Clone Sequence Records
BS06877.3prime Sequence
950 bp (807 high quality bases) assembled on 2005-12-04
> BS06877.3prime
ATGGTCTAGAAAGCTTTCACGGATTCCCTATAATATTGAGGCCGGCGCAG
TGCATCTTCTCGGTGGGCATGGCCTGCACGAAGTACTCGCGGTTGTCCAG
CGACATGTGGCACAGCGGCTTCTTCTTCTGCGACATTTCGTCGTCCTTGT
TCTTCAGGTCCTCCAGCAGCTTGGGGAACCAGGTCAGCTCGCAGGAGCAG
TTCAGCGGGTTATCGGTGATATCGATGATGCGAAGGGTGTCGATGACGGG
CTCCATTATGTCCTGCGGAATGCGCTGCAACTTGTTGTTCTGCAGGTTCA
GCGTTTCCAGCGAGTTGAGGTTCTCAAACAGAAGACTGGGCAGAACCTTG
ATGTCGTTCTTCTGCAGGTTGAGGAAAGTCAGGGAATCTCCAAAGCCAGT
GAAGGCATCTTCAGCCAAAACATTGATATTGTTGTTGCGCAAGTCCAAGT
GGCGAAGGCGGTGCAGCGGACGCAGTGCCTCGCTGGGAATAGTGTGGATC
TGGTTATCACCCAGGCGCAGATATTGCAGGTTCTCCTCTAGGCCCTTGAA
GGCATCCTTGTCAATCACACTGATCTTATTGCCCTCCAGCTCCAAGGAGT
TTAGCAGGGTGAGGTGACTAAACACATTGGCAGGCACGGTGGTGATCATG
TTGTGGGCCAAAATCAATGAGTCCAGGCTCTGCAAGCCTTCGAAATCGCC
TTCGCTGATAGTTCGTATCTTGTTCTCCTGAATCTCCAGTTTCTTTAAGG
TGCTCAAAATGGAAAGAGCTTTCTGCGGGATATTGGTAAGATCGTTGCCA
CCCAAATTCAGGCGCTTAATATGGTCCCTCAGTCCTCGGAAAGCCTCGGG
ATCGATCTGTGTAATCTTGTTCTCGTAGAGCGTCAGAATCTCCAGGGGTC
TCAGTCCCTCGAANGCATTGTTGTGGATCACGGTGATTTTATTGTGGGTC
BS06877.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14762-PA | 1413 | CG14762-RA | 603..1413 | 827..17 | 4055 | 100 | Minus |
CG14762-PA | 1413 | CG14762-RA | 533..599 | 897..831 | 335 | 100 | Minus |
CG14762-PA | 1413 | CG14762-RA | 483..528 | 947..902 | 211 | 97.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:44:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14762-RA | 3658 | CG14762-RA | 1319..2250 | 947..16 | 4559 | 99.5 | Minus |
CG14762-RB | 3801 | CG14762-RB | 1319..2231 | 947..35 | 4464 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:43:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8011401..8011582 | 354..535 | 910 | 100 | Plus |
2R | 25286936 | 2R | 8010914..8011093 | 35..214 | 900 | 100 | Plus |
2R | 25286936 | 2R | 8011643..8011797 | 535..689 | 775 | 100 | Plus |
2R | 25286936 | 2R | 8011172..8011311 | 214..353 | 700 | 100 | Plus |
2R | 25286936 | 2R | 8011865..8012002 | 687..824 | 690 | 100 | Plus |
2R | 25286936 | 2R | 8012066..8012182 | 831..947 | 514 | 95.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:44:02 has no hits.
