Clone BS06889 Report

Search the DGRC for BS06889

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:68
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptVhaPPA1-1-RA
Protein status:BS06889.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06889.3prime Sequence

669 bp (668 high quality bases) assembled on 2005-12-04

> BS06889.3prime
ATGGTCTAGAAAGCTTCTACTCCTTGTCGCCCATCTTGGACTTGGAGGTC
ATGTAGATGCCCACGATGAGGCCGAACAGACCGATGGCCGAACCGAAGAT
CTCCACAATAAGGATCTTGACGAACAGGGCGGCATTGGCGGCGTCCGAGA
GGGCGGCACCCGAACCCACAATGCCCACAGCAATGCCGCAGAACAGATTG
ACCAGGCCGACAGCCAGGCCAGCACCGAAGATGAGGTAGCCGGAGAACCA
GTTCGTGTTCTGAATAGCCGCCTGCGAAAGGGCCGTCTCCATCGAGAACT
GCTCCAGCTGGCCGGACAGAACGATGGCGGTGATCAGGCCGTAGATGGCC
ACGGCCTCGCAGAAGATGACCGAGATCAGATTCTTGGTCTTGATGCGGGG
CGCCTTCACACCACCGCCCACGATGCTCGTGCCCGTCGTATGGATGCCCA
GGGCGGCGCCCACGACGGACAGCGAGACGGAGAGTCCGATGCCCAGGCAG
GCCCACATGTACGGGTTTGAGGAGGCCAGGAACCAGCCCACGCTCACCCG
CTCGCCCTTGCCCGTCATCACGAAGTACAGGGTCAGGATGGTGGCCACGG
CGAGGAAGAGCCACAGGAACGTTTGGGACACCACGGTGCGTATTTGGGCC
GCCATGTCGACTGATAACT

BS06889.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG7007-PA 639 VhaPPA1-1-RA 1..639 655..17 3195 100 Minus
CG7026-PA 606 CG7026-RA 232..318 397..311 235 90.8 Minus
CG7026-PA 606 CG7026-RA 505..588 124..41 170 88 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:25:20
Subject Length Description Subject Range Query Range Score Percent Strand
VhaPPA1-1-RB 1348 CG7007-RB 127..765 655..17 3195 100 Minus
VhaPPA1-1-RA 1352 CG7007-RA 131..769 655..17 3195 100 Minus
VhaPPA1-2-RB 672 CG7026-RB 471..621 191..41 395 84.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14903234..14903872 17..655 3195 100 Plus
3R 32079331 3R 14899657..14899807 41..191 395 84.1 Plus
3R 32079331 3R 14899927..14900154 311..538 345 76.8 Plus
Blast to na_te.dros performed on 2015-02-02 20:25:15 has no hits.

BS06889.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:55:20 Download gff for BS06889.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7007-PA 1..639 17..655 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:39:15 Download gff for BS06889.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7007-PA 1..639 17..655 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:04:03 Download gff for BS06889.3prime
Subject Subject Range Query Range Percent Splice Strand
VhaPPA1-1-RA 136..790 9..665 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:15:32 Download gff for BS06889.3prime
Subject Subject Range Query Range Percent Splice Strand
VhaPPA1-1-RA 123..777 9..665 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:15:32 Download gff for BS06889.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14903226..14903880 9..665 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:04:03 Download gff for BS06889.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10728948..10729602 9..665 98   Plus

BS06889.5prime Sequence

669 bp (668 high quality bases) assembled on 2005-12-04

> BS06889.5prime
GAAGTTATCAGTCGACATGGCGGCCCAAATACGCACCGTGGTGTCCCAAA
CGTTCCTGTGGCTCTTCCTCGCCGTGGCCACCATCCTGACCCTGTACTTC
GTGATGACGGGCAAGGGCGAGCGGGTGAGCGTGGGCTGGTTCCTGGCCTC
CTCAAACCCGTACATGTGGGCCTGCCTGGGCATCGGACTCTCCGTCTCGC
TGTCCGTCGTGGGCGCCGCCCTGGGCATCCATACGACGGGCACGAGCATC
GTGGGCGGTGGTGTGAAGGCGCCCCGCATCAAGACCAAGAATCTGATCTC
GGTCATCTTCTGCGAGGCCGTGGCCATCTACGGCCTGATCACCGCCATCG
TTCTGTCCGGCCAGCTGGAGCAGTTCTCGATGGAGACGGCCCTTTCGCAG
GCGGCTATTCAGAACACGAACTGGTTCTCCGGCTACCTCATCTTCGGTGC
TGGCCTGGCTGTCGGCCTGGTCAATCTGTTCTGCGGCATTGCTGTGGGCA
TTGTGGGTTCGGGTGCCGCCCTCTCGGACGCCGCCAATGCCGCCCTGTTC
GTCAAGATCCTTATTGTGGAGATCTTCGGTTCGGCCATCGGTCTGTTCGG
CCTCATCGTGGGCATCTACATGACCTCCAAGTCCAAGATGGGCGACAAGG
AGTAGAAGCTTTCTAGACC

BS06889.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7007-PA 639 VhaPPA1-1-RA 1..639 17..655 3195 100 Plus
CG7026-PA 606 CG7026-RA 232..318 275..361 235 90.8 Plus
CG7026-PA 606 CG7026-RA 505..588 548..631 170 88 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:24:51
Subject Length Description Subject Range Query Range Score Percent Strand
VhaPPA1-1-RB 1348 CG7007-RB 127..765 17..655 3195 100 Plus
VhaPPA1-1-RA 1352 CG7007-RA 131..769 17..655 3195 100 Plus
VhaPPA1-2-RB 672 CG7026-RB 471..621 481..631 395 84.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:24:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14903234..14903872 655..17 3195 100 Minus
3R 32079331 3R 14899657..14899807 631..481 395 84.1 Minus
3R 32079331 3R 14899927..14900154 361..134 345 76.8 Minus
Blast to na_te.dros performed on 2015-02-04 02:24:47 has no hits.

