Clone Sequence Records
BS06883.3prime Sequence
829 bp (815 high quality bases) assembled on 2005-12-04
> BS06883.3prime
ATGGTCTAGAAAGCTTCTACATGGACAGAATGGTTTTCCTGATTATGTCG
ATGCTCTCGCGCATTTGGGTCTCATTGATGACCAGTGGAGGAGCGAAGCG
AATAATGTCGCCATGGGTGGGCTTGGCCAGGAGTCCGTTCTCCTTTAGCC
TGAGGCACACCTCCCAGGCATCGAACTTCTGGTTAATAACGATGGCGTTG
AGCAGACCCTTTCCGCGCACCACCGACACCACATCCTTGGGCAGCGTGGA
CAGCTCGTTGCGCAGCAGGTCACCCATTTTGAAGGCGTTCTCCGCCAGCT
TCTCCTCCTGCAGAACCTCCAAGGCGGCCATGGCCACTCGGCAGCCCAGG
GGGTTGCCTCCGTAGGTGGATCCGTGCTCGCCCGGCTTGATGCACAGCAT
CACCTGGTCGTTGCAGAGAACCGCCGACACGGGATACATTCCTCCGGACA
GTGCTTTTCCCAGGATCAGAATGTCTGGCTGCACCTGCTCGTAGTCCACG
GCCAGCAGCTTTCCAGTTCTGGCCAATCCTGTCTGCACCTCGTCGGCAAT
CCAGAGCACATTGTACTTGGTGCAGAGCTCTCGCACCTTCTTCAGATAGC
CATCACTGGGCACCACCACGCCAGCCTCTCCCTGAATGGGCTCCACCATG
AAGGCGCACACATTCGGATCCTTGAGGGACTCCTCCAGCGCTGACACATT
GTCGTACTCGATCAGCTCGAATCCGGGCATGAAGGGTCCGAATCCCTCGT
AGCTACTGGGATCATTGGAGGCGGACACCGCCGACAGGGTGCGTCCCCAG
AAGTTGTTGCGCGCGAAGATGATCTTTGC
BS06883.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8782-PA | 1296 | Oat-RA | 484..1296 | 829..17 | 4065 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oat-RA | 1501 | CG8782-RA | 575..1388 | 829..16 | 4070 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19647611..19648262 | 178..829 | 3260 | 100 | Plus |
3L | 28110227 | 3L | 19647393..19647554 | 16..177 | 810 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:05:48 has no hits.
BS06883.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:55:10 Download gff for
BS06883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oat-PA | 484..1296 | 17..829 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:39:02 Download gff for
BS06883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8782-PA | 484..1296 | 17..829 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:33:20 Download gff for
BS06883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oat-RA | 575..1391 | 10..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:21:32 Download gff for
BS06883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oat-RA | 575..1391 | 10..829 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:21:32 Download gff for
BS06883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19647389..19647554 | 10..177 | 98 | <- | Plus |
3L | 19647611..19648262 | 178..829 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:33:20 Download gff for
BS06883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19640489..19640654 | 10..177 | 98 | <- | Plus |
arm_3L | 19640711..19641362 | 178..829 | 100 | | Plus |
BS06883.5prime Sequence
918 bp (846 high quality bases) assembled on 2005-12-04
> BS06883.5prime
GAAGTTATCAGTCGACATGTTCGCCAAGCTATCAGCCCGCGGGATCGCCA
CCCGCATGAGCTTCTTGGCACAGAAGACAGCTTCCCAGGAGACGACGGCC
GCCGCCGGATCCCGTTCCGAACTCGTCTATGCCAGGGAGAACAAGTACGG
CGCCCACAACTACCACCCACTGCCCGTGGCCCTGACCAAGGGCGAGGGCG
TGTTTGTCTGGGATGTGGAGGGCAAGCGCTACTTCGACTATCTGAGCGCC
TACTCGGCGGTCAACCAGGGTCACTGCCATCCCAAGATCGTAGCGGCACT
CACAGCACAGGCCTCCAAGTTGGCCTTGACATCGCGTGCCTTCTATTCGG
ATGTCCTTGGAGAGTACGAGGAGTACGTGACCAAGCTCTTTGGCTTCGAC
AAGGTGCTGCCCATGAACACGGGCGTTGAGGGCGGAGAAACCGCCTGCAA
GTTGGCCCGCAAGTGGGGCTACCTGGAGAAGAAGATACCTGCCAACCAGG
CAAAGATCATCTTCGCGCGCAACAACTTCTGGGGACGCACCCTGTCGGCG
GTGTCCGCCTCCAATGATCCCAGTAGCTACGAGGGATTCGGACCCTTCAT
