Clone BS06877 Report

Search the DGRC for BS06877

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:68
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG14762-RA
Protein status:BS06877.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06877.3prime Sequence

950 bp (807 high quality bases) assembled on 2005-12-04

> BS06877.3prime
ATGGTCTAGAAAGCTTTCACGGATTCCCTATAATATTGAGGCCGGCGCAG
TGCATCTTCTCGGTGGGCATGGCCTGCACGAAGTACTCGCGGTTGTCCAG
CGACATGTGGCACAGCGGCTTCTTCTTCTGCGACATTTCGTCGTCCTTGT
TCTTCAGGTCCTCCAGCAGCTTGGGGAACCAGGTCAGCTCGCAGGAGCAG
TTCAGCGGGTTATCGGTGATATCGATGATGCGAAGGGTGTCGATGACGGG
CTCCATTATGTCCTGCGGAATGCGCTGCAACTTGTTGTTCTGCAGGTTCA
GCGTTTCCAGCGAGTTGAGGTTCTCAAACAGAAGACTGGGCAGAACCTTG
ATGTCGTTCTTCTGCAGGTTGAGGAAAGTCAGGGAATCTCCAAAGCCAGT
GAAGGCATCTTCAGCCAAAACATTGATATTGTTGTTGCGCAAGTCCAAGT
GGCGAAGGCGGTGCAGCGGACGCAGTGCCTCGCTGGGAATAGTGTGGATC
TGGTTATCACCCAGGCGCAGATATTGCAGGTTCTCCTCTAGGCCCTTGAA
GGCATCCTTGTCAATCACACTGATCTTATTGCCCTCCAGCTCCAAGGAGT
TTAGCAGGGTGAGGTGACTAAACACATTGGCAGGCACGGTGGTGATCATG
TTGTGGGCCAAAATCAATGAGTCCAGGCTCTGCAAGCCTTCGAAATCGCC
TTCGCTGATAGTTCGTATCTTGTTCTCCTGAATCTCCAGTTTCTTTAAGG
TGCTCAAAATGGAAAGAGCTTTCTGCGGGATATTGGTAAGATCGTTGCCA
CCCAAATTCAGGCGCTTAATATGGTCCCTCAGTCCTCGGAAAGCCTCGGG
ATCGATCTGTGTAATCTTGTTCTCGTAGAGCGTCAGAATCTCCAGGGGTC
TCAGTCCCTCGAANGCATTGTTGTGGATCACGGTGATTTTATTGTGGGTC

BS06877.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG14762-PA 1413 CG14762-RA 603..1413 827..17 4055 100 Minus
CG14762-PA 1413 CG14762-RA 533..599 897..831 335 100 Minus
CG14762-PA 1413 CG14762-RA 483..528 947..902 211 97.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:44:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG14762-RA 3658 CG14762-RA 1319..2250 947..16 4559 99.5 Minus
CG14762-RB 3801 CG14762-RB 1319..2231 947..35 4464 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8011401..8011582 354..535 910 100 Plus
2R 25286936 2R 8010914..8011093 35..214 900 100 Plus
2R 25286936 2R 8011643..8011797 535..689 775 100 Plus
2R 25286936 2R 8011172..8011311 214..353 700 100 Plus
2R 25286936 2R 8011865..8012002 687..824 690 100 Plus
2R 25286936 2R 8012066..8012182 831..947 514 95.7 Plus
Blast to na_te.dros performed on 2015-02-12 00:44:02 has no hits.

BS06877.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:54:59 Download gff for BS06877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14762-PA 480..1413 17..950 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:47 Download gff for BS06877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14762-PA 480..1413 17..950 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:46:23 Download gff for BS06877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14762-RA 1316..2252 11..950 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:10:04 Download gff for BS06877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14762-RA 1316..2252 11..950 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:10:04 Download gff for BS06877.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8011401..8011581 354..534 100 <- Plus
2R 8011643..8011795 535..687 100 <- Plus
2R 8011866..8012002 688..824 100 <- Plus
2R 8012056..8012185 825..950 93   Plus
2R 8010914..8011092 35..213 100 <- Plus
2R 8011172..8011311 214..353 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:46:23 Download gff for BS06877.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3898419..3898597 35..213 100 <- Plus
arm_2R 3898677..3898816 214..353 100 <- Plus
arm_2R 3898906..3899086 354..534 100 <- Plus
arm_2R 3899148..3899300 535..687 100 <- Plus
arm_2R 3899371..3899507 688..824 100 <- Plus
arm_2R 3899561..3899690 825..950 93   Plus

