Clone BS06881 Report

Search the DGRC for BS06881

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:68
Well:81
Vector:pDNR-Dual
Associated Gene/Transcriptl(2)efl-RA
Protein status:BS06881.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06881.5prime Sequence

594 bp (593 high quality bases) assembled on 2005-12-04

> BS06881.5prime
GAAGTTATCAGTCGACATGTCCGTAGTGCCACTGATGTTCCGTGACTGGT
GGGATGAGCTCGACTTTCCAATGCGCACCTCGCGCCTCTTGGACCAGCAC
TTCGGTCAGGGACTGAAGAGGGATGACCTCATGTCCTCCGTGTGGAACTC
CCGCCCCACAGTGCTGCGATCGGGATACCTGCGCCCCTGGCACACGAACA
GCCTGCAGAAGCAGGAGTCCGGTTCCACCCTCAACATCGACAGCGAGAAG
TTCGAGGTCATTCTGGATGTGCAGCAGTTCTCGCCATCCGAGATCACCGT
CAAGGTGGCCGACAAGTTCGTCATCGTGGAGGGAAAGCATGAGGAGAAGC
AGGACGAGCACGGATATGTCTCCCGCCAGTTCTCCAGACGCTACCAGCTG
CCAAGTGATGTCAACCCCGACACGGTCACATCGTCCCTCTCCTCCGATGG
CCTGCTGACCATCAAGGCGCCAATGAAGGCGCTGCCTCCTCCGCAGACTG
AACGCCTTGTGCAGATCACACAGACTGGTCCCTCCTCCAAGGAGGACAAC
GCCAAGAAGGTGGAGACCTCCACCGCCTAGAAGCTTTCTAGACC

BS06881.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG4533-PA 564 l(2)efl-RA 1..564 17..580 2820 100 Plus
CG4533-PB 438 l(2)efl-RB 1..392 17..408 1960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:10:37
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)efl-RC 741 CG4533-RC 72..635 17..580 2820 100 Plus
l(2)efl-RA 738 CG4533-RA 69..632 17..580 2820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23684991..23685382 408..17 1960 100 Minus
2R 25286936 2R 23684757..23684932 580..405 880 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:10:34 has no hits.

BS06881.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:55:07 Download gff for BS06881.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4533-PA 1..564 17..580 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:57 Download gff for BS06881.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4533-PA 1..564 17..580 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:13:28 Download gff for BS06881.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)efl-RA 69..636 17..585 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:40:26 Download gff for BS06881.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)efl-RA 69..636 17..585 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:40:26 Download gff for BS06881.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23684753..23684932 405..585 98 <- Minus
2R 23684995..23685387 10..404 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:13:28 Download gff for BS06881.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19572276..19572455 405..585 98 <- Minus
arm_2R 19572518..19572910 10..404 99   Minus

BS06881.3prime Sequence

594 bp (593 high quality bases) assembled on 2005-12-04

> BS06881.3prime
ATGGTCTAGAAAGCTTCTAGGCGGTGGAGGTCTCCACCTTCTTGGCGTTG
TCCTCCTTGGAGGAGGGACCAGTCTGTGTGATCTGCACAAGGCGTTCAGT
CTGCGGAGGAGGCAGCGCCTTCATTGGCGCCTTGATGGTCAGCAGGCCAT
CGGAGGAGAGGGACGATGTGACCGTGTCGGGGTTGACATCACTTGGCAGC
TGGTAGCGTCTGGAGAACTGGCGGGAGACATATCCGTGCTCGTCCTGCTT
CTCCTCATGCTTTCCCTCCACGATGACGAACTTGTCGGCCACCTTGACGG
TGATCTCGGATGGCGAGAACTGCTGCACATCCAGAATGACCTCGAACTTC
TCGCTGTCGATGTTGAGGGTGGAACCGGACTCCTGCTTCTGCAGGCTGTT
CGTGTGCCAGGGGCGCAGGTATCCCGATCGCAGCACTGTGGGGCGGGAGT
TCCACACGGAGGACATGAGGTCATCCCTCTTCAGTCCCTGACCGAAGTGC
TGGTCCAAGAGGCGCGAGGTGCGCATTGGAAAGTCGAGCTCATCCCACCA
GTCACGGAACATCAGTGGCACTACGGACATGTCGACTGATAACT

BS06881.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG4533-PA 564 l(2)efl-RA 1..564 580..17 2820 100 Minus
CG4533-PB 438 l(2)efl-RB 1..392 580..189 1960 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:17:31
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)efl-RC 741 CG4533-RC 72..635 580..17 2820 100 Minus
l(2)efl-RA 738 CG4533-RA 69..632 580..17 2820 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:17:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23684991..23685382 189..580 1960 100 Plus
2R 25286936 2R 23684757..23684932 17..192 880 100 Plus
Blast to na_te.dros performed on 2015-02-06 12:17:28 has no hits.

