Clone BS06887 Report

Search the DGRC for BS06887

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:68
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptHug-RA
Protein status:BS06887.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06887.5prime Sequence

606 bp (605 high quality bases) assembled on 2005-12-04

> BS06887.5prime
GAAGTTATCAGTCGACATGTGTGGTCCTAGTTATTGCACACTGCTGCTAA
TCGCGGCTTCCTGCTACATCCTTGTTTGCAGTCATGCGAAGTCCTTGCAG
GGCACGAGCAAACTGGATTTGGGAAATCACATCAGCGCCGGCTCTGCCAG
AGGATCATTATCACCAGCTTCACCAGCGTTGAGCGAGGCACGTCAAAAGC
GCGCCATGGGCGACTACAAAGAGCTGACAGACATCATTGACGAGCTGGAG
GAGAATAGCCTGGCCCAGAAGGCCAGTGCCACCATGCAGGTGGCTGCCAT
GCCGCCGCAGGGCCAGGAATTCGATTTGGACACCATGCCGCCACTGACCT
ATTACCTGCTCCTTCAAAAGCTACGACAGCTGCAGAGTAATGGGGAGCCC
GCTTATCGCGTGCGGACGCCACGCCTTGGCCGCAGCATTGACTCCTGGCG
ACTACTGGACGCGGAGGGGGCGACGGGAATGGCGGGCGGCGAGGAGGCCA
TCGGCGGGCAGTTCATGCAGCGCATGGTTAAGAAATCGGTGCCGTTCAAG
CCACGCCTGGGCAAACGTGCTCAAGTGTGCGGTGGCGATTGAAAGCTTTC
TAGACC

BS06887.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG6371-PA 576 hug-RA 1..576 17..592 2880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:24:31
Subject Length Description Subject Range Query Range Score Percent Strand
Hug-RA 1033 CG6371-RA 169..744 17..592 2880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12527746..12528030 96..380 1425 100 Plus
3R 32079331 3R 12528576..12528787 381..592 1060 100 Plus
3R 32079331 3R 12526356..12526440 17..101 425 100 Plus
Blast to na_te.dros performed on 2015-02-09 22:24:28 has no hits.

BS06887.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:55:17 Download gff for BS06887.5prime
Subject Subject Range Query Range Percent Splice Strand
hug-PA 1..576 17..592 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:39:10 Download gff for BS06887.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6371-PA 1..576 17..592 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:25:06 Download gff for BS06887.5prime
Subject Subject Range Query Range Percent Splice Strand
hug-RA 164..744 9..592 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:44:15 Download gff for BS06887.5prime
Subject Subject Range Query Range Percent Splice Strand
Hug-RA 164..744 9..592 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:44:15 Download gff for BS06887.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12526351..12526439 9..100 95 -> Plus
3R 12527751..12528030 101..380 100 -> Plus
3R 12528576..12528787 381..592 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:25:06 Download gff for BS06887.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8352073..8352161 9..100 95 -> Plus
arm_3R 8353473..8353752 101..380 100 -> Plus
arm_3R 8354298..8354509 381..592 100   Plus

BS06887.3prime Sequence

606 bp (605 high quality bases) assembled on 2005-12-04

> BS06887.3prime
ATGGTCTAGAAAGCTTTCAATCGCCACCGCACACTTGAGCACGTTTGCCC
AGGCGTGGCTTGAACGGCACCGATTTCTTAACCATGCGCTGCATGAACTG
CCCGCCGATGGCCTCCTCGCCGCCCGCCATTCCCGTCGCCCCCTCCGCGT
CCAGTAGTCGCCAGGAGTCAATGCTGCGGCCAAGGCGTGGCGTCCGCACG
CGATAAGCGGGCTCCCCATTACTCTGCAGCTGTCGTAGCTTTTGAAGGAG
CAGGTAATAGGTCAGTGGCGGCATGGTGTCCAAATCGAATTCCTGGCCCT
GCGGCGGCATGGCAGCCACCTGCATGGTGGCACTGGCCTTCTGGGCCAGG
CTATTCTCCTCCAGCTCGTCAATGATGTCTGTCAGCTCTTTGTAGTCGCC
CATGGCGCGCTTTTGACGTGCCTCGCTCAACGCTGGTGAAGCTGGTGATA
ATGATCCTCTGGCAGAGCCGGCGCTGATGTGATTTCCCAAATCCAGTTTG
CTCGTGCCCTGCAAGGACTTCGCATGACTGCAAACAAGGATGTAGCAGGA
AGCCGCGATTAGCAGCAGTGTGCAATAACTAGGACCACACATGTCGACTG
ATAACT

BS06887.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG6371-PA 576 hug-RA 1..576 592..17 2880 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:04:25
Subject Length Description Subject Range Query Range Score Percent Strand
Hug-RA 1033 CG6371-RA 169..744 592..17 2880 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:04:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12527746..12528030 513..229 1425 100 Minus
3R 32079331 3R 12528576..12528787 228..17 1060 100 Minus
3R 32079331 3R 12526356..12526440 592..508 425 100 Minus
Blast to na_te.dros performed on 2015-02-10 19:04:24 has no hits.

