGAGTGGCC
GCAAGCTGTCCATATTGGTGGCCACTTTGCTGCTCTGCCAGGTGTTGTGC
TTCCTGCTGGGCGGTCTGTATGCCCCCCTGCCCGCCGGCCATGTCACCGT
GCTGGGATCGCTGTGCCGCGAGGATCACGCCCGCCAGAATGACACCAGTT
TCCTGCTGTACTCACGCGGTGCAGGAGCCTGCATCCCAGTGACGCGAGAG
GAGGTGGAGCAGGATTCAACAAAGATGGCCAATGAGTTGGTGCACGTTTT
CCAGATGCCGCTGCCTCGTGACCTGCGCGACCTGGACTACTCCCGTTGGC
AGCAGAATCTGATCGGTGTGCTACAGGTGGAGTTCGGCTATGATTCCTCG
TCGGAGCTAAGGGAACCGCCCAGGGAACTTCAGTTGACAATCGACATGCG
TCTGGCGTACCGAAATAAGGGGGATCCGGACAACGGCTGGAAGTTGTACG
CCCACGGCGTCGAGCATCGCTACCTGGATTGTGTCACTTCTCATGTGGGT
CCCACAGAAACGCTGTACTCATGCGACATGATACCGCTTTTCGAATTGGG
CGCATTGCACCACAGCTTCTATCTGCTGAACTTGCGTTTCCCGCTGGACA
CACCGAGCCAAATGAACCTGCAGTTCGGCCATATGCACGATCTCACGCTG
ACAGCTATTCATCAGAACGGAGGATTCACACAGATTTGGCTGTTGCTTAA
GACAATGCTGTTTCCATTCGTAGTGGGCATCATGATATGGTTCTGGAGGC
GAGTGCATCTGCTGCAACGATCCCCCGCCCTGCTGGAGTATATGCTTATC
TATTTGGGAGCCGCTCTGACCTTCCTCAATCTACCGCTGGAGTACTTGTC
GCTGGTCTACGAGATGCCGTACATGCTGCTGCTAAGTGATATTCGCCAAG
GCATCTTTTATGCCATGCTGCTCACTTTCTGGCTGGTCTTCGCCGGTGAA
CACATGCTCATTCAGGATGCTCCGAACAAGTCGACCATTCGCTCGCGTTA
CTGGAAACATCTCTCGGCCGTCGTCGTGGGCTGCATCTCGCTGTTCGTCT
TCGACATCTGCGAAAGGGGCGTGCAGCTACGCAATCCATTCTACTCGATC
TGGACAACGCCGCTGGGCGCTAAGGTGGCCATGACTTTCATTGTTCTGGC
CGGAGTTTCGGCAGCCATTTATTTCCTCTTTCTGTGCTACATGATATGGA
AGGTGTTTAGGAATATTGGCGACAAGCGCACCTCGCTGCCTTCGATGTCC
CAGGCGCGACGACTCCATTATGAAGTTCCTTTAGACCAGAAAGTTGAAGA
TTGGGCCGGAATCGTATATTTTTACACAAAAGCTTTTTTTTTTCAATTGC
ATAAGGCAAATGAAAGTAAAGGTCTTATCTATCGCTTCAAGTTTTTGATG
CTGGCCACCCTTGTATGTGCAGCTCTGACCGTCGCCGGCTTCATTATGGG
CCAAATGGCCGAGGGCCAGTGGGACTGGAACGACAATGTGGCAATTCAGC
CAACTTCCGCCTTCCTGACCGGCGTCTACGGCATGTGGAACATCTATATC
TTCGCCCTGCTCATCCTGTACGCGCCCAGTCACAAGCAATGGCCGACAAT
GCACCACAGTGACGAGACCACACAGTCGAATGAGAATATAGTTGCCTCAG
CAGCCAGCGAGGAGATCGAGTTCAGTCACCTGCCATCGGACTCCAATCCC
AGCGAGATCTCCTCACTCACCTCGTTCACACGCAAGGTGGCCTTCGATTA
GAAGCTTTCTAGACCAT
BS06876.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wls-RA | 1785 | CG6210-PA | 1..1785 | 17..1801 | 8925 | 100 | Plus |
| wls-RB | 1689 | CG6210-PB | 1..1309 | 17..1325 | 6545 | 100 | Plus |
| wls-RB | 1689 | CG6210-PB | 1307..1689 | 1419..1801 | 1915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wls-RA | 2574 | CG6210-RA | 181..1965 | 17..1801 | 8925 | 100 | Plus |
| wls-RB | 2478 | CG6210-RB | 181..1489 | 17..1325 | 6545 | 100 | Plus |
| wls-RB | 2478 | CG6210-RB | 1487..1869 | 1419..1801 | 1915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:49:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11168137..11169445 | 1325..17 | 6545 | 100 | Minus |
| 3L | 28110227 | 3L | 11167229..11167610 | 1801..1420 | 1910 | 100 | Minus |
| 3L | 28110227 | 3L | 11167817..11167916 | 1423..1324 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:49:07 has no hits.
