Clone Sequence Records
BS06887.5prime Sequence
606 bp (605 high quality bases) assembled on 2005-12-04
> BS06887.5prime
GAAGTTATCAGTCGACATGTGTGGTCCTAGTTATTGCACACTGCTGCTAA
TCGCGGCTTCCTGCTACATCCTTGTTTGCAGTCATGCGAAGTCCTTGCAG
GGCACGAGCAAACTGGATTTGGGAAATCACATCAGCGCCGGCTCTGCCAG
AGGATCATTATCACCAGCTTCACCAGCGTTGAGCGAGGCACGTCAAAAGC
GCGCCATGGGCGACTACAAAGAGCTGACAGACATCATTGACGAGCTGGAG
GAGAATAGCCTGGCCCAGAAGGCCAGTGCCACCATGCAGGTGGCTGCCAT
GCCGCCGCAGGGCCAGGAATTCGATTTGGACACCATGCCGCCACTGACCT
ATTACCTGCTCCTTCAAAAGCTACGACAGCTGCAGAGTAATGGGGAGCCC
GCTTATCGCGTGCGGACGCCACGCCTTGGCCGCAGCATTGACTCCTGGCG
ACTACTGGACGCGGAGGGGGCGACGGGAATGGCGGGCGGCGAGGAGGCCA
TCGGCGGGCAGTTCATGCAGCGCATGGTTAAGAAATCGGTGCCGTTCAAG
CCACGCCTGGGCAAACGTGCTCAAGTGTGCGGTGGCGATTGAAAGCTTTC
TAGACC
BS06887.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6371-PA | 576 | hug-RA | 1..576 | 17..592 | 2880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:24:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hug-RA | 1033 | CG6371-RA | 169..744 | 17..592 | 2880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:24:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12527746..12528030 | 96..380 | 1425 | 100 | Plus |
3R | 32079331 | 3R | 12528576..12528787 | 381..592 | 1060 | 100 | Plus |
3R | 32079331 | 3R | 12526356..12526440 | 17..101 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 22:24:28 has no hits.
BS06887.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:55:17 Download gff for
BS06887.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hug-PA | 1..576 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:39:10 Download gff for
BS06887.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6371-PA | 1..576 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:25:06 Download gff for
BS06887.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hug-RA | 164..744 | 9..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:44:15 Download gff for
BS06887.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hug-RA | 164..744 | 9..592 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:44:15 Download gff for
BS06887.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12526351..12526439 | 9..100 | 95 | -> | Plus |
3R | 12527751..12528030 | 101..380 | 100 | -> | Plus |
3R | 12528576..12528787 | 381..592 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:25:06 Download gff for
BS06887.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8352073..8352161 | 9..100 | 95 | -> | Plus |
arm_3R | 8353473..8353752 | 101..380 | 100 | -> | Plus |
arm_3R | 8354298..8354509 | 381..592 | 100 | | Plus |
BS06887.3prime Sequence
606 bp (605 high quality bases) assembled on 2005-12-04
> BS06887.3prime
ATGGTCTAGAAAGCTTTCAATCGCCACCGCACACTTGAGCACGTTTGCCC
AGGCGTGGCTTGAACGGCACCGATTTCTTAACCATGCGCTGCATGAACTG
CCCGCCGATGGCCTCCTCGCCGCCCGCCATTCCCGTCGCCCCCTCCGCGT
CCAGTAGTCGCCAGGAGTCAATGCTGCGGCCAAGGCGTGGCGTCCGCACG
CGATAAGCGGGCTCCCCATTACTCTGCAGCTGTCGTAGCTTTTGAAGGAG
CAGGTAATAGGTCAGTGGCGGCATGGTGTCCAAATCGAATTCCTGGCCCT
GCGGCGGCATGGCAGCCACCTGCATGGTGGCACTGGCCTTCTGGGCCAGG
CTATTCTCCTCCAGCTCGTCAATGATGTCTGTCAGCTCTTTGTAGTCGCC
CATGGCGCGCTTTTGACGTGCCTCGCTCAACGCTGGTGAAGCTGGTGATA
ATGATCCTCTGGCAGAGCCGGCGCTGATGTGATTTCCCAAATCCAGTTTG
CTCGTGCCCTGCAAGGACTTCGCATGACTGCAAACAAGGATGTAGCAGGA
AGCCGCGATTAGCAGCAGTGTGCAATAACTAGGACCACACATGTCGACTG
ATAACT
BS06887.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6371-PA | 576 | hug-RA | 1..576 | 592..17 | 2880 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:04:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hug-RA | 1033 | CG6371-RA | 169..744 | 592..17 | 2880 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:04:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12527746..12528030 | 513..229 | 1425 | 100 | Minus |
3R | 32079331 | 3R | 12528576..12528787 | 228..17 | 1060 | 100 | Minus |
3R | 32079331 | 3R | 12526356..12526440 | 592..508 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:04:24 has no hits.
