Clone Sequence Records
BS06890.complete Sequence
2063 bp assembled on 2009-12-07
GenBank Submission: KX801574
> BS06890.complete
GAAGTTATCAGTCGACATGAACGCCACACTCAATTCCGCGGGCGGCAAGC
GTCAGCTGCGCTTTCGCGGCGACGTCACCGGCAGCCGAGTGGAGGAACTG
CATCATCAGCAGCAGGAGGAGCAGAAGCAAAAGGCGCCGCTCGCCCAGGA
TGACGTTGCAGCGACGCCGACTGCGACGCCGGCAGCGGGCTCAGCGCAGC
AGCGACTGCAGAGCGGAACCGCCGAAACCTGCACAAACACATTCTACGAC
TTCTTCAAAGTGGAGATGACACGCGGCTATATGCTGGAGCACGACGAGGA
GCGCTATTCGGCGCGTAGGCAGAAGATCTACAGCTTCATGCGCATACCGC
GGGATCTGGAGCGATTCATGGTGTACGGGATCATGCAGTGCGCCGACTCA
TTTCTCTACATTCACACTTTTCTGCCCGTCCGATTTGTGATGGCCGTTTG
GGCCCTAGTTTCCAGGACGGTGGCAAGAATCTTTCGACTACGCAGCAGCG
GACAAAGGCTGCTATCGCCGGCGGAGATCTGTGATCTGCTGAAGGGCGTC
ATCTGGATGACGGTGACGCTGATAATGCTCCTGGTGGACACGAATCGGGT
GTACCACATCATCAAGTCACAGTCGATCATCAAGCTGTACATATTCTACA
ACATGCTGGAGGTGGGCGACCGGCTGTTGTCCGCTTTTGGTCAGGACACG
ATCGATGCTCTCTTCTGGACGGCGACAGAACCAAAGAATTCCAAGCGAGA
GCACTTTGGAGTGCTTACGCACGTTCTCTTCACGCTAATCTATGTCTTCT
TGCACAGCGGACTGATCATGTTTCAGGCCACCTGTTTGAATGTGGCGGTG
AACTCCAACAACAAGGGCCTGCTGACCATCATGATATCGAATAATTTCGT
GGAGCTCAAGGGATCCGTGTTCAAGAAGTTCGACAAAAACAACCTGTTCC
AATTGACCTGCAGCGATGTACGAGAGCGATTCCATCTGTCTGTGCTTCTG
TTCATTGTGGTCATCCAGACCATGAAGGAGTTTGACTGGAGCATCACCCA
GTTCTGTGTAATGCTGCCCGACTGCTTTGCCGTGCTGTTCACGGAAATTC
TGATCGATTGGGTGAAGCATGCGTTTATCACGCGATTCAATGAGCTGCCG
GAGAGCATCTACAGGGAGTACACGACCAGCTTGGCCTACGATATGACCCA
GACGCGGCAAAAGCACGCATTCTCAGATCATTCGGATTTGGTGGCCAGAC
GCATGGGCTTCATTCCATTTCCGCTGGCTGTGGTCCTGATAAAGGCCATC
TATACAGCGGTCTCTTTCGAGAATCTAGCCGCCTGGCTGCTCTTCCTGCT
GGCCTACTTGTTTGCCATGGGCTTGCGCATTTGCCTGACCATCTGTGCGC
TGGGCAAGGCCTGCAAGCTAATGAAGGAACATCAGACCGAGCGCAACAGT
TCTACACCGAGTAGCATGACCAATGTGCCGGTCATAGGCGCAGCTGCTCC
TGTCTCAGCGGCTGCGACGGGCGGACAGAATCACAATAATAATAATAACA
ACAATAACAACAGCATTAGCATTGGCTCGAAGCCAGCCCAAGTGACCACA
CTGTTGACCCCGCCCAGTGCTGGCCATCTCGATGTGAGTAAGAATTTCTC
GCGCACCTCAATCGCATCCACATCCACGCCAAAGAAGGCGGTCAGTGAGC
AGGAGCTGGACGTGACCAACTCCCTGGAACTGGGCGCCACAGCTCTCTTC
TCCAACAGCGATGTGGATTTGGACGATGTTTGCCTCAACGAGCAGGTGAC
CAACACCAATACCAGTTCAGCCGTCCAGGAGGTTTACCAGGAGCAGGACC
TGGTGCGCAGCCAACCGGATTTGATGCTGCTCAACAATTCCGGCGACGGA
GTGACAAGTGCCAAGGCTAAGAAGGCCACCCAGCGATTGCCCAAGCGAAC
GCACAAGCGTTCCGAATCGGAGCCGGGCATGCCCAGCATGGTGGAGAAGG
GCGGAGCTGCTGGTATTGCGGGAGGCAACCAAACGACACAGCTGTAGAAG
CTTTCTAGACCAT
BS06890.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:11:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7218-RB | 2031 | CG7218-PB | 1..2031 | 17..2047 | 10155 | 100 | Plus |
| CG7218-RA | 2031 | CG7218-PA | 1..2031 | 17..2047 | 10155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:11:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7218-RB | 2543 | CG7218-RB | 96..2126 | 17..2047 | 10155 | 100 | Plus |
| CG7218-RA | 2169 | CG7218-RA | 96..2126 | 17..2047 | 10155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:11:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18161809..18163034 | 2047..822 | 6130 | 100 | Minus |
| 3R | 32079331 | 3R | 18163103..18163715 | 827..215 | 3065 | 100 | Minus |