BS06877.5prime Sequence

932 bp (813 high quality bases) assembled on 2005-12-04

> BS06877.5prime
GAAGTTATCAGTCGACATGGCGGGAATTCAGCTGCAATCGGGATGCACGA
TGGTCGTGACGGTGGTGCTCCTGCTGCAGGTGCTTGTGATGGACCAGGTG
CTCGGCCAGGGTCCACCGCAGACTCAAGTGTGTCCGGAGCAGAGCGAGAT
CGCGCCCTGCATCTGCACGGTGAAGAAGAACGGGCTGGACATCCTGTGCG
AGACCACCGATCTGGCGCACATCACCAAGTCGATGGGCACGCTGAAGGGC
AAGAGTCCCATCATCTTCTACCTGAAGCTTCGCCACAACAATCTGCCCAA
GCTGCAGGGCTTCGTCTTCCTGGCCCTTGACATCCGTCACCTGACCATCC
ACAACAGCAGCCTGGCGGCCATCGAGGAGAACGCCCTCAGCTCGCTGGGA
GCGGGACTGACGCAGCTGGATGTGTCCCTCAACCAAATGAAGACGGTGCC
CTCGCAGGCTCTGCAACATCTGTTCCACCTGTTGATCCTTAATCTGAACC
ACAATAAAATCACCGTGATCCACAACAATGCCTTCGAGGGACTGGAGACC
CTGGAGATTCTGACGCTCTACGAGAACAAGATTACACAGATCGATCCCGA
GGCTTTCCGAGGACTTGAGGACCATATTAAGCGCCTGAATTTGGGTGGCA
ACGATCTTACCAATATCCCGCAGAAAGCTCTTTCCATTTTGAGCACCTTA
AAGAAACTGGAGATTCAGGAGAACAAGATACGAACTATCAGCGAAGGCGA
TTTCGAAGGCTTGCAGAGCCTGGACTCATTGATTTTGGCCCACAACATGA
TCACCACCGTGCCTGCCCATGTGTTTAGTCACCTCACCCTGCTAAACTCC
TTGGAGCTGGGAGGCAATAAGATCAGTGTGATTGACAAGGATGCCTTTCA
GGGGCTAGAGGAGAACCTGCAATATCTGCGCC

BS06877.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG14762-PA 1413 CG14762-RA 1..916 17..932 4430 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG14762-RB 3801 CG14762-RB 836..1752 16..932 4495 99.3 Plus
CG14762-RA 3658 CG14762-RA 836..1752 16..932 4495 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:41:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8012346..8012729 399..16 1920 100 Minus
2R 25286936 2R 8012060..8012283 621..398 1120 100 Minus
2R 25286936 2R 8011865..8012002 759..622 690 100 Minus
2R 25286936 2R 8011643..8011797 911..757 685 96.1 Minus
Blast to na_te.dros performed on 2015-02-12 00:41:10 has no hits.

BS06877.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:55:01 Download gff for BS06877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14762-PA 1..916 17..932 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:48 Download gff for BS06877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14762-PA 1..916 17..932 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:01:59 Download gff for BS06877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14762-RA 832..1752 8..932 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:09:03 Download gff for BS06877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14762-RA 832..1752 8..932 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:09:03 Download gff for BS06877.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8011561..8011581 912..932 100 <- Minus
2R 8011643..8011795 759..911 96 <- Minus
2R 8011866..8012002 622..758 100 <- Minus
2R 8012060..8012282 399..621 100 <- Minus
2R 8012347..8012733 8..398 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:01:59 Download gff for BS06877.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3899066..3899086 912..932 100 <- Minus
arm_2R 3899148..3899300 759..911 96 <- Minus
arm_2R 3899371..3899507 622..758 100 <- Minus
arm_2R 3899565..3899787 399..621 100 <- Minus
arm_2R 3899852..3900238 8..398 98   Minus