GCCCGGATTCGAGCTGATCGAGTACGACAATGTGTCAGCGCTGGAGGAGT
CCCTCAAGGATCCGAATGTGTGCGCCTTCATGGTGGAGCCCATTCAGGGA
GAGGCTGGCGTGGTGGTGCCCAGTGATGGCTATCTGAAGAAGGTGCGAGA
GCTCTGCACCAAGTACAATGTGCTCTGGATTGCCGACGAGGTGCAGACAG
GATTGGCCAGAACTGGAAAGCTGCTGGCCGTGGACTACGAGCAGGTGCAG
CCAGACATTCTGATCCTGGGAAAAGCACTGTCCGGAGGAATGTATCCCGT
GTCGGCGGTTCTCTGCAA
BS06883.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8782-PA | 1296 | Oat-RA | 1..902 | 17..918 | 4510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:25:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oat-RA | 1501 | CG8782-RA | 90..993 | 15..918 | 4520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:24:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19647844..19648426 | 918..336 | 2915 | 100 | Minus |
3L | 28110227 | 3L | 19649441..19649762 | 336..15 | 1610 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:25:00 has no hits.
BS06883.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:55:11 Download gff for
BS06883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oat-PA | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:39:04 Download gff for
BS06883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8782-PA | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:50:11 Download gff for
BS06883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oat-RA | 82..991 | 6..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:36:24 Download gff for
BS06883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oat-RA | 82..991 | 6..916 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:36:24 Download gff for
BS06883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19647846..19648425 | 337..916 | 100 | <- | Minus |
3L | 19649441..19649770 | 6..336 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:50:11 Download gff for
BS06883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19640946..19641525 | 337..916 | 100 | <- | Minus |
arm_3L | 19642541..19642870 | 6..336 | 99 | | Minus |
BS06883.complete Sequence
1328 bp (1328 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635656
> BS06883.complete
GAAGTTATCAGTCGACATGTTCGCCAAGCTATCAGCCCGCGGGATCGCCA
CCCGCATGAGCTTCTTGGCACAGAAGACAGCTTCCCAGGAGACGACGGCC
GCCGCCGGATCCCGTTCCGAACTCGTCTATGCCAGGGAGAACAAGTACGG
CGCCCACAACTACCACCCACTGCCCGTGGCCCTGACCAAGGGCGAGGGCG
TGTTTGTCTGGGATGTGGAGGGCAAGCGCTACTTCGACTATCTGAGCGCC
TACTCGGCGGTCAACCAGGGTCACTGCCATCCCAAGATCGTAGCGGCACT
CACAGCACAGGCCTCCAAGTTGGCCTTGACATCGCGTGCCTTCTATTCGG
ATGTCCTTGGAGAGTACGAGGAGTACGTGACCAAGCTCTTTGGCTTCGAC
AAGGTGCTGCCCATGAACACGGGCGTTGAGGGCGGAGAAACCGCCTGCAA
GTTGGCCCGCAAGTGGGGCTACCTGGAGAAGAAGATACCTGCCAACCAGG
CAAAGATCATCTTCGCGCGCAACAACTTCTGGGGACGCACCCTGTCGGCG
GTGTCCGCCTCCAATGATCCCAGTAGCTACGAGGGATTCGGACCCTTCAT
GCCCGGATTCGAGCTGATCGAGTACGACAATGTGTCAGCGCTGGAGGAGT
CCCTCAAGGATCCGAATGTGTGCGCCTTCATGGTGGAGCCCATTCAGGGA
GAGGCTGGCGTGGTGGTGCCCAGTGATGGCTATCTGAAGAAGGTGCGAGA
GCTCTGCACCAAGTACAATGTGCTCTGGATTGCCGACGAGGTGCAGACAG
GATTGGCCAGAACTGGAAAGCTGCTGGCCGTGGACTACGAGCAGGTGCAG
CCAGACATTCTGATCCTGGGAAAAGCACTGTCCGGAGGAATGTATCCCGT
GTCGGCGGTTCTCTGCAACGACCAGGTGATGCTGTGCATCAAGCCGGGCG
AGCACGGATCCACCTACGGAGGCAACCCCCTGGGCTGCCGAGTGGCCATG
GCCGCCTTGGAGGTTCTGCAGGAGGAGAAGCTGGCGGAGAACGCCTTCAA
AATGGGTGACCTGCTGCGCAACGAGCTGTCCACGCTGCCCAAGGATGTGG
