Clone Sequence Records
BS06889.3prime Sequence
669 bp (668 high quality bases) assembled on 2005-12-04
> BS06889.3prime
ATGGTCTAGAAAGCTTCTACTCCTTGTCGCCCATCTTGGACTTGGAGGTC
ATGTAGATGCCCACGATGAGGCCGAACAGACCGATGGCCGAACCGAAGAT
CTCCACAATAAGGATCTTGACGAACAGGGCGGCATTGGCGGCGTCCGAGA
GGGCGGCACCCGAACCCACAATGCCCACAGCAATGCCGCAGAACAGATTG
ACCAGGCCGACAGCCAGGCCAGCACCGAAGATGAGGTAGCCGGAGAACCA
GTTCGTGTTCTGAATAGCCGCCTGCGAAAGGGCCGTCTCCATCGAGAACT
GCTCCAGCTGGCCGGACAGAACGATGGCGGTGATCAGGCCGTAGATGGCC
ACGGCCTCGCAGAAGATGACCGAGATCAGATTCTTGGTCTTGATGCGGGG
CGCCTTCACACCACCGCCCACGATGCTCGTGCCCGTCGTATGGATGCCCA
GGGCGGCGCCCACGACGGACAGCGAGACGGAGAGTCCGATGCCCAGGCAG
GCCCACATGTACGGGTTTGAGGAGGCCAGGAACCAGCCCACGCTCACCCG
CTCGCCCTTGCCCGTCATCACGAAGTACAGGGTCAGGATGGTGGCCACGG
CGAGGAAGAGCCACAGGAACGTTTGGGACACCACGGTGCGTATTTGGGCC
GCCATGTCGACTGATAACT
BS06889.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7007-PA | 639 | VhaPPA1-1-RA | 1..639 | 655..17 | 3195 | 100 | Minus |
CG7026-PA | 606 | CG7026-RA | 232..318 | 397..311 | 235 | 90.8 | Minus |
CG7026-PA | 606 | CG7026-RA | 505..588 | 124..41 | 170 | 88 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:25:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaPPA1-1-RB | 1348 | CG7007-RB | 127..765 | 655..17 | 3195 | 100 | Minus |
VhaPPA1-1-RA | 1352 | CG7007-RA | 131..769 | 655..17 | 3195 | 100 | Minus |
VhaPPA1-2-RB | 672 | CG7026-RB | 471..621 | 191..41 | 395 | 84.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:25:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14903234..14903872 | 17..655 | 3195 | 100 | Plus |
3R | 32079331 | 3R | 14899657..14899807 | 41..191 | 395 | 84.1 | Plus |
3R | 32079331 | 3R | 14899927..14900154 | 311..538 | 345 | 76.8 | Plus |
Blast to na_te.dros performed on 2015-02-02 20:25:15 has no hits.
BS06889.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:55:20 Download gff for
BS06889.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7007-PA | 1..639 | 17..655 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:39:15 Download gff for
BS06889.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7007-PA | 1..639 | 17..655 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:04:03 Download gff for
BS06889.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaPPA1-1-RA | 136..790 | 9..665 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:15:32 Download gff for
BS06889.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaPPA1-1-RA | 123..777 | 9..665 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:15:32 Download gff for
BS06889.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14903226..14903880 | 9..665 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:04:03 Download gff for
BS06889.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10728948..10729602 | 9..665 | 98 | | Plus |
BS06889.5prime Sequence
669 bp (668 high quality bases) assembled on 2005-12-04
> BS06889.5prime
GAAGTTATCAGTCGACATGGCGGCCCAAATACGCACCGTGGTGTCCCAAA
CGTTCCTGTGGCTCTTCCTCGCCGTGGCCACCATCCTGACCCTGTACTTC
GTGATGACGGGCAAGGGCGAGCGGGTGAGCGTGGGCTGGTTCCTGGCCTC
CTCAAACCCGTACATGTGGGCCTGCCTGGGCATCGGACTCTCCGTCTCGC
TGTCCGTCGTGGGCGCCGCCCTGGGCATCCATACGACGGGCACGAGCATC
GTGGGCGGTGGTGTGAAGGCGCCCCGCATCAAGACCAAGAATCTGATCTC
GGTCATCTTCTGCGAGGCCGTGGCCATCTACGGCCTGATCACCGCCATCG
TTCTGTCCGGCCAGCTGGAGCAGTTCTCGATGGAGACGGCCCTTTCGCAG
GCGGCTATTCAGAACACGAACTGGTTCTCCGGCTACCTCATCTTCGGTGC
TGGCCTGGCTGTCGGCCTGGTCAATCTGTTCTGCGGCATTGCTGTGGGCA
TTGTGGGTTCGGGTGCCGCCCTCTCGGACGCCGCCAATGCCGCCCTGTTC
GTCAAGATCCTTATTGTGGAGATCTTCGGTTCGGCCATCGGTCTGTTCGG
CCTCATCGTGGGCATCTACATGACCTCCAAGTCCAAGATGGGCGACAAGG
AGTAGAAGCTTTCTAGACC
BS06889.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7007-PA | 639 | VhaPPA1-1-RA | 1..639 | 17..655 | 3195 | 100 | Plus |
CG7026-PA | 606 | CG7026-RA | 232..318 | 275..361 | 235 | 90.8 | Plus |
CG7026-PA | 606 | CG7026-RA | 505..588 | 548..631 | 170 | 88 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:24:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaPPA1-1-RB | 1348 | CG7007-RB | 127..765 | 17..655 | 3195 | 100 | Plus |
VhaPPA1-1-RA | 1352 | CG7007-RA | 131..769 | 17..655 | 3195 | 100 | Plus |
VhaPPA1-2-RB | 672 | CG7026-RB | 471..621 | 481..631 | 395 | 84.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:24:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14903234..14903872 | 655..17 | 3195 | 100 | Minus |
3R | 32079331 | 3R | 14899657..14899807 | 631..481 | 395 | 84.1 | Minus |
3R | 32079331 | 3R | 14899927..14900154 | 361..134 | 345 | 76.8 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:24:47 has no hits.
