Clone BS06884 Report

Search the DGRC for BS06884

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:68
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptCG9865-RA
Protein status:BS06884.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06884.3prime Sequence

880 bp (741 high quality bases) assembled on 2005-12-04

> BS06884.3prime
ATGGTCTAGAAAGCTTTTACAGTAACTTTCTGTAGCTTATCTTAAATTGT
GTGAACCCGTAATGACTCAACAGCTGCTCCAAAATGTATCCGTTGGTGGC
GAAGAATACGGCTCCTTGCAGTCCAATCCAGTAGAAGGTGTTCCATGTGT
GGAACTCCAGCAAATAGGCCGGCAGCAACCACAGCGCCTGGGCAAGCAGC
CAGAGGAACAGGAGACCGAAGCACCTTCTCCACGACAGCATCTTGAAGTT
GTTCAAACAGAGCGGCAGAATGGCCAAGTACCAAATGAAGTACTGAGAGG
TTACCACCGAGTTATAGGTGACGATGACAAAGGCCACGGCAAAGATGCAG
AATGGCAGCGTCTGGCGGAACTGACCGAAGCTCAAGCTTAAGTAGAGGAT
GAGCAGGAACTGCGGAGCCAGCACTAGAGTCTTCAGGATCGCAGAAGGTT
CCGCCACACTCGACGCACTGCCCAGGTACTGTAGAAGGAACTGCAGCGAG
AAGTTGTGTCGCGGGTCCTTGCGTACGAAGTGGTACAGGTACGCTTCATA
TATATATTCCCAACCGTACATTGTGTAGAAGGTCCAAGTGAAGGCCACTA
GGCTGATCAATGTTCCACTTATCAGGCACAGTTGTTGCTTGTTGGGCCGC
AGGATTTGGCACAGGAAGTCGAGGGGAGTTTGTGTCAGCCGCGTTGATAG
CGATAAATAGTATGCCAAACTGAATAGCAACGGATACAGACGGAGGTGTA
TCACTAGACCGTGAGCCAAGCCCGCTCCGAATATAAGCCAGTAACTCCTG
GTGACATTGTGCTCAGATTTTACAGCAGGTATATAGTTAGTATCACGAAG
AAGCTTGAGAAAGCATCGCCGCTTCCACGT

BS06884.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG9865-PA 1401 CG9865-RA 596..1401 822..17 4030 100 Minus
CG9865-PB 1401 CG9865-RB 596..1401 822..17 4030 100 Minus
CG9865-PA 1401 CG9865-RA 556..595 861..822 200 100 Minus
CG9865-PB 1401 CG9865-RB 556..595 861..822 200 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:01:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG42381-RA 2259 CG42381-RA 1348..2212 880..17 4255 99.7 Minus
CG42380-RB 2320 CG42380-RB 1409..2273 880..17 4255 99.7 Minus
CG42380-RA 2259 CG42380-RA 1348..2212 880..17 4255 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:01:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21667588..21668452 17..880 4230 99.5 Plus
Blast to na_te.dros performed on 2015-02-09 01:01:39 has no hits.

BS06884.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:55:12 Download gff for BS06884.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9865-PA 537..1401 17..880 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:39:05 Download gff for BS06884.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9865-PB 537..1401 17..880 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:50:41 Download gff for BS06884.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42380-RA 1348..2212 17..880 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:05:49 Download gff for BS06884.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42380-RA 1348..2212 17..880 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:05:49 Download gff for BS06884.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21667588..21668452 17..880 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:50:41 Download gff for BS06884.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17555093..17555957 17..880 99   Plus

