Clone BS06883 Report

Search the DGRC for BS06883

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:68
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptOat-RA
Protein status:BS06883.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06883.3prime Sequence

829 bp (815 high quality bases) assembled on 2005-12-04

> BS06883.3prime
ATGGTCTAGAAAGCTTCTACATGGACAGAATGGTTTTCCTGATTATGTCG
ATGCTCTCGCGCATTTGGGTCTCATTGATGACCAGTGGAGGAGCGAAGCG
AATAATGTCGCCATGGGTGGGCTTGGCCAGGAGTCCGTTCTCCTTTAGCC
TGAGGCACACCTCCCAGGCATCGAACTTCTGGTTAATAACGATGGCGTTG
AGCAGACCCTTTCCGCGCACCACCGACACCACATCCTTGGGCAGCGTGGA
CAGCTCGTTGCGCAGCAGGTCACCCATTTTGAAGGCGTTCTCCGCCAGCT
TCTCCTCCTGCAGAACCTCCAAGGCGGCCATGGCCACTCGGCAGCCCAGG
GGGTTGCCTCCGTAGGTGGATCCGTGCTCGCCCGGCTTGATGCACAGCAT
CACCTGGTCGTTGCAGAGAACCGCCGACACGGGATACATTCCTCCGGACA
GTGCTTTTCCCAGGATCAGAATGTCTGGCTGCACCTGCTCGTAGTCCACG
GCCAGCAGCTTTCCAGTTCTGGCCAATCCTGTCTGCACCTCGTCGGCAAT
CCAGAGCACATTGTACTTGGTGCAGAGCTCTCGCACCTTCTTCAGATAGC
CATCACTGGGCACCACCACGCCAGCCTCTCCCTGAATGGGCTCCACCATG
AAGGCGCACACATTCGGATCCTTGAGGGACTCCTCCAGCGCTGACACATT
GTCGTACTCGATCAGCTCGAATCCGGGCATGAAGGGTCCGAATCCCTCGT
AGCTACTGGGATCATTGGAGGCGGACACCGCCGACAGGGTGCGTCCCCAG
AAGTTGTTGCGCGCGAAGATGATCTTTGC

BS06883.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG8782-PA 1296 Oat-RA 484..1296 829..17 4065 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
Oat-RA 1501 CG8782-RA 575..1388 829..16 4070 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19647611..19648262 178..829 3260 100 Plus
3L 28110227 3L 19647393..19647554 16..177 810 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:05:48 has no hits.

BS06883.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:55:10 Download gff for BS06883.3prime
Subject Subject Range Query Range Percent Splice Strand
Oat-PA 484..1296 17..829 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:39:02 Download gff for BS06883.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8782-PA 484..1296 17..829 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:33:20 Download gff for BS06883.3prime
Subject Subject Range Query Range Percent Splice Strand
Oat-RA 575..1391 10..829 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:21:32 Download gff for BS06883.3prime
Subject Subject Range Query Range Percent Splice Strand
Oat-RA 575..1391 10..829 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:21:32 Download gff for BS06883.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19647389..19647554 10..177 98 <- Plus
3L 19647611..19648262 178..829 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:33:20 Download gff for BS06883.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19640489..19640654 10..177 98 <- Plus
arm_3L 19640711..19641362 178..829 100   Plus

