Clone Sequence Records
BS06886.5prime Sequence
897 bp (819 high quality bases) assembled on 2005-12-04
> BS06886.5prime
GAAGTTATCAGTCGACATGAACGCCCTGCTGCGTCACAAGGGACGCAATC
TGCGGACGAGTCACTTGGCCCAGAATGTCTACAAGCGCTTTCTTAAATCG
AACTGTTGCGCATGCAGTTCGGTGAACGTCACAGATGAACCCGCCAAAGA
AGATGAACTACCGCGAAGATCTGCTTCGACCTCGGTGCTGGAGCTAAGCA
GATCGCTTGGCACTTACCGAAGGTTTCAGCCACATGCCAACTATGGATAC
GACTACTCCGGCTATGGATTTAGGCATCTGCATACGAGCCGGACTTTGCT
GGAGACGTCCAGCTCAAAGATCGACGCAACAGTCAAGAAGCTGAAAAACC
AGCAGAAGGAGAAGGTGGAGGAGATCATGAAGGAGGTGGCCAATGGACAG
GCCGCGGCAGTTCGTGCCAGCAGTGCCGCTACCGCCACGGCCTCCTCGGA
GAAGGGTCAAAACGCTAGTGCGACCGCGGGCTCCACGTCGGCGACTGCCT
CAACGACGTCTTTGGCCAAGACCGCAGACAAGTCGGTGGCCAAGCCAAAG
AAACCACTCCGCACACGGATTTGGGATGAGCTGGTGCACTATTACCACGG
CTTTAGGCTGCTCTTCATCGATGTGGCAATTTGCTCTAAGCTCCTTTGGC
GAGTGCTCAACGGCAAGACGCTCACGCGGCGCGAGAACAAGCAGCTTCAG
CGGACCACCTCTGACTTGTTCCGTCTGATCCCCTTTTCGGTGTTCATCAT
CGTGCCCTTCATGGAGCTGCTGCTGCCGTTGTTCATAAAATTCTTCCCCG
GCATGCTGCCCTCCACGTTCCAGACTTCGACCGATCGACAGGAGAAGCTC
CGGCAGTCACTTAGCGTTCGCCTGGAGGTGGCCAAGTTCTTGCAGCA
BS06886.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4589-PA | 3042 | CG4589-RA | 1..881 | 17..897 | 4405 | 100 | Plus |
| CG4589-PB | 3042 | CG4589-RB | 1..881 | 17..897 | 4405 | 100 | Plus |
| CG4589-PC | 3042 | CG4589-RC | 1..881 | 17..897 | 4405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:26:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Letm1-RC | 3753 | CG4589-RC | 389..1270 | 16..897 | 4410 | 100 | Plus |
| Letm1-RB | 3972 | CG4589-RB | 352..1233 | 16..897 | 4410 | 100 | Plus |
| Letm1-RA | 3716 | CG4589-RA | 352..1233 | 16..897 | 4410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:26:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24512364..24513171 | 897..90 | 4040 | 100 | Minus |
| 2R | 25286936 | 2R | 24514536..24514609 | 89..16 | 370 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 09:26:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2341..2408 | 783..716 | 115 | 63.2 | Minus |
BS06886.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:55:15 Download gff for
BS06886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4589-PB | 1..880 | 17..896 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:39:07 Download gff for
BS06886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4589-PC | 1..880 | 17..896 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:10:02 Download gff for
BS06886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Letm1-RA | 346..1232 | 9..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:50:08 Download gff for
