Clone Sequence Records
BS06884.3prime Sequence
880 bp (741 high quality bases) assembled on 2005-12-04
> BS06884.3prime
ATGGTCTAGAAAGCTTTTACAGTAACTTTCTGTAGCTTATCTTAAATTGT
GTGAACCCGTAATGACTCAACAGCTGCTCCAAAATGTATCCGTTGGTGGC
GAAGAATACGGCTCCTTGCAGTCCAATCCAGTAGAAGGTGTTCCATGTGT
GGAACTCCAGCAAATAGGCCGGCAGCAACCACAGCGCCTGGGCAAGCAGC
CAGAGGAACAGGAGACCGAAGCACCTTCTCCACGACAGCATCTTGAAGTT
GTTCAAACAGAGCGGCAGAATGGCCAAGTACCAAATGAAGTACTGAGAGG
TTACCACCGAGTTATAGGTGACGATGACAAAGGCCACGGCAAAGATGCAG
AATGGCAGCGTCTGGCGGAACTGACCGAAGCTCAAGCTTAAGTAGAGGAT
GAGCAGGAACTGCGGAGCCAGCACTAGAGTCTTCAGGATCGCAGAAGGTT
CCGCCACACTCGACGCACTGCCCAGGTACTGTAGAAGGAACTGCAGCGAG
AAGTTGTGTCGCGGGTCCTTGCGTACGAAGTGGTACAGGTACGCTTCATA
TATATATTCCCAACCGTACATTGTGTAGAAGGTCCAAGTGAAGGCCACTA
GGCTGATCAATGTTCCACTTATCAGGCACAGTTGTTGCTTGTTGGGCCGC
AGGATTTGGCACAGGAAGTCGAGGGGAGTTTGTGTCAGCCGCGTTGATAG
CGATAAATAGTATGCCAAACTGAATAGCAACGGATACAGACGGAGGTGTA
TCACTAGACCGTGAGCCAAGCCCGCTCCGAATATAAGCCAGTAACTCCTG
GTGACATTGTGCTCAGATTTTACAGCAGGTATATAGTTAGTATCACGAAG
AAGCTTGAGAAAGCATCGCCGCTTCCACGT
BS06884.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9865-PA | 1401 | CG9865-RA | 596..1401 | 822..17 | 4030 | 100 | Minus |
CG9865-PB | 1401 | CG9865-RB | 596..1401 | 822..17 | 4030 | 100 | Minus |
CG9865-PA | 1401 | CG9865-RA | 556..595 | 861..822 | 200 | 100 | Minus |
CG9865-PB | 1401 | CG9865-RB | 556..595 | 861..822 | 200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:01:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42381-RA | 2259 | CG42381-RA | 1348..2212 | 880..17 | 4255 | 99.7 | Minus |
CG42380-RB | 2320 | CG42380-RB | 1409..2273 | 880..17 | 4255 | 99.7 | Minus |
CG42380-RA | 2259 | CG42380-RA | 1348..2212 | 880..17 | 4255 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:01:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21667588..21668452 | 17..880 | 4230 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-09 01:01:39 has no hits.