BS06877.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:59 Download gff for
BS06877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14762-PA | 480..1413 | 17..950 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:47 Download gff for
BS06877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14762-PA | 480..1413 | 17..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:46:23 Download gff for
BS06877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14762-RA | 1316..2252 | 11..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:10:04 Download gff for
BS06877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14762-RA | 1316..2252 | 11..950 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:10:04 Download gff for
BS06877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8011401..8011581 | 354..534 | 100 | <- | Plus |
2R | 8011643..8011795 | 535..687 | 100 | <- | Plus |
2R | 8011866..8012002 | 688..824 | 100 | <- | Plus |
2R | 8012056..8012185 | 825..950 | 93 | | Plus |
2R | 8010914..8011092 | 35..213 | 100 | <- | Plus |
2R | 8011172..8011311 | 214..353 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:46:23 Download gff for
BS06877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3898419..3898597 | 35..213 | 100 | <- | Plus |
arm_2R | 3898677..3898816 | 214..353 | 100 | <- | Plus |
arm_2R | 3898906..3899086 | 354..534 | 100 | <- | Plus |
arm_2R | 3899148..3899300 | 535..687 | 100 | <- | Plus |
arm_2R | 3899371..3899507 | 688..824 | 100 | <- | Plus |
arm_2R | 3899561..3899690 | 825..950 | 93 | | Plus |
BS06877.5prime Sequence
932 bp (813 high quality bases) assembled on 2005-12-04
> BS06877.5prime
GAAGTTATCAGTCGACATGGCGGGAATTCAGCTGCAATCGGGATGCACGA
TGGTCGTGACGGTGGTGCTCCTGCTGCAGGTGCTTGTGATGGACCAGGTG
CTCGGCCAGGGTCCACCGCAGACTCAAGTGTGTCCGGAGCAGAGCGAGAT
CGCGCCCTGCATCTGCACGGTGAAGAAGAACGGGCTGGACATCCTGTGCG
AGACCACCGATCTGGCGCACATCACCAAGTCGATGGGCACGCTGAAGGGC
AAGAGTCCCATCATCTTCTACCTGAAGCTTCGCCACAACAATCTGCCCAA
GCTGCAGGGCTTCGTCTTCCTGGCCCTTGACATCCGTCACCTGACCATCC
ACAACAGCAGCCTGGCGGCCATCGAGGAGAACGCCCTCAGCTCGCTGGGA
GCGGGACTGACGCAGCTGGATGTGTCCCTCAACCAAATGAAGACGGTGCC
CTCGCAGGCTCTGCAACATCTGTTCCACCTGTTGATCCTTAATCTGAACC
ACAATAAAATCACCGTGATCCACAACAATGCCTTCGAGGGACTGGAGACC
CTGGAGATTCTGACGCTCTACGAGAACAAGATTACACAGATCGATCCCGA
GGCTTTCCGAGGACTTGAGGACCATATTAAGCGCCTGAATTTGGGTGGCA
ACGATCTTACCAATATCCCGCAGAAAGCTCTTTCCATTTTGAGCACCTTA
AAGAAACTGGAGATTCAGGAGAACAAGATACGAACTATCAGCGAAGGCGA
TTTCGAAGGCTTGCAGAGCCTGGACTCATTGATTTTGGCCCACAACATGA
TCACCACCGTGCCTGCCCATGTGTTTAGTCACCTCACCCTGCTAAACTCC
TTGGAGCTGGGAGGCAATAAGATCAGTGTGATTGACAAGGATGCCTTTCA
GGGGCTAGAGGAGAACCTGCAATATCTGCGCC
BS06877.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14762-PA | 1413 | CG14762-RA | 1..916 | 17..932 | 4430 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:41:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14762-RB | 3801 | CG14762-RB | 836..1752 | 16..932 | 4495 | 99.3 | Plus |
CG14762-RA | 3658 | CG14762-RA | 836..1752 | 16..932 | 4495 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:41:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8012346..8012729 | 399..16 | 1920 | 100 | Minus |
2R | 25286936 | 2R | 8012060..8012283 | 621..398 | 1120 | 100 | Minus |
2R | 25286936 | 2R | 8011865..8012002 | 759..622 | 690 | 100 | Minus |
2R | 25286936 | 2R | 8011643..8011797 | 911..757 | 685 | 96.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:41:10 has no hits.