BS06883.5prime Sequence

918 bp (846 high quality bases) assembled on 2005-12-04

> BS06883.5prime
GAAGTTATCAGTCGACATGTTCGCCAAGCTATCAGCCCGCGGGATCGCCA
CCCGCATGAGCTTCTTGGCACAGAAGACAGCTTCCCAGGAGACGACGGCC
GCCGCCGGATCCCGTTCCGAACTCGTCTATGCCAGGGAGAACAAGTACGG
CGCCCACAACTACCACCCACTGCCCGTGGCCCTGACCAAGGGCGAGGGCG
TGTTTGTCTGGGATGTGGAGGGCAAGCGCTACTTCGACTATCTGAGCGCC
TACTCGGCGGTCAACCAGGGTCACTGCCATCCCAAGATCGTAGCGGCACT
CACAGCACAGGCCTCCAAGTTGGCCTTGACATCGCGTGCCTTCTATTCGG
ATGTCCTTGGAGAGTACGAGGAGTACGTGACCAAGCTCTTTGGCTTCGAC
AAGGTGCTGCCCATGAACACGGGCGTTGAGGGCGGAGAAACCGCCTGCAA
GTTGGCCCGCAAGTGGGGCTACCTGGAGAAGAAGATACCTGCCAACCAGG
CAAAGATCATCTTCGCGCGCAACAACTTCTGGGGACGCACCCTGTCGGCG
GTGTCCGCCTCCAATGATCCCAGTAGCTACGAGGGATTCGGACCCTTCAT
GCCCGGATTCGAGCTGATCGAGTACGACAATGTGTCAGCGCTGGAGGAGT
CCCTCAAGGATCCGAATGTGTGCGCCTTCATGGTGGAGCCCATTCAGGGA
GAGGCTGGCGTGGTGGTGCCCAGTGATGGCTATCTGAAGAAGGTGCGAGA
GCTCTGCACCAAGTACAATGTGCTCTGGATTGCCGACGAGGTGCAGACAG
GATTGGCCAGAACTGGAAAGCTGCTGGCCGTGGACTACGAGCAGGTGCAG
CCAGACATTCTGATCCTGGGAAAAGCACTGTCCGGAGGAATGTATCCCGT
GTCGGCGGTTCTCTGCAA

BS06883.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG8782-PA 1296 Oat-RA 1..902 17..918 4510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:25:05
Subject Length Description Subject Range Query Range Score Percent Strand
Oat-RA 1501 CG8782-RA 90..993 15..918 4520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:24:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19647844..19648426 918..336 2915 100 Minus
3L 28110227 3L 19649441..19649762 336..15 1610 100 Minus
Blast to na_te.dros performed on 2015-02-04 02:25:00 has no hits.

BS06883.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:55:11 Download gff for BS06883.5prime
Subject Subject Range Query Range Percent Splice Strand
Oat-PA 1..900 17..916 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:39:04 Download gff for BS06883.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8782-PA 1..900 17..916 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:50:11 Download gff for BS06883.5prime
Subject Subject Range Query Range Percent Splice Strand
Oat-RA 82..991 6..916 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:36:24 Download gff for BS06883.5prime
Subject Subject Range Query Range Percent Splice Strand
Oat-RA 82..991 6..916 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:36:24 Download gff for BS06883.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19647846..19648425 337..916 100 <- Minus
3L 19649441..19649770 6..336 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:50:11 Download gff for BS06883.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19640946..19641525 337..916 100 <- Minus
arm_3L 19642541..19642870 6..336 99   Minus

BS06883.complete Sequence

1328 bp (1328 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635656

> BS06883.complete
GAAGTTATCAGTCGACATGTTCGCCAAGCTATCAGCCCGCGGGATCGCCA
CCCGCATGAGCTTCTTGGCACAGAAGACAGCTTCCCAGGAGACGACGGCC
GCCGCCGGATCCCGTTCCGAACTCGTCTATGCCAGGGAGAACAAGTACGG
CGCCCACAACTACCACCCACTGCCCGTGGCCCTGACCAAGGGCGAGGGCG
TGTTTGTCTGGGATGTGGAGGGCAAGCGCTACTTCGACTATCTGAGCGCC
TACTCGGCGGTCAACCAGGGTCACTGCCATCCCAAGATCGTAGCGGCACT
CACAGCACAGGCCTCCAAGTTGGCCTTGACATCGCGTGCCTTCTATTCGG
ATGTCCTTGGAGAGTACGAGGAGTACGTGACCAAGCTCTTTGGCTTCGAC
AAGGTGCTGCCCATGAACACGGGCGTTGAGGGCGGAGAAACCGCCTGCAA
GTTGGCCCGCAAGTGGGGCTACCTGGAGAAGAAGATACCTGCCAACCAGG
CAAAGATCATCTTCGCGCGCAACAACTTCTGGGGACGCACCCTGTCGGCG
GTGTCCGCCTCCAATGATCCCAGTAGCTACGAGGGATTCGGACCCTTCAT
GCCCGGATTCGAGCTGATCGAGTACGACAATGTGTCAGCGCTGGAGGAGT
CCCTCAAGGATCCGAATGTGTGCGCCTTCATGGTGGAGCCCATTCAGGGA
GAGGCTGGCGTGGTGGTGCCCAGTGATGGCTATCTGAAGAAGGTGCGAGA
GCTCTGCACCAAGTACAATGTGCTCTGGATTGCCGACGAGGTGCAGACAG
GATTGGCCAGAACTGGAAAGCTGCTGGCCGTGGACTACGAGCAGGTGCAG
CCAGACATTCTGATCCTGGGAAAAGCACTGTCCGGAGGAATGTATCCCGT
GTCGGCGGTTCTCTGCAACGACCAGGTGATGCTGTGCATCAAGCCGGGCG
AGCACGGATCCACCTACGGAGGCAACCCCCTGGGCTGCCGAGTGGCCATG
GCCGCCTTGGAGGTTCTGCAGGAGGAGAAGCTGGCGGAGAACGCCTTCAA
AATGGGTGACCTGCTGCGCAACGAGCTGTCCACGCTGCCCAAGGATGTGG
TGTCGGTGGTGCGCGGAAAGGGTCTGCTCAACGCCATCGTTATTAACCAG
AAGTTCGATGCCTGGGAGGTGTGCCTCAGGCTAAAGGAGAACGGACTCCT
GGCCAAGCCCACCCATGGCGACATTATTCGCTTCGCTCCTCCACTGGTCA
TCAATGAGACCCAAATGCGCGAGAGCATCGACATAATCAGGAAAACCATT
CTGTCCATGTAGAAGCTTTCTAGACCAT