| 3R | 32079331 | 3R | 18164103..18164302 | 216..17 | 1000 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:11:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 12..58 | 1522..1568 | 127 | 74.5 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7050..7096 | 1522..1568 | 127 | 74.5 | Plus |
| rover | 7318 | rover ROVER 7318bp | 2714..2775 | 1192..1253 | 121 | 66.1 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 29..62 | 1527..1560 | 116 | 82.4 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7067..7100 | 1527..1560 | 116 | 82.4 | Plus |
| Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 2877..2906 | 1529..1558 | 114 | 86.7 | Plus |
| Stalker | 7256 | Stalker STALKER 7256bp | 2771..2800 | 1529..1558 | 114 | 86.7 | Plus |
BS06890.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:42 Download gff for
BS06890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7218-RA | 92..2122 | 17..2047 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:08:10 Download gff for
BS06890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7218-RA | 89..2119 | 17..2047 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:22:33 Download gff for
BS06890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7218-RA | 92..2122 | 17..2047 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:55 Download gff for
BS06890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7218-RA | 96..2126 | 17..2047 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:55 Download gff for
BS06890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18161809..18163029 | 827..2047 | 100 | <- | Minus |
| 3R | 18163104..18163714 | 216..826 | 100 | <- | Minus |
| 3R | 18164104..18164302 | 17..215 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:08:10 Download gff for
BS06890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13987531..13988751 | 827..2047 | 100 | <- | Minus |
| arm_3R | 13988826..13989436 | 216..826 | 100 | <- | Minus |
| arm_3R | 13989826..13990024 | 17..215 | 100 | | Minus |
BS06890.3prime Sequence
946 bp (790 high quality bases) assembled on 2005-12-04
> BS06890.3prime
ATGGTCTAGAAAGCTTCTACAGCTGTGTCGTTTGGTTGCCTCCCGCAATA
CCAGCAGCTCCGCCCTTCTCCACCATGCTGGGCATGCCCGGCTCCGATTC
GGAACGCTTGTGCGTTCGCTTGGGCAATCGCTGGGTGGCCTTCTTAGCCT
TGGCACTTGTCACTCCGTCGCCGGAATTGTTGAGCAGCATCAAATCCGGT
TGGCTGCGCACCAGGTCCTGCTCCTGGTAAACCTCCTGGACGGCTGAACT
GGTATTGGTGTTGGTCACCTGCTCGTTGAGGCAAACATCGTCCAAATCCA
CATCGCTGTTGGAGAAGAGAGCTGTGGCGCCCAGTTCCAGGGAGTTGGTC
ACGTCCAGCTCCTGCTCACTGACCGCCTTCTTTGGCGTGGATGTGGATGC
GATTGAGGTGCGCGAGAAATTCTTACTCACATCGAGATGGCCAGCACTGG
GCGGGGTCAACAGTGTGGTCACTTGGGCTGGCTTCGAGCCAATGCTAATG
CTGTTGTTATTGTTGTTATTATTATTATTGTGATTCTGTCCGCCCGTCGC
AGCCGCTGAGACAGGAGCAGCTGCGCCTATGACCGGCACATTGGTCATGC
TACTCGGTGTAGAACTGTTGCGCTCGGTCTGATGTTCCTTCATTAGCTTG
CAGGCCTTGCCCAGCGCACAGATGGTCAGGCAAATGCGCAAGCCCATGGC
AAACAAGTAGGCCAGCAGGAAGAGCAGCCAGGCGGCTAGATTCTCGAAAG
AGACCGCTGTATAGATGGCCTTTATCAGGACCACAGCCAGCGGAAATGGA
ATGAAGCCCATGCGTCTGGCCACCAAATCCGAATGATCTGAGAATGCGTG
CTTTTGCCGCGTCTGGGTCATATCGTAAGCCAAGCTGGTCGTGTACTCCC
TGTAGATGCTCTCCGGCAGCTCATTGAATCGCGTGATAAACGCATG
BS06890.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7218-PA | 2031 | CG7218-RA | 1102..2031 | 946..17 | 4625 | 99.8 | Minus |