BS06877.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:55:01 Download gff for
BS06877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14762-PA | 1..916 | 17..932 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:48 Download gff for
BS06877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14762-PA | 1..916 | 17..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:01:59 Download gff for
BS06877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14762-RA | 832..1752 | 8..932 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:09:03 Download gff for
BS06877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14762-RA | 832..1752 | 8..932 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:09:03 Download gff for
BS06877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8011561..8011581 | 912..932 | 100 | <- | Minus |
2R | 8011643..8011795 | 759..911 | 96 | <- | Minus |
2R | 8011866..8012002 | 622..758 | 100 | <- | Minus |
2R | 8012060..8012282 | 399..621 | 100 | <- | Minus |
2R | 8012347..8012733 | 8..398 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:01:59 Download gff for
BS06877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3899066..3899086 | 912..932 | 100 | <- | Minus |
arm_2R | 3899148..3899300 | 759..911 | 96 | <- | Minus |
arm_2R | 3899371..3899507 | 622..758 | 100 | <- | Minus |
arm_2R | 3899565..3899787 | 399..621 | 100 | <- | Minus |
arm_2R | 3899852..3900238 | 8..398 | 98 | | Minus |
BS06877.complete Sequence
1445 bp (1445 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635654
> BS06877.complete
GAAGTTATCAGTCGACATGGCGGGAATTCAGCTGCAATCGGGATGCACGA
TGGTCGTGACGGTGGTGCTCCTGCTGCAGGTGCTTGTGATGGACCAGGTG
CTCGGCCAGGGTCCACCGCAGACTCAAGTGTGTCCGGAGCAGAGCGAGAT
CGCGCCCTGCATCTGCACGGTGAAGAAGAACGGGCTGGACATCCTGTGCG
AGACCACCGATCTGGCGCACATCACCAAGTCGATGGGCACGCTGAAGGGC
AAGAGTCCCATCATCTTCTACCTGAAGCTTCGCCACAACAATCTGCCCAA
GCTGCAGGGCTTCGTCTTCCTGGCCCTTGACATCCGTCACCTGACCATCC
ACAACAGCAGCCTGGCGGCCATCGAGGAGAACGCCCTCAGCTCGCTGGGA
GCGGGACTGACGCAGCTGGATGTGTCCCTCAACCAAATGAAGACGGTGCC
CTCGCAGGCTCTGCAACATCTGTTCCACCTGTTGATCCTTAATCTGAACC
ACAATAAAATCACCGTGATCCACAACAATGCCTTCGAGGGACTGGAGACC
CTGGAGATTCTGACGCTCTACGAGAACAAGATTACACAGATCGATCCCGA
GGCTTTCCGAGGACTTGAGGACCATATTAAGCGCCTGAATTTGGGTGGCA
ACGATCTTACCAATATCCCGCAGAAAGCTCTTTCCATTTTGAGCACCTTA
AAGAAACTGGAGATTCAGGAGAACAAGATACGAACTATCAGCGAAGGCGA
TTTCGAAGGCTTGCAGAGCCTGGACTCATTGATTTTGGCCCACAACATGA
TCACCACCGTGCCTGCCAATGTGTTTAGTCACCTCACCCTGCTAAACTCC
TTGGAGCTGGAGGGCAATAAGATCAGTGTGATTGACAAGGATGCCTTCAA
GGGCCTAGAGGAGAACCTGCAATATCTGCGCCTGGGTGATAACCAGATCC
ACACTATTCCCAGCGAGGCACTGCGTCCGCTGCACCGCCTTCGCCACTTG
GACTTGCGCAACAACAATATCAATGTTTTGGCTGAAGATGCCTTCACTGG
CTTTGGAGATTCCCTGACTTTCCTCAACCTGCAGAAGAACGACATCAAGG
TTCTGCCCAGTCTTCTGTTTGAGAACCTCAACTCGCTGGAAACGCTGAAC
CTGCAGAACAACAAGTTGCAGCGCATTCCGCAGGACATAATGGAGCCCGT
CATCGACACCCTTCGCATCATCGATATCACCGATAACCCGCTGAACTGCT
CCTGCGAGCTGACCTGGTTCCCCAAGCTGCTGGAGGACCTGAAGAACAAG
GACGACGAAATGTCGCAGAAGAAGAAGCCGCTGTGCCACATGTCGCTGGA
CAACCGCGAGTACTTCGTGCAGGCCATGCCCACCGAGAAGATGCACTGCG
CCGGCCTCAATATTATAGGGAATCCGTGAAAGCTTTCTAGACCAT
BS06877.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:48:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14762-RA | 1413 | CG14762-PA | 1..1413 | 17..1429 | 7065 | 100 | Plus |
CG14762-RB | 1497 | CG14762-PB | 1..1395 | 17..1411 | 6975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:48:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14762-RA | 3658 | CG14762-RA | 836..2250 | 16..1430 | 7075 | 100 | Plus |
CG14762-RB | 3801 | CG14762-RB | 836..2231 | 16..1411 | 6980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:48:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8012346..8012729 | 399..16 | 1920 | 100 | Minus |
2R | 25286936 | 2R | 8012060..8012283 | 621..398 | 1120 | 100 | Minus |
2R | 25286936 | 2R | 8011401..8011582 | 1092..911 | 910 | 100 | Minus |
2R | 25286936 | 2R | 8010914..8011093 | 1411..1232 | 900 | 100 | Minus |
2R | 25286936 | 2R | 8011643..8011797 | 911..757 | 775 | 100 | Minus |
2R | 25286936 | 2R | 8011172..8011311 | 1232..1093 | 700 | 100 | Minus |
2R | 25286936 | 2R | 8011865..8012002 | 759..622 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:48:18 has no hits.