BS06884.5prime Sequence

912 bp (869 high quality bases) assembled on 2005-12-04

> BS06884.5prime
GAAGTTATCAGTCGACATGACTCAAACAAAGGCTGCGACCACTGGATGGC
AGCGACTGGGTCGCCGCATCCTTTACACTAGCTTTCGGACCCATCTACTA
ATATCCGCCCTGCTGCGAATAGCTTTAATTTGCTACGGACAATTACACGA
CAGTCAGTCCGCCGTGCCCTACACCGATATAGACTACAAGGTGGTGACTG
ATGGAGCCCGTCAAGTTCTGGCTGGGGACACACCCTTCGCCAGGCATACT
TACCGATATAGCCCAATCATGGCATATCTGCAGACTTTTAACATCCTGCT
TCATCCGGCGTGGGGTAAACTACTGTATGCGACATTCGATCTTCTCATCG
CCACACTTATTTACCGTCTGGTGCACATGGAAATCAAGAGTCAGTACCAG
AAGACCGTACAACACCTGCTTAGCAAGTTCAACAGGCCACGGGACTCGGA
CCAATCGCTGGATGCCCTGGATGAGCGAAGTCATCCAGAGAACTTGGCCC
GCGCCTCTGCTTGCTTTTGGTTATACAACCCGCTGACGGCTGTAATATCC
ACACGTGGAAGCGGCGATTGCTTCTCAAGCTTCTTCGTGATACTAACTAT
ATACCTGCTGTTAAAATCTGAGCACAATGTCACCAGGAGTTACTGGCTTA
TATTCGGAGCGGGCTTGGCTCACGGTCTAGTGATACACCTCCGTCTGTAT
CCGTTGCTATTCAGTTTGGCATACTATTTATCGCTATCAACGCGGCTGAC
ACAAACTCCCCTCGACTTCCTGTGCCAAATCCTGCGGCCCAACAAGCAAC
AACTGTGCCTGATAAGTGGAACATTGATCAGCCTAGTGGCCTTCACTTGG
ACCTTCTACACAATGTACGGTTGGGGATATATATATGAAGCGTACCTGTA
CCACTTCGTACG

BS06884.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG9865-PA 1401 CG9865-RA 1..896 17..912 4455 99.8 Plus
CG9865-PB 1401 CG9865-RB 1..896 17..912 4455 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG42381-RA 2259 CG42381-RA 812..1707 17..912 4465 99.9 Plus
CG42380-RB 2320 CG42380-RB 873..1768 17..912 4465 99.9 Plus
CG42380-RA 2259 CG42380-RA 812..1707 17..912 4465 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:26:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21668093..21668988 912..17 4465 99.9 Minus
Blast to na_te.dros performed on 2015-02-13 08:26:42 has no hits.

BS06884.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:55:13 Download gff for BS06884.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9865-PA 1..896 17..912 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:39:06 Download gff for BS06884.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9865-PB 1..896 17..912 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:15:10 Download gff for BS06884.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42380-RA 808..1707 9..912 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:31:22 Download gff for BS06884.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42380-RA 808..1707 9..912 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:31:22 Download gff for BS06884.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21668093..21668992 9..912 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:15:10 Download gff for BS06884.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17555598..17556497 9..912 99   Minus

BS06884.complete Sequence

1433 bp (1433 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635657

> BS06884.complete
GAAGTTATCAGTCGACATGACTCAAACAAAGGCTGCGACCACTGGATGGC
AGCGACTGGGTCGCCGCATCCTTTACACTAGCTTTCGGACCCATCTACTA
ATATCCGCCCTGCTGCGAATAGCTTTAATTTGCTACGGACAATTACACGA
CAGTCAGTCCGCCGTGCCCTACACCGATATAGACTACAAGGTGGTGACTG
ATGGAGCCCGTCAAGTTCTGGCTGGGGACACACCCTTCGCCAGGCATACT
TACCGATATAGCCCAATCATGGCATATCTGCAGACTTTTAACATCCTGCT
TCATCCGGCGTGGGGTAAACTACTGTATGCGACATTCGATCTTCTCATCG
CCACACTTATTTACCGTCTGGTGCACATGGAAATCAAGAGTCAGTACCAG
AAGACCGTACAACACCTGCTTAGCAAGTTCAACAGGCCACGGGACTCGGA
CCAATCGCTGGATGCCCTGGATGAGCGAAGTCATCCAGAGAACTTGGCCC
GCGCCTCTGCTTGCTTTTGGTTATACAACCCGCTGACGGCTGTAATATCC
ACACGTGGAAGCGGCGATTGCTTCTCAAGCTTCTTCGTGATACTAACTAT
ATACCTGCTGTTAAAATCTGAGCACAATGTCACCAGGAGTTACTGGCTTA
TATTCGGAGCGGGCTTGGCTCACGGTCTAGTGATACACCTCCGTCTGTAT
CCGTTGCTATTCAGTTTGGCATACTATTTATCGCTATCAACGCGGCTGAC
ACAAACTCCCCTCGACTTCCTGTGCCAAATCCTGCGGCCCAACAAGCAAC
AACTGTGCCTGATAAGTGGAACATTGATCAGCCTAGTGGCCTTCACTTGG
ACCTTCTACACAATGTACGGTTGGGAATATATATATGAAGCGTACCTGTA
CCACTTCGTACGCAAGGACCCGCGACACAACTTCTCGCTGCAGTTCCTTC
TACAGTACCTGGGCAGTGCGTCGAGTGTGGCGGAACCTTCTGCGATCCTG
AAGACTCTAGTGCTGGCTCCGCAGTTCCTGCTCATCCTCTACTTAAGCTT
GAGCTTCGGTCAGTTCCGCCAGACGCTGCCATTCTGCATCTTTGCCGTGG
CCTTTGTCATCGTCACCTATAACTCGGTGGTAACCTCTCAGTACTTCATT
TGGTACTTGGCCATTCTGCCGCTCTGTTTGAACAACTTCAAGATGCTGTC
GTGGAGAAGGTGCTTCGGTCTCCTGTTCCTCTGGCTGCTTGCCCAGGCGC
TGTGGTTGCTGCCGGCCTATTTGCTGGAGTTCCACACATGGAACACCTTC
TACTGGATTGGACTGCAAGGAGCCGTATTCTTCGCCACCAACGGATACAT
TTTGGAGCAGCTGTTGAGTCATTACGGGTTCACACAATTTAAGATAAGCT
ACAGAAAGTTACTGTAAAAGCTTTCTAGACCAT