BS06887.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:55:16 Download gff for
BS06887.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hug-PA | 1..576 | 17..592 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:39:09 Download gff for
BS06887.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6371-PA | 1..576 | 17..592 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:11:52 Download gff for
BS06887.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hug-RA | 164..744 | 17..600 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:25:27 Download gff for
BS06887.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hug-RA | 164..744 | 17..600 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:25:27 Download gff for
BS06887.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12526351..12526439 | 509..600 | 95 | -> | Minus |
3R | 12527751..12528030 | 229..508 | 100 | -> | Minus |
3R | 12528576..12528787 | 17..228 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:11:52 Download gff for
BS06887.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8352073..8352161 | 509..600 | 95 | -> | Minus |
arm_3R | 8353473..8353752 | 229..508 | 100 | -> | Minus |
arm_3R | 8354298..8354509 | 17..228 | 100 | | Minus |
BS06887.complete Sequence
608 bp (608 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635659
> BS06887.complete
GAAGTTATCAGTCGACATGTGTGGTCCTAGTTATTGCACACTGCTGCTAA
TCGCGGCTTCCTGCTACATCCTTGTTTGCAGTCATGCGAAGTCCTTGCAG
GGCACGAGCAAACTGGATTTGGGAAATCACATCAGCGCCGGCTCTGCCAG
AGGATCATTATCACCAGCTTCACCAGCGTTGAGCGAGGCACGTCAAAAGC
GCGCCATGGGCGACTACAAAGAGCTGACAGACATCATTGACGAGCTGGAG
GAGAATAGCCTGGCCCAGAAGGCCAGTGCCACCATGCAGGTGGCTGCCAT
GCCGCCGCAGGGCCAGGAATTCGATTTGGACACCATGCCGCCACTGACCT
ATTACCTGCTCCTTCAAAAGCTACGACAGCTGCAGAGTAATGGGGAGCCC
GCTTATCGCGTGCGGACGCCACGCCTTGGCCGCAGCATTGACTCCTGGCG
ACTACTGGACGCGGAGGGGGCGACGGGAATGGCGGGCGGCGAGGAGGCCA
TCGGCGGGCAGTTCATGCAGCGCATGGTTAAGAAATCGGTGCCGTTCAAG
CCACGCCTGGGCAAACGTGCTCAAGTGTGCGGTGGCGATTGAAAGCTTTC
TAGACCAT
BS06887.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:02:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hug-RA | 576 | CG6371-PA | 1..576 | 17..592 | 2880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:02:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hug-RA | 1033 | CG6371-RA | 169..744 | 17..592 | 2880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:02:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12527746..12528030 | 96..380 | 1425 | 100 | Plus |
3R | 32079331 | 3R | 12528576..12528787 | 381..592 | 1060 | 100 | Plus |
3R | 32079331 | 3R | 12526356..12526440 | 17..101 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:02:18 has no hits.
BS06887.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:56 Download gff for
BS06887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hug-RA | 1..576 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:50:35 Download gff for
BS06887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hug-RA | 164..744 | 9..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:52 Download gff for
BS06887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hug-RA | 169..743 | 17..591 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:56 Download gff for
BS06887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hug-RA | 164..744 | 9..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:53 Download gff for
BS06887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hug-RA | 169..743 | 17..591 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:53 Download gff for
BS06887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12526356..12526439 | 17..100 | 100 | -> | Plus |
3R | 12527751..12528030 | 101..380 | 100 | -> | Plus |
3R | 12528576..12528786 | 381..591 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:52 Download gff for
BS06887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8352078..8352161 | 17..100 | 100 | -> | Plus |
arm_3R | 8353473..8353752 | 101..380 | 100 | -> | Plus |
arm_3R | 8354298..8354508 | 381..591 | 100 | | Plus |
BS06887.pep Sequence
Translation from 16 to 591
> BS06887.pep
MCGPSYCTLLLIAASCYILVCSHAKSLQGTSKLDLGNHISAGSARGSLSP
ASPALSEARQKRAMGDYKELTDIIDELEENSLAQKASATMQVAAMPPQGQ
EFDLDTMPPLTYYLLLQKLRQLQSNGEPAYRVRTPRLGRSIDSWRLLDAE
GATGMAGGEEAIGGQFMQRMVKKSVPFKPRLGKRAQVCGGD*
BS06887.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hug-PA | 191 | CG6371-PA | 1..191 | 1..191 | 981 | 100 | Plus |