Clone Sequence Records
BS06881.5prime Sequence
594 bp (593 high quality bases) assembled on 2005-12-04
> BS06881.5prime
GAAGTTATCAGTCGACATGTCCGTAGTGCCACTGATGTTCCGTGACTGGT
GGGATGAGCTCGACTTTCCAATGCGCACCTCGCGCCTCTTGGACCAGCAC
TTCGGTCAGGGACTGAAGAGGGATGACCTCATGTCCTCCGTGTGGAACTC
CCGCCCCACAGTGCTGCGATCGGGATACCTGCGCCCCTGGCACACGAACA
GCCTGCAGAAGCAGGAGTCCGGTTCCACCCTCAACATCGACAGCGAGAAG
TTCGAGGTCATTCTGGATGTGCAGCAGTTCTCGCCATCCGAGATCACCGT
CAAGGTGGCCGACAAGTTCGTCATCGTGGAGGGAAAGCATGAGGAGAAGC
AGGACGAGCACGGATATGTCTCCCGCCAGTTCTCCAGACGCTACCAGCTG
CCAAGTGATGTCAACCCCGACACGGTCACATCGTCCCTCTCCTCCGATGG
CCTGCTGACCATCAAGGCGCCAATGAAGGCGCTGCCTCCTCCGCAGACTG
AACGCCTTGTGCAGATCACACAGACTGGTCCCTCCTCCAAGGAGGACAAC
GCCAAGAAGGTGGAGACCTCCACCGCCTAGAAGCTTTCTAGACC
BS06881.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4533-PA | 564 | l(2)efl-RA | 1..564 | 17..580 | 2820 | 100 | Plus |
CG4533-PB | 438 | l(2)efl-RB | 1..392 | 17..408 | 1960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:10:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)efl-RC | 741 | CG4533-RC | 72..635 | 17..580 | 2820 | 100 | Plus |
l(2)efl-RA | 738 | CG4533-RA | 69..632 | 17..580 | 2820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:10:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23684991..23685382 | 408..17 | 1960 | 100 | Minus |
2R | 25286936 | 2R | 23684757..23684932 | 580..405 | 880 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:10:34 has no hits.
BS06881.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:55:07 Download gff for
BS06881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4533-PA | 1..564 | 17..580 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:57 Download gff for
BS06881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4533-PA | 1..564 | 17..580 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:13:28 Download gff for
BS06881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)efl-RA | 69..636 | 17..585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:40:26 Download gff for
BS06881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)efl-RA | 69..636 | 17..585 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:40:26 Download gff for
BS06881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23684753..23684932 | 405..585 | 98 | <- | Minus |
2R | 23684995..23685387 | 10..404 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:13:28 Download gff for
BS06881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19572276..19572455 | 405..585 | 98 | <- | Minus |
arm_2R | 19572518..19572910 | 10..404 | 99 | | Minus |
BS06881.3prime Sequence
594 bp (593 high quality bases) assembled on 2005-12-04
> BS06881.3prime
ATGGTCTAGAAAGCTTCTAGGCGGTGGAGGTCTCCACCTTCTTGGCGTTG
TCCTCCTTGGAGGAGGGACCAGTCTGTGTGATCTGCACAAGGCGTTCAGT
CTGCGGAGGAGGCAGCGCCTTCATTGGCGCCTTGATGGTCAGCAGGCCAT
CGGAGGAGAGGGACGATGTGACCGTGTCGGGGTTGACATCACTTGGCAGC
TGGTAGCGTCTGGAGAACTGGCGGGAGACATATCCGTGCTCGTCCTGCTT
CTCCTCATGCTTTCCCTCCACGATGACGAACTTGTCGGCCACCTTGACGG
TGATCTCGGATGGCGAGAACTGCTGCACATCCAGAATGACCTCGAACTTC
TCGCTGTCGATGTTGAGGGTGGAACCGGACTCCTGCTTCTGCAGGCTGTT
CGTGTGCCAGGGGCGCAGGTATCCCGATCGCAGCACTGTGGGGCGGGAGT
TCCACACGGAGGACATGAGGTCATCCCTCTTCAGTCCCTGACCGAAGTGC
TGGTCCAAGAGGCGCGAGGTGCGCATTGGAAAGTCGAGCTCATCCCACCA
GTCACGGAACATCAGTGGCACTACGGACATGTCGACTGATAACT
BS06881.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4533-PA | 564 | l(2)efl-RA | 1..564 | 580..17 | 2820 | 100 | Minus |
CG4533-PB | 438 | l(2)efl-RB | 1..392 | 580..189 | 1960 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:17:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)efl-RC | 741 | CG4533-RC | 72..635 | 580..17 | 2820 | 100 | Minus |
l(2)efl-RA | 738 | CG4533-RA | 69..632 | 580..17 | 2820 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:17:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23684991..23685382 | 189..580 | 1960 | 100 | Plus |
2R | 25286936 | 2R | 23684757..23684932 | 17..192 | 880 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:17:28 has no hits.