BS06876.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:06:20 Download gff for
BS06876.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wls-RA | 1..1785 | 17..1801 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:10 Download gff for
BS06876.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wls-RA | 197..1981 | 17..1801 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:42 Download gff for
BS06876.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wls-RA | 181..1965 | 17..1801 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:06:20 Download gff for
BS06876.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wls-RA | 189..1983 | 9..1805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:40 Download gff for
BS06876.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wls-RA | 181..1965 | 17..1801 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:40 Download gff for
BS06876.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11167229..11167608 | 1422..1801 | 100 | <- | Minus |
| 3L | 11167819..11167914 | 1326..1421 | 100 | <- | Minus |
| 3L | 11168137..11169445 | 17..1325 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:42 Download gff for
BS06876.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11160329..11160708 | 1422..1801 | 100 | <- | Minus |
| arm_3L | 11160919..11161014 | 1326..1421 | 100 | <- | Minus |
| arm_3L | 11161237..11162545 | 17..1325 | 100 | | Minus |
BS06876.pep Sequence
Translation from 16 to 1800
> BS06876.pep
MSGTILENLSGRKLSILVATLLLCQVLCFLLGGLYAPLPAGHVTVLGSLC
REDHARQNDTSFLLYSRGAGACIPVTREEVEQDSTKMANELVHVFQMPLP
RDLRDLDYSRWQQNLIGVLQVEFGYDSSSELREPPRELQLTIDMRLAYRN
KGDPDNGWKLYAHGVEHRYLDCVTSHVGPTETLYSCDMIPLFELGALHHS
FYLLNLRFPLDTPSQMNLQFGHMHDLTLTAIHQNGGFTQIWLLLKTMLFP
FVVGIMIWFWRRVHLLQRSPALLEYMLIYLGAALTFLNLPLEYLSLVYEM
PYMLLLSDIRQGIFYAMLLTFWLVFAGEHMLIQDAPNKSTIRSRYWKHLS
AVVVGCISLFVFDICERGVQLRNPFYSIWTTPLGAKVAMTFIVLAGVSAA
IYFLFLCYMIWKVFRNIGDKRTSLPSMSQARRLHYEVPLDQKVEDWAGIV
YFYTKAFFFQLHKANESKGLIYRFKFLMLATLVCAALTVAGFIMGQMAEG
QWDWNDNVAIQPTSAFLTGVYGMWNIYIFALLILYAPSHKQWPTMHHSDE
TTQSNENIVASAASEEIEFSHLPSDSNPSEISSLTSFTRKVAFD*
BS06876.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:36:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wls-PA | 594 | CG6210-PA | 1..594 | 1..594 | 3139 | 100 | Plus |
| wls-PB | 562 | CG6210-PB | 1..562 | 1..594 | 2923 | 94.6 | Plus |