BS06889.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:55:21 Download gff for
BS06889.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7007-PA | 1..639 | 17..655 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:39:17 Download gff for
BS06889.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7007-PA | 1..639 | 17..655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:50:09 Download gff for
BS06889.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaPPA1-1-RA | 136..790 | 7..663 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:36:22 Download gff for
BS06889.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaPPA1-1-RA | 123..777 | 7..663 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:36:22 Download gff for
BS06889.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14903226..14903880 | 7..663 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:50:09 Download gff for
BS06889.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10728948..10729602 | 7..663 | 98 | | Minus |
BS06889.complete Sequence
671 bp assembled on 2007-10-17
GenBank Submission: FJ635660
> BS06889.complete
GAAGTTATCAGTCGACATGGCGGCCCAAATACGCACCGTGGTGTCCCAAA
CGTTCCTGTGGCTCTTCCTCGCCGTGGCCACCATCCTGACCCTGTACTTC
GTGATGACGGGCAAGGGCGAGCGGGTGAGCGTGGGCTGGTTCCTGGCCTC
CTCAAACCCGTACATGTGGGCCTGCCTGGGCATCGGACTCTCCGTCTCGC
TGTCCGTCGTGGGCGCCGCCCTGGGCATCCATACGACGGGCACGAGCATC
GTGGGCGGTGGTGTGAAGGCGCCCCGCATCAAGACCAAGAATCTGATCTC
GGTCATCTTCTGCGAGGCCGTGGCCATCTACGGCCTGATCACCGCCATCG
TTCTGTCCGGCCAGCTGGAGCAGTTCTCGATGGAGACGGCCCTTTCGCAG
GCGGCTATTCAGAACACGAACTGGTTCTCCGGCTACCTCATCTTCGGTGC
TGGCCTGGCTGTCGGCCTGGTCAATCTGTTCTGCGGCATTGCTGTGGGCA
TTGTGGGTTCGGGTGCCGCCCTCTCGGACGCCGCCAATGCCGCCCTGTTC
GTCAAGATCCTTATTGTGGAGATCTTCGGTTCGGCCATCGGTCTGTTCGG
CCTCATCGTGGGCATCTACATGACCTCCAAGTCCAAGATGGGCGACAAGG
AGTAGAAGCTTTCTAGACCAT
BS06889.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:49:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaPPA1-1-RB | 639 | CG7007-PB | 1..639 | 17..655 | 3195 | 100 | Plus |
VhaPPA1-1-RA | 639 | CG7007-PA | 1..639 | 17..655 | 3195 | 100 | Plus |
VhaPPA1-2-RB | 639 | CG7026-PB | 471..621 | 481..631 | 395 | 84.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:49:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaPPA1-1-RB | 1348 | CG7007-RB | 127..765 | 17..655 | 3195 | 100 | Plus |
VhaPPA1-1-RA | 1352 | CG7007-RA | 131..769 | 17..655 | 3195 | 100 | Plus |
VhaPPA1-2-RB | 672 | CG7026-RB | 471..621 | 481..631 | 395 | 84.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:49:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14903234..14903872 | 655..17 | 3195 | 100 | Minus |
3R | 32079331 | 3R | 14899657..14899807 | 631..481 | 395 | 84.1 | Minus |
3R | 32079331 | 3R | 14899927..14900154 | 361..134 | 345 | 76.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:49:28 has no hits.
BS06889.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:06:21 Download gff for
BS06889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaPPA1-1-RA | 1..639 | 17..655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:52:07 Download gff for
BS06889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaPPA1-1-RA | 136..790 | 7..663 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:00:18 Download gff for
BS06889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaPPA1-1-RA | 144..782 | 17..655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:30:09 Download gff for
BS06889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaPPA1-1-RA | 144..782 | 17..655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:11 Download gff for
BS06889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaPPA1-1-RA | 131..769 | 17..655 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:11 Download gff for
BS06889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14903234..14903872 | 17..655 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:00:18 Download gff for
BS06889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10728956..10729594 | 17..655 | 100 | | Minus |
BS06889.pep Sequence
Translation from 16 to 654
> BS06889.pep
MAAQIRTVVSQTFLWLFLAVATILTLYFVMTGKGERVSVGWFLASSNPYM
WACLGIGLSVSLSVVGAALGIHTTGTSIVGGGVKAPRIKTKNLISVIFCE
AVAIYGLITAIVLSGQLEQFSMETALSQAAIQNTNWFSGYLIFGAGLAVG
LVNLFCGIAVGIVGSGAALSDAANAALFVKILIVEIFGSAIGLFGLIVGI
YMTSKSKMGDKE*
BS06889.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:32:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaPPA1-1-PB | 212 | CG7007-PB | 1..212 | 1..212 | 1050 | 100 | Plus |
VhaPPA1-1-PA | 212 | CG7007-PA | 1..212 | 1..212 | 1050 | 100 | Plus |
VhaPPA1-2-PB | 212 | CG7026-PB | 31..209 | 29..207 | 623 | 67.6 | Plus |
Vha16-1-PB | 159 | CG3161-PB | 5..159 | 43..205 | 251 | 34.3 | Plus |
Vha16-1-PA | 159 | CG3161-PA | 5..159 | 43..205 | 251 | 34.3 | Plus |