BS06877.complete Sequence

1445 bp (1445 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635654

> BS06877.complete
GAAGTTATCAGTCGACATGGCGGGAATTCAGCTGCAATCGGGATGCACGA
TGGTCGTGACGGTGGTGCTCCTGCTGCAGGTGCTTGTGATGGACCAGGTG
CTCGGCCAGGGTCCACCGCAGACTCAAGTGTGTCCGGAGCAGAGCGAGAT
CGCGCCCTGCATCTGCACGGTGAAGAAGAACGGGCTGGACATCCTGTGCG
AGACCACCGATCTGGCGCACATCACCAAGTCGATGGGCACGCTGAAGGGC
AAGAGTCCCATCATCTTCTACCTGAAGCTTCGCCACAACAATCTGCCCAA
GCTGCAGGGCTTCGTCTTCCTGGCCCTTGACATCCGTCACCTGACCATCC
ACAACAGCAGCCTGGCGGCCATCGAGGAGAACGCCCTCAGCTCGCTGGGA
GCGGGACTGACGCAGCTGGATGTGTCCCTCAACCAAATGAAGACGGTGCC
CTCGCAGGCTCTGCAACATCTGTTCCACCTGTTGATCCTTAATCTGAACC
ACAATAAAATCACCGTGATCCACAACAATGCCTTCGAGGGACTGGAGACC
CTGGAGATTCTGACGCTCTACGAGAACAAGATTACACAGATCGATCCCGA
GGCTTTCCGAGGACTTGAGGACCATATTAAGCGCCTGAATTTGGGTGGCA
ACGATCTTACCAATATCCCGCAGAAAGCTCTTTCCATTTTGAGCACCTTA
AAGAAACTGGAGATTCAGGAGAACAAGATACGAACTATCAGCGAAGGCGA
TTTCGAAGGCTTGCAGAGCCTGGACTCATTGATTTTGGCCCACAACATGA
TCACCACCGTGCCTGCCAATGTGTTTAGTCACCTCACCCTGCTAAACTCC
TTGGAGCTGGAGGGCAATAAGATCAGTGTGATTGACAAGGATGCCTTCAA
GGGCCTAGAGGAGAACCTGCAATATCTGCGCCTGGGTGATAACCAGATCC
ACACTATTCCCAGCGAGGCACTGCGTCCGCTGCACCGCCTTCGCCACTTG
GACTTGCGCAACAACAATATCAATGTTTTGGCTGAAGATGCCTTCACTGG
CTTTGGAGATTCCCTGACTTTCCTCAACCTGCAGAAGAACGACATCAAGG
TTCTGCCCAGTCTTCTGTTTGAGAACCTCAACTCGCTGGAAACGCTGAAC
CTGCAGAACAACAAGTTGCAGCGCATTCCGCAGGACATAATGGAGCCCGT
CATCGACACCCTTCGCATCATCGATATCACCGATAACCCGCTGAACTGCT
CCTGCGAGCTGACCTGGTTCCCCAAGCTGCTGGAGGACCTGAAGAACAAG
GACGACGAAATGTCGCAGAAGAAGAAGCCGCTGTGCCACATGTCGCTGGA
CAACCGCGAGTACTTCGTGCAGGCCATGCCCACCGAGAAGATGCACTGCG
CCGGCCTCAATATTATAGGGAATCCGTGAAAGCTTTCTAGACCAT

BS06877.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG14762-RA 1413 CG14762-PA 1..1413 17..1429 7065 100 Plus
CG14762-RB 1497 CG14762-PB 1..1395 17..1411 6975 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:48:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG14762-RA 3658 CG14762-RA 836..2250 16..1430 7075 100 Plus
CG14762-RB 3801 CG14762-RB 836..2231 16..1411 6980 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8012346..8012729 399..16 1920 100 Minus
2R 25286936 2R 8012060..8012283 621..398 1120 100 Minus
2R 25286936 2R 8011401..8011582 1092..911 910 100 Minus
2R 25286936 2R 8010914..8011093 1411..1232 900 100 Minus
2R 25286936 2R 8011643..8011797 911..757 775 100 Minus
2R 25286936 2R 8011172..8011311 1232..1093 700 100 Minus
2R 25286936 2R 8011865..8012002 759..622 690 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:48:18 has no hits.