BS06886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Letm1-RA | 346..1232 | 9..896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:50:08 Download gff for
BS06886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24512365..24513171 | 90..896 | 100 | <- | Minus |
| 2R | 24514536..24514615 | 9..89 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:10:02 Download gff for
BS06886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20399888..20400694 | 90..896 | 100 | <- | Minus |
| arm_2R | 20402059..20402138 | 9..89 | 96 | | Minus |
BS06886.complete Sequence
3074 bp assembled on 2008-08-14
GenBank Submission: FJ635658
> BS06886.complete
GAAGTTATCAGTCGACATGAACGCCCTGCTGCGTCACAAGGGACGCAATC
TGCGGACGAGTCACTTGGCCCAGAATGTCTACAAGCGCTTTCTTAAATCG
AACTGTTGCGCATGCAGTTCGGTGAACGTCACAGATGAACCCGCCAAAGA
AGATGAACTACCGCGAAGATCTGCTTCGACCTCGGTGCTGGAGCTAAGCA
GATCGCTTGGCACTTACCGAAGGTTTCAGCCACATGCCAACTATGGATAC
GACTACTCCGGCTATGGATTTAGGCATCTGCATACGAGCCGGACTTTGCT
GGAGACGTCCAGCTCAAAGATCGACGCAACAGTCAAGAAGCTGAAAAACC
AGCAGAAGGAGAAGGTGGAGGAGATCATGAAGGAGGTGGCCAATGGACAG
GCCGCGGCAGTTCGTGCCAGCAGTGCCGCTACCGCCACGGCCTCCTCGGA
GAAGGGTCAAAACGCTAGTGCGACCGCGGGCTCCACGTCGGCGACTGCCT
CAACGACGTCTTTGGCCAAGACCGCAGACAAGTCGGTGGCCAAGCCAAAG
AAACCACTCCGCACACGGATTTGGGATGAGCTGGTGCACTATTACCACGG
CTTTAGGCTGCTCTTCATCGATGTGGCAATTTGCTCTAAGCTCCTTTGGC
GAGTGCTCAACGGCAAGACGCTCACGCGGCGCGAGAACAAGCAGCTTCAG
CGGACCACCTCTGACTTGTTCCGTCTGATCCCCTTTTCGGTGTTCATCAT
CGTGCCCTTCATGGAGCTGCTGCTGCCGTTGTTCATAAAATTCTTCCCCG
GCATGCTGCCCTCCACGTTCCAGACTTCGACCGATCGACAGGAGAAGCTC
CGGCAGTCACTTAGCGTTCGCCTGGAGGTGGCCAAGTTCTTGCAGCAGAC
CCTAGATCAGATGCCCGTCCAGCACAAGGAACACAGCAGCGAAGAGGCCA
AGCAGTTCGAGGCCTTTTTCACTAAAATCCGGAATCCCACTGAACCAGTG
AGCAACGATGAAATCATCAAATTCGCCAAGCGATTCGACGATGAGATCAC
CTTAGATTCACTGTCCCGGGAGCAATTGGCGGCTCTTTGTCGCGTCCTTG
AACTGAACACAATTGGCACCACCACGCTGCTGCGGTTCCAGCTGCGTCTG
AAGCTGAGATCTTTGGCCACCGATGACCGCGTTATTGCCCGCGAAGGAGT
CGACTCCCTGGACCTTCTAGAGCTGCAACAGGCGTGCAAGGCACGTGGAA
TGCGGGCATATGGCCTAACGGAGGAGCGTCTTCGTTTTCAGCTTAAGGAG
TGGATAGATCTCTCCCTGAACGAACAGGTACCGCCTACGCTGCTGCTCCT
GTCAAGAACCATGCTTATTTCCGACGACAGCATCACCACCGATAAGCTCA
AGGAGACGATTCGTGTGCTACCGGATGCAGTGGGTGCCCACACACGGCAC
GCTATCGGGGAGAGTGAGGGCAAGGTGGACAACAAGACGAAGATCGAAAT
CATCAAGGAGGAGGAGCGCAAGATTCGCGAAGAGCGCGAGGAAGAGCGGG
AAGAGACCATCGCAAAACGATCGGCCATCAAGGAGGAGATTCCCGCTCCT
TATGTATTTGCTGAGAAGTTGTCGGGTTCCCAGGATCTTCTGGATCACAA
GGAACAGTCCTCGGTGTCCGAGACGGACAAGGGCATTTCCTCTACCGATG