BS06877.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:52 Download gff for
BS06877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14762-RA | 1..1413 | 17..1429 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:30 Download gff for
BS06877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14762-RA | 831..2251 | 8..1435 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:26 Download gff for
BS06877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14762-RA | 837..2248 | 17..1428 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:52 Download gff for
BS06877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14762-RA | 831..2251 | 8..1435 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:37 Download gff for
BS06877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14762-RA | 837..2248 | 17..1428 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:37 Download gff for
BS06877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8012347..8012728 | 17..398 | 100 | | Minus |
2R | 8012060..8012282 | 399..621 | 100 | <- | Minus |
2R | 8011401..8011581 | 912..1092 | 100 | <- | Minus |
2R | 8011643..8011795 | 759..911 | 100 | <- | Minus |
2R | 8011866..8012002 | 622..758 | 100 | <- | Minus |
2R | 8010914..8011092 | 1233..1411 | 100 | <- | Minus |
2R | 8011172..8011311 | 1093..1232 | 100 | <- | Minus |
2R | 8010529..8010545 | 1412..1428 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:26 Download gff for
BS06877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3898034..3898050 | 1412..1428 | 100 | <- | Minus |
arm_2R | 3898419..3898597 | 1233..1411 | 100 | <- | Minus |
arm_2R | 3898677..3898816 | 1093..1232 | 100 | <- | Minus |
arm_2R | 3898906..3899086 | 912..1092 | 100 | <- | Minus |
arm_2R | 3899148..3899300 | 759..911 | 100 | <- | Minus |
arm_2R | 3899371..3899507 | 622..758 | 100 | <- | Minus |
arm_2R | 3899565..3899787 | 399..621 | 100 | <- | Minus |
arm_2R | 3899852..3900233 | 17..398 | 100 | | Minus |
BS06877.pep Sequence
Translation from 16 to 1428
> BS06877.pep
MAGIQLQSGCTMVVTVVLLLQVLVMDQVLGQGPPQTQVCPEQSEIAPCIC
TVKKNGLDILCETTDLAHITKSMGTLKGKSPIIFYLKLRHNNLPKLQGFV
FLALDIRHLTIHNSSLAAIEENALSSLGAGLTQLDVSLNQMKTVPSQALQ
HLFHLLILNLNHNKITVIHNNAFEGLETLEILTLYENKITQIDPEAFRGL
EDHIKRLNLGGNDLTNIPQKALSILSTLKKLEIQENKIRTISEGDFEGLQ
SLDSLILAHNMITTVPANVFSHLTLLNSLELEGNKISVIDKDAFKGLEEN
LQYLRLGDNQIHTIPSEALRPLHRLRHLDLRNNNINVLAEDAFTGFGDSL
TFLNLQKNDIKVLPSLLFENLNSLETLNLQNNKLQRIPQDIMEPVIDTLR
IIDITDNPLNCSCELTWFPKLLEDLKNKDDEMSQKKKPLCHMSLDNREYF
VQAMPTEKMHCAGLNIIGNP*
BS06877.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14762-PA | 470 | CG14762-PA | 1..470 | 1..470 | 2407 | 100 | Plus |
CG14762-PB | 498 | CG14762-PB | 1..470 | 1..470 | 2387 | 99.1 | Plus |
caps-PB | 540 | CG11282-PB | 74..410 | 106..422 | 388 | 32.1 | Plus |
caps-PA | 540 | CG11282-PA | 74..410 | 106..422 | 388 | 32.1 | Plus |
caps-PD | 780 | CG11282-PD | 74..410 | 106..422 | 388 | 32.1 | Plus |
caps-PB | 540 | CG11282-PB | 172..414 | 86..333 | 179 | 27.9 | Plus |
caps-PA | 540 | CG11282-PA | 172..414 | 86..333 | 179 | 27.9 | Plus |