BS06877.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:52 Download gff for BS06877.complete
Subject Subject Range Query Range Percent Splice Strand
CG14762-RA 1..1413 17..1429 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:30 Download gff for BS06877.complete
Subject Subject Range Query Range Percent Splice Strand
CG14762-RA 831..2251 8..1435 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:26 Download gff for BS06877.complete
Subject Subject Range Query Range Percent Splice Strand
CG14762-RA 837..2248 17..1428 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:52 Download gff for BS06877.complete
Subject Subject Range Query Range Percent Splice Strand
CG14762-RA 831..2251 8..1435 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:37 Download gff for BS06877.complete
Subject Subject Range Query Range Percent Splice Strand
CG14762-RA 837..2248 17..1428 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:37 Download gff for BS06877.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8012347..8012728 17..398 100   Minus
2R 8012060..8012282 399..621 100 <- Minus
2R 8011401..8011581 912..1092 100 <- Minus
2R 8011643..8011795 759..911 100 <- Minus
2R 8011866..8012002 622..758 100 <- Minus
2R 8010914..8011092 1233..1411 100 <- Minus
2R 8011172..8011311 1093..1232 100 <- Minus
2R 8010529..8010545 1412..1428 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:26 Download gff for BS06877.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3898034..3898050 1412..1428 100 <- Minus
arm_2R 3898419..3898597 1233..1411 100 <- Minus
arm_2R 3898677..3898816 1093..1232 100 <- Minus
arm_2R 3898906..3899086 912..1092 100 <- Minus
arm_2R 3899148..3899300 759..911 100 <- Minus
arm_2R 3899371..3899507 622..758 100 <- Minus
arm_2R 3899565..3899787 399..621 100 <- Minus
arm_2R 3899852..3900233 17..398 100   Minus

BS06877.pep Sequence

Translation from 16 to 1428

> BS06877.pep
MAGIQLQSGCTMVVTVVLLLQVLVMDQVLGQGPPQTQVCPEQSEIAPCIC
TVKKNGLDILCETTDLAHITKSMGTLKGKSPIIFYLKLRHNNLPKLQGFV
FLALDIRHLTIHNSSLAAIEENALSSLGAGLTQLDVSLNQMKTVPSQALQ
HLFHLLILNLNHNKITVIHNNAFEGLETLEILTLYENKITQIDPEAFRGL
EDHIKRLNLGGNDLTNIPQKALSILSTLKKLEIQENKIRTISEGDFEGLQ
SLDSLILAHNMITTVPANVFSHLTLLNSLELEGNKISVIDKDAFKGLEEN
LQYLRLGDNQIHTIPSEALRPLHRLRHLDLRNNNINVLAEDAFTGFGDSL
TFLNLQKNDIKVLPSLLFENLNSLETLNLQNNKLQRIPQDIMEPVIDTLR
IIDITDNPLNCSCELTWFPKLLEDLKNKDDEMSQKKKPLCHMSLDNREYF
VQAMPTEKMHCAGLNIIGNP*

BS06877.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG14762-PA 470 CG14762-PA 1..470 1..470 2407 100 Plus
CG14762-PB 498 CG14762-PB 1..470 1..470 2387 99.1 Plus
caps-PB 540 CG11282-PB 74..410 106..422 388 32.1 Plus
caps-PA 540 CG11282-PA 74..410 106..422 388 32.1 Plus
caps-PD 780 CG11282-PD 74..410 106..422 388 32.1 Plus
caps-PB 540 CG11282-PB 172..414 86..333 179 27.9 Plus
caps-PA 540 CG11282-PA 172..414 86..333 179 27.9 Plus