TACAGCTGCTGTCTGAGGCCCTAAAGACACTCTCATCTGATAAACAGCTC
GTGGTGGAAAAGGAAACAATCAAGGAACTCAAGGAGGAATTGGCCGACTA
TAAGGAGGATGTGGAGGAGCTACGCGAGGTGCGACAGGTAGTCAAGGAGC
CTGTGCGCGAAAGCCGGGCGGCCAAGTTGCTCTACAATCGGGTCAACAAG
ATGATTTCCCAACTCGATAATGTGCTTAACGACCTAGAGGCCAGGCAGCA
TCAAATCAAGCAGGCGGAATCCTCTGATTACGCGGCGTCCAGTCCCACTG
TGGAACCACAGCAAATGGTGCACATTGACGAGCTGGTCGCCACCATCCGG
CGAATGAAGGAGGCATCCGATGAAGAGCGATTCAAGGTTGTCGGGGATCT
GCTGGTCAAACTCGACGCGGACAAAGACGGTGTGATTTCGGTGAACGAGA
TCACCAAGGCGGTGCAGAGCATCGACCGCGAGGCCACGAATATCGACAAG
AAGCAGCTGGAGGAGTTTACCGAGCTACTTTCCAAGTTGGCGTCCCGGCG
ACGACACGAGGAGATCGTGCACATCGACGATTTAATGAATAACATCAAGG
TGTTGAAGGAAACTAGCGATGAGGCACGACTTAAGCACATCGAAGCTGTA
CTGGAGAAATTTGATGCCGACAAGGATGGCGTGGTGACCGTCAACGATAT
TCGTAAGGTGTTGGAATCCATTGGTCGTGATAACATCAAGCTGAGCGACA
AGGCCATTGAGGAACTCATCAGTCTGCTTGACAAGGAGCAAGTACTGCAG
GCAGAGCAGAAGATTGAGAAGGCCATTGCTAAGAGCATGAAAGAGGCTGA
GAAACTGAAGTCTGAGGTGGACAAAGCGGATAAGGACTTGTCCAAGCTTG
TTAATGATATTCACGATTCCGCCAAGGAGATTCAGGATATTGCCAACGAG
ATGCGTGATAAGGAGGAAACTGTGCCCGATAAAGCGAAGGAGCTAAAAGC
AGAGCCCGCATTCAAGGATACGGCCAAAACATTGAAGGACAACGCAAAGG
ACCTGGACGATTTAGCGAAGGACCCAAAGTCAGACCCCAAATCCCCGACA
AAGGCTTCTACAGGGTCCGGTCCAGCCGGACTGTCAGGTGGAGGCCCCAG
CAGTGGCAGTAGCGGTATTGCCACCGGATCAACGACGGAATCAGCGCTCC
GAGAGGCGGCCGAGCGTCAAATGGAAAAGATCCTGCCCTCCACAGACATT
GGTCTGCCCCCCACGATACAAACACCATCGCAACCACCGACGTCAAAAAA
AGCAACGGCCACTGCGTCGACCCTGTCCACGACGATAACGGCCAAGAAAC
TGCTCTGAAAGCTTTCTAGACCAT
BS06886.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:05:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Letm1-RC | 3042 | CG4589-PC | 1..3042 | 17..3058 | 15210 | 100 | Plus |
| Letm1-RB | 3042 | CG4589-PB | 1..3042 | 17..3058 | 15210 | 100 | Plus |
| Letm1-RA | 3042 | CG4589-PA | 1..3042 | 17..3058 | 15210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:05:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Letm1-RC | 3753 | CG4589-RC | 389..3431 | 16..3058 | 15215 | 100 | Plus |
| Letm1-RB | 3972 | CG4589-RB | 352..3394 | 16..3058 | 15215 | 100 | Plus |
| Letm1-RA | 3716 | CG4589-RA | 352..3394 | 16..3058 | 15215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:05:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24510852..24513171 | 2409..90 | 11600 | 100 | Minus |
| 2R | 25286936 | 2R | 24510086..24510441 | 3058..2703 | 1780 | 100 | Minus |
| 2R | 25286936 | 2R | 24510497..24510795 | 2704..2406 | 1495 | 100 | Minus |
| 2R | 25286936 | 2R | 24514536..24514609 | 89..16 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:05:47 has no hits.