BS06881.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:55:06 Download gff for
BS06881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4533-PA | 1..564 | 17..580 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:56 Download gff for
BS06881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4533-PA | 1..564 | 17..580 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:42:25 Download gff for
BS06881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)efl-RA | 69..636 | 12..580 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:50:47 Download gff for
BS06881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)efl-RA | 69..636 | 12..580 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:50:47 Download gff for
BS06881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23684753..23684932 | 12..192 | 98 | <- | Plus |
2R | 23684995..23685387 | 193..587 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:42:25 Download gff for
BS06881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19572276..19572455 | 12..192 | 98 | <- | Plus |
arm_2R | 19572518..19572910 | 193..587 | 99 | | Plus |
BS06881.complete Sequence
596 bp (596 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635655
> BS06881.complete
GAAGTTATCAGTCGACATGTCCGTAGTGCCACTGATGTTCCGTGACTGGT
GGGATGAGCTCGACTTTCCAATGCGCACCTCGCGCCTCTTGGACCAGCAC
TTCGGTCAGGGACTGAAGAGGGATGACCTCATGTCCTCCGTGTGGAACTC
CCGCCCCACAGTGCTGCGATCGGGATACCTGCGCCCCTGGCACACGAACA
GCCTGCAGAAGCAGGAGTCCGGTTCCACCCTCAACATCGACAGCGAGAAG
TTCGAGGTCATTCTGGATGTGCAGCAGTTCTCGCCATCCGAGATCACCGT
CAAGGTGGCCGACAAGTTCGTCATCGTGGAGGGAAAGCATGAGGAGAAGC
AGGACGAGCACGGATATGTCTCCCGCCAGTTCTCCAGACGCTACCAGCTG
CCAAGTGATGTCAACCCCGACACGGTCACATCGTCCCTCTCCTCCGATGG
CCTGCTGACCATCAAGGCGCCAATGAAGGCGCTGCCTCCTCCGCAGACTG
AACGCCTTGTGCAGATCACACAGACTGGTCCCTCCTCCAAGGAGGACAAC
GCCAAGAAGGTGGAGACCTCCACCGCCTAGAAGCTTTCTAGACCAT
BS06881.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:06:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)efl-RC | 564 | CG4533-PC | 1..564 | 17..580 | 2820 | 100 | Plus |
l(2)efl-RA | 564 | CG4533-PA | 1..564 | 17..580 | 2820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:06:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)efl-RC | 741 | CG4533-RC | 72..635 | 17..580 | 2820 | 100 | Plus |
l(2)efl-RA | 738 | CG4533-RA | 69..632 | 17..580 | 2820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:06:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23684991..23685382 | 408..17 | 1960 | 100 | Minus |
2R | 25286936 | 2R | 23684757..23684932 | 580..405 | 880 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 11:06:21 has no hits.
BS06881.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:26 Download gff for
BS06881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)efl-RA | 1..564 | 17..580 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:07 Download gff for
BS06881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)efl-RA | 66..633 | 17..585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:45 Download gff for
BS06881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)efl-RA | 69..632 | 17..580 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:26 Download gff for
BS06881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)efl-RA | 66..633 | 17..585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:53 Download gff for
BS06881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)efl-RA | 69..632 | 17..580 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:53 Download gff for
BS06881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23684757..23684932 | 405..580 | 100 | <- | Minus |
2R | 23684995..23685382 | 17..404 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:45 Download gff for
BS06881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19572280..19572455 | 405..580 | 100 | <- | Minus |
arm_2R | 19572518..19572905 | 17..404 | 100 | | Minus |
BS06881.pep Sequence
Translation from 16 to 579
> BS06881.pep
MSVVPLMFRDWWDELDFPMRTSRLLDQHFGQGLKRDDLMSSVWNSRPTVL
RSGYLRPWHTNSLQKQESGSTLNIDSEKFEVILDVQQFSPSEITVKVADK
FVIVEGKHEEKQDEHGYVSRQFSRRYQLPSDVNPDTVTSSLSSDGLLTIK
APMKALPPPQTERLVQITQTGPSSKEDNAKKVETSTA*
BS06881.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)efl-PC | 187 | CG4533-PC | 1..187 | 1..187 | 970 | 100 | Plus |
l(2)efl-PA | 187 | CG4533-PA | 1..187 | 1..187 | 970 | 100 | Plus |
Hsp27-PB | 213 | CG4466-PB | 1..185 | 1..173 | 312 | 41.4 | Plus |
Hsp27-PA | 213 | CG4466-PA | 1..185 | 1..173 | 312 | 41.4 | Plus |
Hsp23-PB | 186 | CG4463-PB | 60..179 | 68..183 | 275 | 48.3 | Plus |