| CG3905-PA | 4107 | Su(z)2-RA | 3269..3301 | 531..499 | 140 | 96.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:19:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7218-RB | 2543 | CG7218-RB | 1197..2126 | 946..17 | 4635 | 99.9 | Minus |
| CG7218-RA | 2169 | CG7218-RA | 1197..2126 | 946..17 | 4635 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:19:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18161809..18162738 | 17..946 | 4635 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-01 08:19:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 12..58 | 542..496 | 127 | 74.5 | Minus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7050..7096 | 542..496 | 127 | 74.5 | Minus |
| rover | 7318 | rover ROVER 7318bp | 2714..2775 | 872..811 | 121 | 66.1 | Minus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7067..7100 | 537..504 | 116 | 82.4 | Minus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 29..62 | 537..504 | 116 | 82.4 | Minus |
| Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 2877..2906 | 535..506 | 114 | 86.7 | Minus |
| Stalker | 7256 | Stalker STALKER 7256bp | 2771..2800 | 535..506 | 114 | 86.7 | Minus |
| accord2 | 7650 | accord2 QBERT 7650bp | 6261..6300 | 496..535 | 110 | 75 | Plus |
BS06890.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:55:22 Download gff for
BS06890.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7218-PA | 1102..2031 | 17..946 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:39:18 Download gff for
BS06890.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7218-PA | 1102..2031 | 17..946 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:23:13 Download gff for
BS06890.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7218-RA | 1190..2119 | 17..946 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:50:50 Download gff for
BS06890.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7218-RA | 1197..2126 | 17..946 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:50:50 Download gff for
BS06890.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18161809..18162738 | 17..946 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:23:13 Download gff for
BS06890.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13987531..13988460 | 17..946 | 99 | | Plus |
BS06890.5prime Sequence
854 bp (821 high quality bases) assembled on 2005-12-04
> BS06890.5prime
GAAGTTATCAGTCGACATGAACGCCACACTCAATTCCGCGGGCGGCAAGC
GTCAGCTGCGCTTTCGCGGCGACGTCACCGGCAGCCGAGTGGAGGAACTG
CATCATCAGCAGCAGGAGGAGCAGAAGCAAAAGGCGCCGCTCGCCCAGGA
TGACGTTGCAGCGACGCCGACTGCGACGCCGGCAGCGGGCTCAGCGCAGC
AGCGACTGCAGAGCGGAACCGCCGAAACCTGCACAAACACATTCTACGAC
TTCTTCAAAGTGGAGATGACACGCGGCTATATGCTGGAGCACGACGAGGA
GCGCTATTCGGCGCGTAGGCAGAAGATCTACAGCTTCATGCGCATACCGC
GGGATCTGGAGCGATTCATGGTGTACGGGATCATGCAGTGCGCCGACTCA
TTTCTCTACATTCACACTTTTCTGCCCGTCCGATTTGTGATGGCCGTTTG
GGCCCTAGTTTCCAGGACGGTGGCAAGAATCTTTCGACTACGCAGCAGCG
GACAAAGGCTGCTATCGCCGGCGGAGATCTGTGATCTGCTGAAGGGCGTC
ATCTGGATGACGGTGACGCTGATAATGCTCCTGGTGGACACGAATCGGGT
GTACCACATCATCAAGTCACAGTCGATCATCAAGCTGTACATATTCTACA
ACATGCTGGAGGTGGGCGACCGGCTGTTGTCCGCTTTTGGTCAGGACACG