BS06886.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:51:08 Download gff for
BS06886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4589-RC | 343..3391 | 9..3058 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:46:32 Download gff for
BS06886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Letm1-RA | 353..3393 | 17..3057 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:02:08 Download gff for
BS06886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4589-RC | 350..3390 | 17..3057 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:51:02 Download gff for
BS06886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Letm1-RA | 353..3393 | 17..3057 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:51:02 Download gff for
BS06886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24510087..24510439 | 2705..3057 | 100 | <- | Minus |
| 2R | 24510497..24510793 | 2408..2704 | 100 | <- | Minus |
| 2R | 24510854..24513171 | 90..2407 | 100 | <- | Minus |
| 2R | 24514536..24514608 | 17..89 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:46:32 Download gff for
BS06886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20397610..20397962 | 2705..3057 | 100 | <- | Minus |
| arm_2R | 20398020..20398316 | 2408..2704 | 100 | <- | Minus |
| arm_2R | 20398377..20400694 | 90..2407 | 100 | <- | Minus |
| arm_2R | 20402059..20402131 | 17..89 | 100 | | Minus |
BS06886.pep Sequence
Translation from 16 to 3057
> BS06886.pep
MNALLRHKGRNLRTSHLAQNVYKRFLKSNCCACSSVNVTDEPAKEDELPR
RSASTSVLELSRSLGTYRRFQPHANYGYDYSGYGFRHLHTSRTLLETSSS
KIDATVKKLKNQQKEKVEEIMKEVANGQAAAVRASSAATATASSEKGQNA
SATAGSTSATASTTSLAKTADKSVAKPKKPLRTRIWDELVHYYHGFRLLF
IDVAICSKLLWRVLNGKTLTRRENKQLQRTTSDLFRLIPFSVFIIVPFME
LLLPLFIKFFPGMLPSTFQTSTDRQEKLRQSLSVRLEVAKFLQQTLDQMP
VQHKEHSSEEAKQFEAFFTKIRNPTEPVSNDEIIKFAKRFDDEITLDSLS
REQLAALCRVLELNTIGTTTLLRFQLRLKLRSLATDDRVIAREGVDSLDL
LELQQACKARGMRAYGLTEERLRFQLKEWIDLSLNEQVPPTLLLLSRTML
ISDDSITTDKLKETIRVLPDAVGAHTRHAIGESEGKVDNKTKIEIIKEEE
RKIREEREEEREETIAKRSAIKEEIPAPYVFAEKLSGSQDLLDHKEQSSV
SETDKGISSTDVQLLSEALKTLSSDKQLVVEKETIKELKEELADYKEDVE
ELREVRQVVKEPVRESRAAKLLYNRVNKMISQLDNVLNDLEARQHQIKQA
ESSDYAASSPTVEPQQMVHIDELVATIRRMKEASDEERFKVVGDLLVKLD
ADKDGVISVNEITKAVQSIDREATNIDKKQLEEFTELLSKLASRRRHEEI
VHIDDLMNNIKVLKETSDEARLKHIEAVLEKFDADKDGVVTVNDIRKVLE
SIGRDNIKLSDKAIEELISLLDKEQVLQAEQKIEKAIAKSMKEAEKLKSE
VDKADKDLSKLVNDIHDSAKEIQDIANEMRDKEETVPDKAKELKAEPAFK
DTAKTLKDNAKDLDDLAKDPKSDPKSPTKASTGSGPAGLSGGGPSSGSSG
IATGSTTESALREAAERQMEKILPSTDIGLPPTIQTPSQPPTSKKATATA
STLSTTITAKKLL*
BS06886.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:04:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Letm1-PC | 1013 | CG4589-PC | 1..1013 | 1..1013 | 5015 | 100 | Plus |
| Letm1-PB | 1013 | CG4589-PB | 1..1013 | 1..1013 | 5015 | 100 | Plus |
| Letm1-PA | 1013 | CG4589-PA | 1..1013 | 1..1013 | 5015 | 100 | Plus |
| Mhc-PU | 1949 | CG17927-PU | 857..1271 | 492..908 | 169 | 20.6 | Plus |
| Mhc-PN | 1949 | CG17927-PN | 857..1271 | 492..908 | 169 | 20.6 | Plus |