BS06883.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
Oat-RA 1296 CG8782-PA 1..1296 17..1312 6480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:56:52
Subject Length Description Subject Range Query Range Score Percent Strand
Oat-RA 1501 CG8782-RA 90..1388 15..1313 6495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19647611..19648426 1151..336 4080 100 Minus
3L 28110227 3L 19649441..19649762 336..15 1610 100 Minus
3L 28110227 3L 19647393..19647554 1313..1152 810 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:56:50 has no hits.

BS06883.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:53 Download gff for BS06883.complete
Subject Subject Range Query Range Percent Splice Strand
Oat-RA 1..1296 17..1312 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:32 Download gff for BS06883.complete
Subject Subject Range Query Range Percent Splice Strand
Oat-RA 80..1389 6..1319 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:00 Download gff for BS06883.complete
Subject Subject Range Query Range Percent Splice Strand
Oat-RA 97..1387 22..1312 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:53 Download gff for BS06883.complete
Subject Subject Range Query Range Percent Splice Strand
Oat-RA 80..1389 6..1319 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:40 Download gff for BS06883.complete
Subject Subject Range Query Range Percent Splice Strand
Oat-RA 97..1387 22..1312 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:40 Download gff for BS06883.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19647394..19647554 1152..1312 100 <- Minus
3L 19647611..19648425 337..1151 100 <- Minus
3L 19649441..19649755 22..336 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:00 Download gff for BS06883.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19640494..19640654 1152..1312 100 <- Minus
arm_3L 19640711..19641525 337..1151 100 <- Minus
arm_3L 19642541..19642855 22..336 100   Minus

BS06883.pep Sequence

Translation from 16 to 1311

> BS06883.pep
MFAKLSARGIATRMSFLAQKTASQETTAAAGSRSELVYARENKYGAHNYH
PLPVALTKGEGVFVWDVEGKRYFDYLSAYSAVNQGHCHPKIVAALTAQAS
KLALTSRAFYSDVLGEYEEYVTKLFGFDKVLPMNTGVEGGETACKLARKW
GYLEKKIPANQAKIIFARNNFWGRTLSAVSASNDPSSYEGFGPFMPGFEL
IEYDNVSALEESLKDPNVCAFMVEPIQGEAGVVVPSDGYLKKVRELCTKY
NVLWIADEVQTGLARTGKLLAVDYEQVQPDILILGKALSGGMYPVSAVLC
NDQVMLCIKPGEHGSTYGGNPLGCRVAMAALEVLQEEKLAENAFKMGDLL
RNELSTLPKDVVSVVRGKGLLNAIVINQKFDAWEVCLRLKENGLLAKPTH
GDIIRFAPPLVINETQMRESIDIIRKTILSM*

BS06883.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
Oat-PA 431 CG8782-PA 1..431 1..431 2226 100 Plus
CG11241-PA 508 CG11241-PA 80..500 53..428 372 28 Plus
CG11241-PC 518 CG11241-PC 80..484 53..412 355 28.4 Plus
CG11241-PB 518 CG11241-PB 80..484 53..412 355 28.4 Plus
CG8745-PA 494 CG8745-PA 37..438 49..419 297 25.6 Plus