BS06884.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:55:12 Download gff for
BS06884.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9865-PA | 537..1401 | 17..880 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:39:05 Download gff for
BS06884.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9865-PB | 537..1401 | 17..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:50:41 Download gff for
BS06884.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42380-RA | 1348..2212 | 17..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:05:49 Download gff for
BS06884.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42380-RA | 1348..2212 | 17..880 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:05:49 Download gff for
BS06884.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21667588..21668452 | 17..880 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:50:41 Download gff for
BS06884.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17555093..17555957 | 17..880 | 99 | | Plus |
BS06884.5prime Sequence
912 bp (869 high quality bases) assembled on 2005-12-04
> BS06884.5prime
GAAGTTATCAGTCGACATGACTCAAACAAAGGCTGCGACCACTGGATGGC
AGCGACTGGGTCGCCGCATCCTTTACACTAGCTTTCGGACCCATCTACTA
ATATCCGCCCTGCTGCGAATAGCTTTAATTTGCTACGGACAATTACACGA
CAGTCAGTCCGCCGTGCCCTACACCGATATAGACTACAAGGTGGTGACTG
ATGGAGCCCGTCAAGTTCTGGCTGGGGACACACCCTTCGCCAGGCATACT
TACCGATATAGCCCAATCATGGCATATCTGCAGACTTTTAACATCCTGCT
TCATCCGGCGTGGGGTAAACTACTGTATGCGACATTCGATCTTCTCATCG
CCACACTTATTTACCGTCTGGTGCACATGGAAATCAAGAGTCAGTACCAG
AAGACCGTACAACACCTGCTTAGCAAGTTCAACAGGCCACGGGACTCGGA
CCAATCGCTGGATGCCCTGGATGAGCGAAGTCATCCAGAGAACTTGGCCC
GCGCCTCTGCTTGCTTTTGGTTATACAACCCGCTGACGGCTGTAATATCC
ACACGTGGAAGCGGCGATTGCTTCTCAAGCTTCTTCGTGATACTAACTAT
ATACCTGCTGTTAAAATCTGAGCACAATGTCACCAGGAGTTACTGGCTTA
TATTCGGAGCGGGCTTGGCTCACGGTCTAGTGATACACCTCCGTCTGTAT
CCGTTGCTATTCAGTTTGGCATACTATTTATCGCTATCAACGCGGCTGAC
ACAAACTCCCCTCGACTTCCTGTGCCAAATCCTGCGGCCCAACAAGCAAC
AACTGTGCCTGATAAGTGGAACATTGATCAGCCTAGTGGCCTTCACTTGG
ACCTTCTACACAATGTACGGTTGGGGATATATATATGAAGCGTACCTGTA
CCACTTCGTACG
BS06884.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9865-PA | 1401 | CG9865-RA | 1..896 | 17..912 | 4455 | 99.8 | Plus |
CG9865-PB | 1401 | CG9865-RB | 1..896 | 17..912 | 4455 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:26:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42381-RA | 2259 | CG42381-RA | 812..1707 | 17..912 | 4465 | 99.9 | Plus |
CG42380-RB | 2320 | CG42380-RB | 873..1768 | 17..912 | 4465 | 99.9 | Plus |
CG42380-RA | 2259 | CG42380-RA | 812..1707 | 17..912 | 4465 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:26:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21668093..21668988 | 912..17 | 4465 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:26:42 has no hits.
BS06884.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:55:13 Download gff for
BS06884.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9865-PA | 1..896 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:39:06 Download gff for
BS06884.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9865-PB | 1..896 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:15:10 Download gff for
BS06884.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42380-RA | 808..1707 | 9..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:31:22 Download gff for
BS06884.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42380-RA | 808..1707 | 9..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:31:22 Download gff for
BS06884.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21668093..21668992 | 9..912 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:15:10 Download gff for
BS06884.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17555598..17556497 | 9..912 | 99 | | Minus |
BS06884.complete Sequence
1433 bp (1433 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635657
> BS06884.complete
GAAGTTATCAGTCGACATGACTCAAACAAAGGCTGCGACCACTGGATGGC