BS06884.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG9865-RB 1401 CG9865-PB 1..1401 17..1417 7005 100 Plus
CG9865-RA 1401 CG9865-PA 1..1401 17..1417 7005 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG42381-RA 2259 CG42381-RA 812..2212 17..1417 7005 100 Plus
CG42380-RB 2320 CG42380-RB 873..2273 17..1417 7005 100 Plus
CG42380-RA 2259 CG42380-RA 812..2212 17..1417 7005 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21667588..21668988 1417..17 7005 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:13:18 has no hits.

BS06884.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:55 Download gff for BS06884.complete
Subject Subject Range Query Range Percent Splice Strand
CG9865-RB 1..1401 17..1417 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:34 Download gff for BS06884.complete
Subject Subject Range Query Range Percent Splice Strand
CG42379-RA 947..2351 9..1417 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:17 Download gff for BS06884.complete
Subject Subject Range Query Range Percent Splice Strand
CG42380-RA 812..2210 17..1415 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:55 Download gff for BS06884.complete
Subject Subject Range Query Range Percent Splice Strand
CG9865-RB 868..2272 9..1417 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:35 Download gff for BS06884.complete
Subject Subject Range Query Range Percent Splice Strand
CG42380-RA 812..2210 17..1415 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:35 Download gff for BS06884.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21667590..21668988 17..1415 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:17 Download gff for BS06884.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17555095..17556493 17..1415 100   Minus

BS06884.pep Sequence

Translation from 16 to 1416

> BS06884.pep
MTQTKAATTGWQRLGRRILYTSFRTHLLISALLRIALICYGQLHDSQSAV
PYTDIDYKVVTDGARQVLAGDTPFARHTYRYSPIMAYLQTFNILLHPAWG
KLLYATFDLLIATLIYRLVHMEIKSQYQKTVQHLLSKFNRPRDSDQSLDA
LDERSHPENLARASACFWLYNPLTAVISTRGSGDCFSSFFVILTIYLLLK
SEHNVTRSYWLIFGAGLAHGLVIHLRLYPLLFSLAYYLSLSTRLTQTPLD
FLCQILRPNKQQLCLISGTLISLVAFTWTFYTMYGWEYIYEAYLYHFVRK
DPRHNFSLQFLLQYLGSASSVAEPSAILKTLVLAPQFLLILYLSLSFGQF
RQTLPFCIFAVAFVIVTYNSVVTSQYFIWYLAILPLCLNNFKMLSWRRCF
GLLFLWLLAQALWLLPAYLLEFHTWNTFYWIGLQGAVFFATNGYILEQLL
SHYGFTQFKISYRKLL*

BS06884.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG9865-PB 466 CG9865-PB 1..466 1..466 2452 100 Plus
CG9865-PA 466 CG9865-PA 1..466 1..466 2452 100 Plus