ATCGATGCTCTCTTCTGGACGGCGACAGAACCAAAGAATTCCAAGCGAGA
GCACTTTGGAGTGCTTACGCACGTTCTCTTCACGCTAATCTATGTCTTCT
TGCACAGCGGACTGATCATGTTTCAGGCCACCTGTTTGAATGTGGCGGTG
AACT
BS06890.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:35:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7218-PA | 2031 | CG7218-RA | 1..838 | 17..854 | 4190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:27:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7218-RB | 2543 | CG7218-RB | 96..933 | 17..854 | 4190 | 100 | Plus |
| CG7218-RA | 2169 | CG7218-RA | 96..933 | 17..854 | 4190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:26:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18163103..18163715 | 827..215 | 3065 | 100 | Minus |
| 3R | 32079331 | 3R | 18164103..18164302 | 216..17 | 1000 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:26:59 has no hits.
BS06890.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:55:23 Download gff for
BS06890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7218-PA | 1..838 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:39:20 Download gff for
BS06890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7218-PA | 1..838 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:10:25 Download gff for
BS06890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7218-RA | 89..926 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:47:59 Download gff for
BS06890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7218-RA | 96..933 | 17..854 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:47:59 Download gff for
BS06890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18163002..18163029 | 827..854 | 100 | <- | Minus |
| 3R | 18163104..18163714 | 216..826 | 100 | <- | Minus |
| 3R | 18164104..18164302 | 17..215 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:10:25 Download gff for
BS06890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13988724..13988751 | 827..854 | 100 | <- | Minus |
| arm_3R | 13988826..13989436 | 216..826 | 100 | <- | Minus |
| arm_3R | 13989826..13990024 | 17..215 | 100 | | Minus |
BS06890.pep Sequence
Translation from 16 to 2046
> BS06890.pep
MNATLNSAGGKRQLRFRGDVTGSRVEELHHQQQEEQKQKAPLAQDDVAAT
PTATPAAGSAQQRLQSGTAETCTNTFYDFFKVEMTRGYMLEHDEERYSAR
RQKIYSFMRIPRDLERFMVYGIMQCADSFLYIHTFLPVRFVMAVWALVSR
TVARIFRLRSSGQRLLSPAEICDLLKGVIWMTVTLIMLLVDTNRVYHIIK
SQSIIKLYIFYNMLEVGDRLLSAFGQDTIDALFWTATEPKNSKREHFGVL
THVLFTLIYVFLHSGLIMFQATCLNVAVNSNNKGLLTIMISNNFVELKGS
VFKKFDKNNLFQLTCSDVRERFHLSVLLFIVVIQTMKEFDWSITQFCVML
PDCFAVLFTEILIDWVKHAFITRFNELPESIYREYTTSLAYDMTQTRQKH
AFSDHSDLVARRMGFIPFPLAVVLIKAIYTAVSFENLAAWLLFLLAYLFA
MGLRICLTICALGKACKLMKEHQTERNSSTPSSMTNVPVIGAAAPVSAAA
TGGQNHNNNNNNNNNSISIGSKPAQVTTLLTPPSAGHLDVSKNFSRTSIA
STSTPKKAVSEQELDVTNSLELGATALFSNSDVDLDDVCLNEQVTNTNTS
SAVQEVYQEQDLVRSQPDLMLLNNSGDGVTSAKAKKATQRLPKRTHKRSE
SEPGMPSMVEKGGAAGIAGGNQTTQL*
BS06890.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:29:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7218-PB | 676 | CG7218-PB | 1..676 | 1..676 | 3459 | 100 | Plus |
| CG7218-PA | 676 | CG7218-PA | 1..676 | 1..676 | 3459 | 100 | Plus |