BS06889.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:55:21 Download gff for BS06889.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7007-PA 1..639 17..655 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:39:17 Download gff for BS06889.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7007-PA 1..639 17..655 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:50:09 Download gff for BS06889.5prime
Subject Subject Range Query Range Percent Splice Strand
VhaPPA1-1-RA 136..790 7..663 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:36:22 Download gff for BS06889.5prime
Subject Subject Range Query Range Percent Splice Strand
VhaPPA1-1-RA 123..777 7..663 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:36:22 Download gff for BS06889.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14903226..14903880 7..663 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:50:09 Download gff for BS06889.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10728948..10729602 7..663 98   Minus

BS06889.complete Sequence

671 bp assembled on 2007-10-17

GenBank Submission: FJ635660

> BS06889.complete
GAAGTTATCAGTCGACATGGCGGCCCAAATACGCACCGTGGTGTCCCAAA
CGTTCCTGTGGCTCTTCCTCGCCGTGGCCACCATCCTGACCCTGTACTTC
GTGATGACGGGCAAGGGCGAGCGGGTGAGCGTGGGCTGGTTCCTGGCCTC
CTCAAACCCGTACATGTGGGCCTGCCTGGGCATCGGACTCTCCGTCTCGC
TGTCCGTCGTGGGCGCCGCCCTGGGCATCCATACGACGGGCACGAGCATC
GTGGGCGGTGGTGTGAAGGCGCCCCGCATCAAGACCAAGAATCTGATCTC
GGTCATCTTCTGCGAGGCCGTGGCCATCTACGGCCTGATCACCGCCATCG
TTCTGTCCGGCCAGCTGGAGCAGTTCTCGATGGAGACGGCCCTTTCGCAG
GCGGCTATTCAGAACACGAACTGGTTCTCCGGCTACCTCATCTTCGGTGC
TGGCCTGGCTGTCGGCCTGGTCAATCTGTTCTGCGGCATTGCTGTGGGCA
TTGTGGGTTCGGGTGCCGCCCTCTCGGACGCCGCCAATGCCGCCCTGTTC
GTCAAGATCCTTATTGTGGAGATCTTCGGTTCGGCCATCGGTCTGTTCGG
CCTCATCGTGGGCATCTACATGACCTCCAAGTCCAAGATGGGCGACAAGG
AGTAGAAGCTTTCTAGACCAT

BS06889.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:49:29
Subject Length Description Subject Range Query Range Score Percent Strand
VhaPPA1-1-RB 639 CG7007-PB 1..639 17..655 3195 100 Plus
VhaPPA1-1-RA 639 CG7007-PA 1..639 17..655 3195 100 Plus
VhaPPA1-2-RB 639 CG7026-PB 471..621 481..631 395 84.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:49:31
Subject Length Description Subject Range Query Range Score Percent Strand
VhaPPA1-1-RB 1348 CG7007-RB 127..765 17..655 3195 100 Plus
VhaPPA1-1-RA 1352 CG7007-RA 131..769 17..655 3195 100 Plus
VhaPPA1-2-RB 672 CG7026-RB 471..621 481..631 395 84.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:49:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14903234..14903872 655..17 3195 100 Minus
3R 32079331 3R 14899657..14899807 631..481 395 84.1 Minus
3R 32079331 3R 14899927..14900154 361..134 345 76.8 Minus
Blast to na_te.dros performed on 2014-11-28 00:49:28 has no hits.

BS06889.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:06:21 Download gff for BS06889.complete
Subject Subject Range Query Range Percent Splice Strand
VhaPPA1-1-RA 1..639 17..655 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:52:07 Download gff for BS06889.complete
Subject Subject Range Query Range Percent Splice Strand
VhaPPA1-1-RA 136..790 7..663 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:00:18 Download gff for BS06889.complete
Subject Subject Range Query Range Percent Splice Strand
VhaPPA1-1-RA 144..782 17..655 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:30:09 Download gff for BS06889.complete
Subject Subject Range Query Range Percent Splice Strand
VhaPPA1-1-RA 144..782 17..655 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:11 Download gff for BS06889.complete
Subject Subject Range Query Range Percent Splice Strand
VhaPPA1-1-RA 131..769 17..655 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:11 Download gff for BS06889.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14903234..14903872 17..655 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:00:18 Download gff for BS06889.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10728956..10729594 17..655 100   Minus

BS06889.pep Sequence

Translation from 16 to 654

> BS06889.pep
MAAQIRTVVSQTFLWLFLAVATILTLYFVMTGKGERVSVGWFLASSNPYM
WACLGIGLSVSLSVVGAALGIHTTGTSIVGGGVKAPRIKTKNLISVIFCE
AVAIYGLITAIVLSGQLEQFSMETALSQAAIQNTNWFSGYLIFGAGLAVG
LVNLFCGIAVGIVGSGAALSDAANAALFVKILIVEIFGSAIGLFGLIVGI
YMTSKSKMGDKE*

BS06889.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:32:48
Subject Length Description Subject Range Query Range Score Percent Strand
VhaPPA1-1-PB 212 CG7007-PB 1..212 1..212 1050 100 Plus
VhaPPA1-1-PA 212 CG7007-PA 1..212 1..212 1050 100 Plus
VhaPPA1-2-PB 212 CG7026-PB 31..209 29..207 623 67.6 Plus
Vha16-1-PB 159 CG3161-PB 5..159 43..205 251 34.3 Plus
Vha16-1-PA 159 CG3161-PA 5..159 43..205 251 34.3 Plus