AGCGACTGGGTCGCCGCATCCTTTACACTAGCTTTCGGACCCATCTACTA
ATATCCGCCCTGCTGCGAATAGCTTTAATTTGCTACGGACAATTACACGA
CAGTCAGTCCGCCGTGCCCTACACCGATATAGACTACAAGGTGGTGACTG
ATGGAGCCCGTCAAGTTCTGGCTGGGGACACACCCTTCGCCAGGCATACT
TACCGATATAGCCCAATCATGGCATATCTGCAGACTTTTAACATCCTGCT
TCATCCGGCGTGGGGTAAACTACTGTATGCGACATTCGATCTTCTCATCG
CCACACTTATTTACCGTCTGGTGCACATGGAAATCAAGAGTCAGTACCAG
AAGACCGTACAACACCTGCTTAGCAAGTTCAACAGGCCACGGGACTCGGA
CCAATCGCTGGATGCCCTGGATGAGCGAAGTCATCCAGAGAACTTGGCCC
GCGCCTCTGCTTGCTTTTGGTTATACAACCCGCTGACGGCTGTAATATCC
ACACGTGGAAGCGGCGATTGCTTCTCAAGCTTCTTCGTGATACTAACTAT
ATACCTGCTGTTAAAATCTGAGCACAATGTCACCAGGAGTTACTGGCTTA
TATTCGGAGCGGGCTTGGCTCACGGTCTAGTGATACACCTCCGTCTGTAT
CCGTTGCTATTCAGTTTGGCATACTATTTATCGCTATCAACGCGGCTGAC
ACAAACTCCCCTCGACTTCCTGTGCCAAATCCTGCGGCCCAACAAGCAAC
AACTGTGCCTGATAAGTGGAACATTGATCAGCCTAGTGGCCTTCACTTGG
ACCTTCTACACAATGTACGGTTGGGAATATATATATGAAGCGTACCTGTA
CCACTTCGTACGCAAGGACCCGCGACACAACTTCTCGCTGCAGTTCCTTC
TACAGTACCTGGGCAGTGCGTCGAGTGTGGCGGAACCTTCTGCGATCCTG
AAGACTCTAGTGCTGGCTCCGCAGTTCCTGCTCATCCTCTACTTAAGCTT
GAGCTTCGGTCAGTTCCGCCAGACGCTGCCATTCTGCATCTTTGCCGTGG
CCTTTGTCATCGTCACCTATAACTCGGTGGTAACCTCTCAGTACTTCATT
TGGTACTTGGCCATTCTGCCGCTCTGTTTGAACAACTTCAAGATGCTGTC
GTGGAGAAGGTGCTTCGGTCTCCTGTTCCTCTGGCTGCTTGCCCAGGCGC
TGTGGTTGCTGCCGGCCTATTTGCTGGAGTTCCACACATGGAACACCTTC
TACTGGATTGGACTGCAAGGAGCCGTATTCTTCGCCACCAACGGATACAT
TTTGGAGCAGCTGTTGAGTCATTACGGGTTCACACAATTTAAGATAAGCT
ACAGAAAGTTACTGTAAAAGCTTTCTAGACCAT
BS06884.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:13:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9865-RB | 1401 | CG9865-PB | 1..1401 | 17..1417 | 7005 | 100 | Plus |
CG9865-RA | 1401 | CG9865-PA | 1..1401 | 17..1417 | 7005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42381-RA | 2259 | CG42381-RA | 812..2212 | 17..1417 | 7005 | 100 | Plus |
CG42380-RB | 2320 | CG42380-RB | 873..2273 | 17..1417 | 7005 | 100 | Plus |
CG42380-RA | 2259 | CG42380-RA | 812..2212 | 17..1417 | 7005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21667588..21668988 | 1417..17 | 7005 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:13:18 has no hits.
BS06884.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:55 Download gff for
BS06884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9865-RB | 1..1401 | 17..1417 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:34 Download gff for
BS06884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42379-RA | 947..2351 | 9..1417 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:17 Download gff for
BS06884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42380-RA | 812..2210 | 17..1415 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:55 Download gff for
BS06884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9865-RB | 868..2272 | 9..1417 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:35 Download gff for
BS06884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42380-RA | 812..2210 | 17..1415 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:35 Download gff for
BS06884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21667590..21668988 | 17..1415 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:17 Download gff for
BS06884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17555095..17556493 | 17..1415 | 100 | | Minus |
BS06884.pep Sequence
Translation from 16 to 1416
> BS06884.pep
MTQTKAATTGWQRLGRRILYTSFRTHLLISALLRIALICYGQLHDSQSAV
PYTDIDYKVVTDGARQVLAGDTPFARHTYRYSPIMAYLQTFNILLHPAWG
KLLYATFDLLIATLIYRLVHMEIKSQYQKTVQHLLSKFNRPRDSDQSLDA
LDERSHPENLARASACFWLYNPLTAVISTRGSGDCFSSFFVILTIYLLLK
SEHNVTRSYWLIFGAGLAHGLVIHLRLYPLLFSLAYYLSLSTRLTQTPLD
FLCQILRPNKQQLCLISGTLISLVAFTWTFYTMYGWEYIYEAYLYHFVRK
DPRHNFSLQFLLQYLGSASSVAEPSAILKTLVLAPQFLLILYLSLSFGQF
RQTLPFCIFAVAFVIVTYNSVVTSQYFIWYLAILPLCLNNFKMLSWRRCF
GLLFLWLLAQALWLLPAYLLEFHTWNTFYWIGLQGAVFFATNGYILEQLL
SHYGFTQFKISYRKLL*
BS06884.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9865-PB | 466 | CG9865-PB | 1..466 | 1..466 | 2452 | 100 | Plus |
CG9865-PA | 466 | CG9865-PA | 1..466 | 1..466 | 2452 | 100 | Plus |