BS06887.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:55:16 Download gff for BS06887.3prime
Subject Subject Range Query Range Percent Splice Strand
hug-PA 1..576 17..592 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:39:09 Download gff for BS06887.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6371-PA 1..576 17..592 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:11:52 Download gff for BS06887.3prime
Subject Subject Range Query Range Percent Splice Strand
hug-RA 164..744 17..600 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:25:27 Download gff for BS06887.3prime
Subject Subject Range Query Range Percent Splice Strand
Hug-RA 164..744 17..600 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:25:27 Download gff for BS06887.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12526351..12526439 509..600 95 -> Minus
3R 12527751..12528030 229..508 100 -> Minus
3R 12528576..12528787 17..228 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:11:52 Download gff for BS06887.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8352073..8352161 509..600 95 -> Minus
arm_3R 8353473..8353752 229..508 100 -> Minus
arm_3R 8354298..8354509 17..228 100   Minus

BS06887.complete Sequence

608 bp (608 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635659

> BS06887.complete
GAAGTTATCAGTCGACATGTGTGGTCCTAGTTATTGCACACTGCTGCTAA
TCGCGGCTTCCTGCTACATCCTTGTTTGCAGTCATGCGAAGTCCTTGCAG
GGCACGAGCAAACTGGATTTGGGAAATCACATCAGCGCCGGCTCTGCCAG
AGGATCATTATCACCAGCTTCACCAGCGTTGAGCGAGGCACGTCAAAAGC
GCGCCATGGGCGACTACAAAGAGCTGACAGACATCATTGACGAGCTGGAG
GAGAATAGCCTGGCCCAGAAGGCCAGTGCCACCATGCAGGTGGCTGCCAT
GCCGCCGCAGGGCCAGGAATTCGATTTGGACACCATGCCGCCACTGACCT
ATTACCTGCTCCTTCAAAAGCTACGACAGCTGCAGAGTAATGGGGAGCCC
GCTTATCGCGTGCGGACGCCACGCCTTGGCCGCAGCATTGACTCCTGGCG
ACTACTGGACGCGGAGGGGGCGACGGGAATGGCGGGCGGCGAGGAGGCCA
TCGGCGGGCAGTTCATGCAGCGCATGGTTAAGAAATCGGTGCCGTTCAAG
CCACGCCTGGGCAAACGTGCTCAAGTGTGCGGTGGCGATTGAAAGCTTTC
TAGACCAT

BS06887.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
Hug-RA 576 CG6371-PA 1..576 17..592 2880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
Hug-RA 1033 CG6371-RA 169..744 17..592 2880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12527746..12528030 96..380 1425 100 Plus
3R 32079331 3R 12528576..12528787 381..592 1060 100 Plus
3R 32079331 3R 12526356..12526440 17..101 425 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:02:18 has no hits.

BS06887.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:56 Download gff for BS06887.complete
Subject Subject Range Query Range Percent Splice Strand
hug-RA 1..576 17..592 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:35 Download gff for BS06887.complete
Subject Subject Range Query Range Percent Splice Strand
hug-RA 164..744 9..592 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:52 Download gff for BS06887.complete
Subject Subject Range Query Range Percent Splice Strand
hug-RA 169..743 17..591 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:56 Download gff for BS06887.complete
Subject Subject Range Query Range Percent Splice Strand
hug-RA 164..744 9..592 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:53 Download gff for BS06887.complete
Subject Subject Range Query Range Percent Splice Strand
Hug-RA 169..743 17..591 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:53 Download gff for BS06887.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12526356..12526439 17..100 100 -> Plus
3R 12527751..12528030 101..380 100 -> Plus
3R 12528576..12528786 381..591 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:52 Download gff for BS06887.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8352078..8352161 17..100 100 -> Plus
arm_3R 8353473..8353752 101..380 100 -> Plus
arm_3R 8354298..8354508 381..591 100   Plus

BS06887.pep Sequence

Translation from 16 to 591

> BS06887.pep
MCGPSYCTLLLIAASCYILVCSHAKSLQGTSKLDLGNHISAGSARGSLSP
ASPALSEARQKRAMGDYKELTDIIDELEENSLAQKASATMQVAAMPPQGQ
EFDLDTMPPLTYYLLLQKLRQLQSNGEPAYRVRTPRLGRSIDSWRLLDAE
GATGMAGGEEAIGGQFMQRMVKKSVPFKPRLGKRAQVCGGD*

BS06887.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:49
Subject Length Description Subject Range Query Range Score Percent Strand
Hug-PA 191 CG6371-PA 1..191 1..191 981 100 Plus