TGTCGGTGGTGCGCGGAAAGGGTCTGCTCAACGCCATCGTTATTAACCAG
AAGTTCGATGCCTGGGAGGTGTGCCTCAGGCTAAAGGAGAACGGACTCCT
GGCCAAGCCCACCCATGGCGACATTATTCGCTTCGCTCCTCCACTGGTCA
TCAATGAGACCCAAATGCGCGAGAGCATCGACATAATCAGGAAAACCATT
CTGTCCATGTAGAAGCTTTCTAGACCAT
BS06883.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:56:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oat-RA | 1296 | CG8782-PA | 1..1296 | 17..1312 | 6480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:56:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oat-RA | 1501 | CG8782-RA | 90..1388 | 15..1313 | 6495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:56:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19647611..19648426 | 1151..336 | 4080 | 100 | Minus |
3L | 28110227 | 3L | 19649441..19649762 | 336..15 | 1610 | 100 | Minus |
3L | 28110227 | 3L | 19647393..19647554 | 1313..1152 | 810 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:56:50 has no hits.
BS06883.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:53 Download gff for
BS06883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oat-RA | 1..1296 | 17..1312 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:32 Download gff for
BS06883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oat-RA | 80..1389 | 6..1319 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:00 Download gff for
BS06883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oat-RA | 97..1387 | 22..1312 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:53 Download gff for
BS06883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oat-RA | 80..1389 | 6..1319 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:40 Download gff for
BS06883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oat-RA | 97..1387 | 22..1312 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:40 Download gff for
BS06883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19647394..19647554 | 1152..1312 | 100 | <- | Minus |
3L | 19647611..19648425 | 337..1151 | 100 | <- | Minus |
3L | 19649441..19649755 | 22..336 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:00 Download gff for
BS06883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19640494..19640654 | 1152..1312 | 100 | <- | Minus |
arm_3L | 19640711..19641525 | 337..1151 | 100 | <- | Minus |
arm_3L | 19642541..19642855 | 22..336 | 100 | | Minus |
BS06883.pep Sequence
Translation from 16 to 1311
> BS06883.pep
MFAKLSARGIATRMSFLAQKTASQETTAAAGSRSELVYARENKYGAHNYH
PLPVALTKGEGVFVWDVEGKRYFDYLSAYSAVNQGHCHPKIVAALTAQAS
KLALTSRAFYSDVLGEYEEYVTKLFGFDKVLPMNTGVEGGETACKLARKW
GYLEKKIPANQAKIIFARNNFWGRTLSAVSASNDPSSYEGFGPFMPGFEL
IEYDNVSALEESLKDPNVCAFMVEPIQGEAGVVVPSDGYLKKVRELCTKY
NVLWIADEVQTGLARTGKLLAVDYEQVQPDILILGKALSGGMYPVSAVLC
NDQVMLCIKPGEHGSTYGGNPLGCRVAMAALEVLQEEKLAENAFKMGDLL
RNELSTLPKDVVSVVRGKGLLNAIVINQKFDAWEVCLRLKENGLLAKPTH
GDIIRFAPPLVINETQMRESIDIIRKTILSM*
BS06883.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oat-PA | 431 | CG8782-PA | 1..431 | 1..431 | 2226 | 100 | Plus |
CG11241-PA | 508 | CG11241-PA | 80..500 | 53..428 | 372 | 28 | Plus |
CG11241-PC | 518 | CG11241-PC | 80..484 | 53..412 | 355 | 28.4 | Plus |
CG11241-PB | 518 | CG11241-PB | 80..484 | 53..412 | 355 | 28.4 | Plus |
CG8745-PA | 494 | CG8745-PA | 37..438 | 49..419 | 297 | 25.6 | Plus |