BS06881.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:55:06 Download gff for BS06881.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4533-PA 1..564 17..580 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:38:56 Download gff for BS06881.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4533-PA 1..564 17..580 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:42:25 Download gff for BS06881.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)efl-RA 69..636 12..580 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:50:47 Download gff for BS06881.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)efl-RA 69..636 12..580 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:50:47 Download gff for BS06881.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23684753..23684932 12..192 98 <- Plus
2R 23684995..23685387 193..587 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:42:25 Download gff for BS06881.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19572276..19572455 12..192 98 <- Plus
arm_2R 19572518..19572910 193..587 99   Plus

BS06881.complete Sequence

596 bp (596 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635655

> BS06881.complete
GAAGTTATCAGTCGACATGTCCGTAGTGCCACTGATGTTCCGTGACTGGT
GGGATGAGCTCGACTTTCCAATGCGCACCTCGCGCCTCTTGGACCAGCAC
TTCGGTCAGGGACTGAAGAGGGATGACCTCATGTCCTCCGTGTGGAACTC
CCGCCCCACAGTGCTGCGATCGGGATACCTGCGCCCCTGGCACACGAACA
GCCTGCAGAAGCAGGAGTCCGGTTCCACCCTCAACATCGACAGCGAGAAG
TTCGAGGTCATTCTGGATGTGCAGCAGTTCTCGCCATCCGAGATCACCGT
CAAGGTGGCCGACAAGTTCGTCATCGTGGAGGGAAAGCATGAGGAGAAGC
AGGACGAGCACGGATATGTCTCCCGCCAGTTCTCCAGACGCTACCAGCTG
CCAAGTGATGTCAACCCCGACACGGTCACATCGTCCCTCTCCTCCGATGG
CCTGCTGACCATCAAGGCGCCAATGAAGGCGCTGCCTCCTCCGCAGACTG
AACGCCTTGTGCAGATCACACAGACTGGTCCCTCCTCCAAGGAGGACAAC
GCCAAGAAGGTGGAGACCTCCACCGCCTAGAAGCTTTCTAGACCAT

BS06881.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:06:22
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)efl-RC 564 CG4533-PC 1..564 17..580 2820 100 Plus
l(2)efl-RA 564 CG4533-PA 1..564 17..580 2820 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)efl-RC 741 CG4533-RC 72..635 17..580 2820 100 Plus
l(2)efl-RA 738 CG4533-RA 69..632 17..580 2820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23684991..23685382 408..17 1960 100 Minus
2R 25286936 2R 23684757..23684932 580..405 880 100 Minus
Blast to na_te.dros performed on 2014-11-27 11:06:21 has no hits.

BS06881.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:26 Download gff for BS06881.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)efl-RA 1..564 17..580 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:07 Download gff for BS06881.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)efl-RA 66..633 17..585 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:45 Download gff for BS06881.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)efl-RA 69..632 17..580 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:26 Download gff for BS06881.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)efl-RA 66..633 17..585 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:53 Download gff for BS06881.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)efl-RA 69..632 17..580 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:53 Download gff for BS06881.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23684757..23684932 405..580 100 <- Minus
2R 23684995..23685382 17..404 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:45 Download gff for BS06881.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19572280..19572455 405..580 100 <- Minus
arm_2R 19572518..19572905 17..404 100   Minus

BS06881.pep Sequence

Translation from 16 to 579

> BS06881.pep
MSVVPLMFRDWWDELDFPMRTSRLLDQHFGQGLKRDDLMSSVWNSRPTVL
RSGYLRPWHTNSLQKQESGSTLNIDSEKFEVILDVQQFSPSEITVKVADK
FVIVEGKHEEKQDEHGYVSRQFSRRYQLPSDVNPDTVTSSLSSDGLLTIK
APMKALPPPQTERLVQITQTGPSSKEDNAKKVETSTA*

BS06881.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:30
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)efl-PC 187 CG4533-PC 1..187 1..187 970 100 Plus
l(2)efl-PA 187 CG4533-PA 1..187 1..187 970 100 Plus
Hsp27-PB 213 CG4466-PB 1..185 1..173 312 41.4 Plus
Hsp27-PA 213 CG4466-PA 1..185 1..173 312 41.4 Plus
Hsp23-PB 186 CG4463-PB 60..179 68..183 275 48.3 Plus